© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9474.t1 |
| Gene name | |
| Location | scaffold_48:103856..104803 |
| Strand | - |
| Gene length (bp) | 947 |
| Transcript length (bp) | 888 |
| Coding sequence length (bp) | 888 |
| Protein length (aa) | 296 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 5.3E-43 | 30 | 288 |
| PF00106 | adh_short | short chain dehydrogenase | 5.0E-42 | 22 | 238 |
| PF08659 | KR | KR domain | 3.4E-09 | 23 | 116 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1310.21 | 710.47 | 1909.95 |
| 5d_25C | Five days - 25 degrees Celsius | 1416.16 | 756.56 | 2075.77 |
| 7d_25C | Seven days - 25 degrees Celsius | 1519.60 | 776.64 | 2262.57 |
| 10d_25C | Ten days - 25 degrees Celsius | 1744.92 | 916.03 | 2573.81 |
| 7d_15C | Seven days - 15 degrees Celsius | 2383.68 | 1135.69 | 3631.66 |
| 7d_30C | Seven days - 30 degrees Celsius | 1064.08 | 564.03 | 1564.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.824838 | no |
| 3d_25C | 7d_25C | 0.654624 | no |
| 3d_25C | 7d_15C | 0.023673 | yes |
| 3d_25C | 7d_30C | 0.479408 | no |
| 3d_25C | 10d_25C | 0.305440 | no |
| 5d_25C | 7d_25C | 0.854888 | no |
| 5d_25C | 7d_15C | 0.055847 | no |
| 5d_25C | 7d_30C | 0.303429 | no |
| 5d_25C | 10d_25C | 0.494448 | no |
| 7d_25C | 7d_15C | 0.116541 | no |
| 7d_25C | 7d_30C | 0.197778 | no |
| 7d_25C | 10d_25C | 0.689223 | no |
| 7d_15C | 7d_30C | 0.001804 | yes |
| 7d_15C | 10d_25C | 0.307465 | no |
| 7d_30C | 10d_25C | 0.056346 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9474.t1 MSAQESNRSFKLEHLFGLKNRVALVTGGGSGIGLMATQALAVNGAKVYITGRTEEKLDRVADLYSKDIPGQIVPI TADITSKESIQKLVDEISAKESKLHILINAAGISSPHLNTDQDNPKALQEELFKNQSTIQEWEDVMRTNVTHLFF TTTAFLPLLSKGSEDEYGWSSTVVNISSISGLLKTAQRHFAYNASKAAAIHLTKMLAYEIVSSQIKIRVNSIAPG VFPTEMTAHGSDKKQKSTIPKERFEGKIPAGRPGKDEDMATAVLFTVSNQYLNGQTIAVDGGYLLATGTI* |
| Coding | >Pro_DTO377G3_2|g9474.t1 ATGTCAGCTCAAGAAAGTAACCGGAGCTTTAAGCTCGAACACCTTTTCGGGCTGAAAAACAGAGTCGCACTTGTC ACGGGTGGAGGTTCAGGCATCGGCTTGATGGCCACTCAAGCTCTCGCCGTGAATGGTGCTAAAGTCTACATCACC GGTCGCACAGAGGAAAAGTTGGACCGTGTTGCAGATTTATACTCGAAGGATATTCCTGGCCAGATTGTCCCAATC ACTGCCGATATTACCTCCAAAGAGTCGATTCAGAAGCTAGTCGACGAGATATCCGCGAAGGAGTCGAAACTGCAC ATTTTGATCAACGCCGCCGGTATTAGCTCTCCACATCTGAACACAGATCAGGACAACCCCAAAGCATTGCAGGAA GAGCTGTTCAAAAACCAGAGCACGATCCAGGAGTGGGAAGATGTCATGCGGACTAATGTCACACACCTTTTCTTT ACCACCACTGCCTTTCTACCCTTGCTGAGCAAGGGATCAGAGGATGAGTATGGATGGTCTAGCACAGTTGTCAAC ATCTCGTCGATTTCAGGTCTCCTAAAAACAGCCCAGCGTCACTTCGCATACAATGCTAGTAAGGCGGCTGCAATT CATCTCACCAAGATGTTGGCCTACGAGATTGTTTCCTCGCAAATCAAAATTCGTGTAAACAGTATCGCACCCGGG GTCTTTCCGACCGAAATGACGGCCCATGGGAGTGACAAGAAACAAAAGAGCACAATTCCCAAAGAGAGGTTTGAA GGCAAAATCCCTGCCGGACGGCCAGGGAAAGATGAAGACATGGCAACTGCTGTGTTGTTTACTGTCTCGAATCAG TATCTCAATGGTCAAACTATTGCCGTCGACGGCGGGTACTTGCTGGCAACGGGCACAATCTAA |
| Transcript | >Pro_DTO377G3_2|g9474.t1 ATGTCAGCTCAAGAAAGTAACCGGAGCTTTAAGCTCGAACACCTTTTCGGGCTGAAAAACAGAGTCGCACTTGTC ACGGGTGGAGGTTCAGGCATCGGCTTGATGGCCACTCAAGCTCTCGCCGTGAATGGTGCTAAAGTCTACATCACC GGTCGCACAGAGGAAAAGTTGGACCGTGTTGCAGATTTATACTCGAAGGATATTCCTGGCCAGATTGTCCCAATC ACTGCCGATATTACCTCCAAAGAGTCGATTCAGAAGCTAGTCGACGAGATATCCGCGAAGGAGTCGAAACTGCAC ATTTTGATCAACGCCGCCGGTATTAGCTCTCCACATCTGAACACAGATCAGGACAACCCCAAAGCATTGCAGGAA GAGCTGTTCAAAAACCAGAGCACGATCCAGGAGTGGGAAGATGTCATGCGGACTAATGTCACACACCTTTTCTTT ACCACCACTGCCTTTCTACCCTTGCTGAGCAAGGGATCAGAGGATGAGTATGGATGGTCTAGCACAGTTGTCAAC ATCTCGTCGATTTCAGGTCTCCTAAAAACAGCCCAGCGTCACTTCGCATACAATGCTAGTAAGGCGGCTGCAATT CATCTCACCAAGATGTTGGCCTACGAGATTGTTTCCTCGCAAATCAAAATTCGTGTAAACAGTATCGCACCCGGG GTCTTTCCGACCGAAATGACGGCCCATGGGAGTGACAAGAAACAAAAGAGCACAATTCCCAAAGAGAGGTTTGAA GGCAAAATCCCTGCCGGACGGCCAGGGAAAGATGAAGACATGGCAACTGCTGTGTTGTTTACTGTCTCGAATCAG TATCTCAATGGTCAAACTATTGCCGTCGACGGCGGGTACTTGCTGGCAACGGGCACAATCTAA |
| Gene | >Pro_DTO377G3_2|g9474.t1 ATGTCAGCTCAAGAAAGTAACCGGAGCTTTAAGCTCGAACACCTTTTCGGGCTGAAAAACAGAGGTGAGTTACCA TTATAGAAACGGGCTTGCCGTAGCGCTGGCGTCGCTAACAGTGGGTAGTCGCACTTGTCACGGGTGGAGGTTCAG GCATCGGCTTGATGGCCACTCAAGCTCTCGCCGTGAATGGTGCTAAAGTCTACATCACCGGTCGCACAGAGGAAA AGTTGGACCGTGTTGCAGATTTATACTCGAAGGATATTCCTGGCCAGATTGTCCCAATCACTGCCGATATTACCT CCAAAGAGTCGATTCAGAAGCTAGTCGACGAGATATCCGCGAAGGAGTCGAAACTGCACATTTTGATCAACGCCG CCGGTATTAGCTCTCCACATCTGAACACAGATCAGGACAACCCCAAAGCATTGCAGGAAGAGCTGTTCAAAAACC AGAGCACGATCCAGGAGTGGGAAGATGTCATGCGGACTAATGTCACACACCTTTTCTTTACCACCACTGCCTTTC TACCCTTGCTGAGCAAGGGATCAGAGGATGAGTATGGATGGTCTAGCACAGTTGTCAACATCTCGTCGATTTCAG GTCTCCTAAAAACAGCCCAGCGTCACTTCGCATACAATGCTAGTAAGGCGGCTGCAATTCATCTCACCAAGATGT TGGCCTACGAGATTGTTTCCTCGCAAATCAAAATTCGTGTAAACAGTATCGCACCCGGGGTCTTTCCGACCGAAA TGACGGCCCATGGGAGTGACAAGAAACAAAAGAGCACAATTCCCAAAGAGAGGTTTGAAGGCAAAATCCCTGCCG GACGGCCAGGGAAAGATGAAGACATGGCAACTGCTGTGTTGTTTACTGTCTCGAATCAGTATCTCAATGGTCAAA CTATTGCCGTCGACGGCGGGTACTTGCTGGCAACGGGCACAATCTAA |