© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9471.t1 |
| Gene name | |
| Location | scaffold_48:89212..91400 |
| Strand | - |
| Gene length (bp) | 2188 |
| Transcript length (bp) | 1602 |
| Coding sequence length (bp) | 1602 |
| Protein length (aa) | 534 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 2.7E-56 | 48 | 494 |
| PF00324 | AA_permease | Amino acid permease | 1.3E-22 | 65 | 508 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 48 | 70 | 22 |
| 2 | 83 | 105 | 22 |
| 3 | 126 | 148 | 22 |
| 4 | 168 | 190 | 22 |
| 5 | 203 | 225 | 22 |
| 6 | 240 | 262 | 22 |
| 7 | 282 | 304 | 22 |
| 8 | 334 | 356 | 22 |
| 9 | 383 | 405 | 22 |
| 10 | 415 | 437 | 22 |
| 11 | 449 | 471 | 22 |
| 12 | 486 | 505 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.12 | 0.43 | 3.82 |
| 5d_25C | Five days - 25 degrees Celsius | 2.11 | 0.44 | 3.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.62 | 0.21 | 3.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.94 | 0.05 | 1.82 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.70 | 0.21 | 3.20 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.67 | 0.24 | 3.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.995217 | no |
| 3d_25C | 7d_25C | 0.645183 | no |
| 3d_25C | 7d_15C | 0.722713 | no |
| 3d_25C | 7d_30C | 0.695966 | no |
| 3d_25C | 10d_25C | 0.086818 | no |
| 5d_25C | 7d_25C | 0.656935 | no |
| 5d_25C | 7d_15C | 0.733552 | no |
| 5d_25C | 7d_30C | 0.705851 | no |
| 5d_25C | 10d_25C | 0.094135 | no |
| 7d_25C | 7d_15C | 0.951106 | no |
| 7d_25C | 7d_30C | 0.965531 | no |
| 7d_25C | 10d_25C | 0.317104 | no |
| 7d_15C | 7d_30C | 0.984005 | no |
| 7d_15C | 10d_25C | 0.265482 | no |
| 7d_30C | 10d_25C | 0.281659 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9471.t1 MSGPEIISTSPPVGSIGDGKETEFIKVQNEDELRLAQMGHKQELERHFSLWSLIGLAANCTISWTGLGLGLMTAI DAGGPGALIYGFILVFILQSFVGASLAEFVSAYPTEGGMYHWIAAIAPKRYNSLLSFATGWCTVFGWIFTSASTN LIYATTAMALIALYHDDLVVQPWMTFVAYQILNIVTSGVVMFGNRFIPAINKFSLVYLQLAWFITMVVVAAKAPV HNDSKFVFRTWINNTGWDNNVICFITGLVNPMYSLGGLDGISHITEEMPNPGKNAPLGLAITLSIAFVTGLSYLL SLMFSVQDYGSLANTHTGLPLAELFWQATSTRGGAFGLVFMVWIALGPCVIGSQLSTGRVFWAFARDEGLPLSKV WARVNPKLGSPFNAQLCVTVIIALLGCIYLGSSTAFNAMMSSAVTINNFAYLVPILTNVLLFRRTMRRGPFSMGQ TLGMTVNIVSLAWLVFAIVFFSFPYQMPVTVSNMNYTCVVVGGFLSIELAWWLIAGKRYSATVQRAREEGTSETV VIADGKYE* |
| Coding | >Pro_DTO377G3_2|g9471.t1 ATGAGCGGCCCTGAAATTATATCTACCTCTCCGCCGGTCGGGTCTATTGGAGATGGGAAAGAGACCGAGTTTATC AAGGTGCAGAATGAGGATGAGCTGCGGTTGGCCCAGATGGGGCATAAGCAGGAGTTGGAGCGACATTTCTCGCTT TGGAGTTTGATTGGACTCGCGGCGAATTGTACTATTTCATGGACAGGCCTTGGCTTGGGTTTGATGACTGCTATT GACGCAGGTGGTCCTGGCGCCCTGATATACGGCTTCATCCTTGTTTTCATCCTTCAATCTTTTGTCGGTGCTTCA CTGGCGGAATTTGTATCAGCATACCCTACCGAAGGAGGGATGTATCATTGGATTGCCGCCATTGCTCCCAAGCGA TATAACAGCTTGCTCAGCTTTGCCACCGGCTGGTGCACTGTATTTGGATGGATCTTTACGTCTGCATCAACCAAT TTGATTTATGCCACAACCGCCATGGCGCTGATTGCTCTTTACCATGATGACCTGGTGGTCCAACCGTGGATGACC TTTGTCGCTTATCAGATCCTCAATATCGTGACTTCGGGTGTGGTGATGTTTGGGAATCGATTTATTCCGGCAATC AACAAATTTTCATTGGTCTACCTGCAATTAGCCTGGTTTATTACCATGGTTGTCGTGGCCGCCAAAGCCCCAGTT CATAATGACAGCAAGTTCGTGTTTCGCACCTGGATCAACAACACCGGCTGGGACAACAATGTTATCTGCTTTATC ACCGGATTGGTCAATCCAATGTACTCACTTGGAGGACTAGATGGCATTTCGCACATCACAGAAGAAATGCCCAAT CCCGGAAAGAATGCCCCTTTGGGTCTAGCTATCACGCTATCAATCGCATTCGTGACCGGACTATCATATCTGCTC AGTCTAATGTTCTCAGTTCAAGATTATGGCAGCTTGGCTAACACACATACTGGACTTCCTCTTGCCGAGCTCTTC TGGCAGGCAACCTCTACAAGAGGTGGAGCATTCGGGCTGGTGTTCATGGTATGGATTGCCCTTGGGCCCTGCGTC ATAGGTTCACAGTTGAGTACCGGACGAGTCTTCTGGGCCTTTGCCCGTGACGAGGGCCTGCCTTTGTCGAAAGTA TGGGCCCGTGTCAATCCCAAGCTGGGTTCGCCGTTCAATGCGCAGCTCTGTGTTACCGTGATTATCGCCCTCCTC GGCTGTATATACTTGGGGTCGAGCACGGCATTCAATGCAATGATGAGCTCTGCGGTGACGATCAACAACTTTGCC TACCTTGTACCCATTCTGACGAATGTTCTCTTATTCCGCCGAACCATGCGCCGTGGCCCATTCTCCATGGGCCAG ACACTAGGAATGACCGTGAACATCGTCTCTTTGGCGTGGCTGGTGTTTGCCATTGTCTTTTTCTCGTTTCCGTAT CAGATGCCTGTAACTGTATCAAACATGAACTATACCTGTGTTGTTGTCGGTGGATTCTTGAGTATTGAGCTTGCT TGGTGGCTCATTGCTGGAAAGAGGTATTCTGCGACTGTACAACGAGCCAGGGAAGAAGGAACCAGCGAGACAGTA GTGATTGCTGATGGCAAATATGAATAA |
| Transcript | >Pro_DTO377G3_2|g9471.t1 ATGAGCGGCCCTGAAATTATATCTACCTCTCCGCCGGTCGGGTCTATTGGAGATGGGAAAGAGACCGAGTTTATC AAGGTGCAGAATGAGGATGAGCTGCGGTTGGCCCAGATGGGGCATAAGCAGGAGTTGGAGCGACATTTCTCGCTT TGGAGTTTGATTGGACTCGCGGCGAATTGTACTATTTCATGGACAGGCCTTGGCTTGGGTTTGATGACTGCTATT GACGCAGGTGGTCCTGGCGCCCTGATATACGGCTTCATCCTTGTTTTCATCCTTCAATCTTTTGTCGGTGCTTCA CTGGCGGAATTTGTATCAGCATACCCTACCGAAGGAGGGATGTATCATTGGATTGCCGCCATTGCTCCCAAGCGA TATAACAGCTTGCTCAGCTTTGCCACCGGCTGGTGCACTGTATTTGGATGGATCTTTACGTCTGCATCAACCAAT TTGATTTATGCCACAACCGCCATGGCGCTGATTGCTCTTTACCATGATGACCTGGTGGTCCAACCGTGGATGACC TTTGTCGCTTATCAGATCCTCAATATCGTGACTTCGGGTGTGGTGATGTTTGGGAATCGATTTATTCCGGCAATC AACAAATTTTCATTGGTCTACCTGCAATTAGCCTGGTTTATTACCATGGTTGTCGTGGCCGCCAAAGCCCCAGTT CATAATGACAGCAAGTTCGTGTTTCGCACCTGGATCAACAACACCGGCTGGGACAACAATGTTATCTGCTTTATC ACCGGATTGGTCAATCCAATGTACTCACTTGGAGGACTAGATGGCATTTCGCACATCACAGAAGAAATGCCCAAT CCCGGAAAGAATGCCCCTTTGGGTCTAGCTATCACGCTATCAATCGCATTCGTGACCGGACTATCATATCTGCTC AGTCTAATGTTCTCAGTTCAAGATTATGGCAGCTTGGCTAACACACATACTGGACTTCCTCTTGCCGAGCTCTTC TGGCAGGCAACCTCTACAAGAGGTGGAGCATTCGGGCTGGTGTTCATGGTATGGATTGCCCTTGGGCCCTGCGTC ATAGGTTCACAGTTGAGTACCGGACGAGTCTTCTGGGCCTTTGCCCGTGACGAGGGCCTGCCTTTGTCGAAAGTA TGGGCCCGTGTCAATCCCAAGCTGGGTTCGCCGTTCAATGCGCAGCTCTGTGTTACCGTGATTATCGCCCTCCTC GGCTGTATATACTTGGGGTCGAGCACGGCATTCAATGCAATGATGAGCTCTGCGGTGACGATCAACAACTTTGCC TACCTTGTACCCATTCTGACGAATGTTCTCTTATTCCGCCGAACCATGCGCCGTGGCCCATTCTCCATGGGCCAG ACACTAGGAATGACCGTGAACATCGTCTCTTTGGCGTGGCTGGTGTTTGCCATTGTCTTTTTCTCGTTTCCGTAT CAGATGCCTGTAACTGTATCAAACATGAACTATACCTGTGTTGTTGTCGGTGGATTCTTGAGTATTGAGCTTGCT TGGTGGCTCATTGCTGGAAAGAGGTATTCTGCGACTGTACAACGAGCCAGGGAAGAAGGAACCAGCGAGACAGTA GTGATTGCTGATGGCAAATATGAATAA |
| Gene | >Pro_DTO377G3_2|g9471.t1 ATGAGCGGCCCTGAAATTATATCTACCTCTCCGCCGGTCGGGTCTATTGGAGATGGGAAAGAGACCGAGTTTATC AAGGTGCAGAATGAGGATGAGCTGCGGTTGGCCCAGATGGGTATGTGTCGAATCCGGCGCTTGGGAGATATGGTA TTGACGGCGAACAGGGCATAAGCAGGAGTTGGAGCGACATTTCTCGCTTTGGAGTTTGATTGGACTCGCGGCGAA TTGTACTATTTCATGGACAGGTTAGTTGGTTCATGCAATCGCTCAGCATCCGACTCACATGGTAATAGGCCTTGG CTTGGGTTTGATGACTGCTATTGACGCAGGTGGTCCTGGCGCCCGTGAGTTTTCATTCCGTACCGATCGCATGGA AGTCAATAAATGACCAAGCGCAGTGATATACGGCTTCATCCTTGTTTTCATCCTTCAATCTTTTGTCGGTGCTTC ACTGGCGGAATTTGTATCAGCATACCCTACCGAAGGAGGGATGTATCATTGGATTGCCGCCATTGCTCCCAAGCG ATATAACAGCTTGCTCAGCTTTGCCACCGGCTGGTGCACTGTATTTGGATGTGGGTGGCCCAGCATTAAAAGTCT TAGCATGAGCTGATGAAGCCTAGGGATCTTTACGTCTGCATCAACCAATTTGATTTATGCCACAACCGCCATGGC GCTGATTGCTCTTTACCATGATGACCTGGTGGTCCAACCGTGGATGACCTTTGTCGCTTATCAGATCCTCAATAT CGTGACTTCGGGTGTGGTGATGTTTGGGAATCGATTTATTCCGGCAATCAACAAATTTTCATGTATGTGGGTTCT TTTCCTGTGTGGTTCACCAATTAATGGGTTTCAGTGGTCTACCTGCAATTAGCCTGGTTTATTACCATGGTTGTC GTGGCCGCCAAAGCCCCAGTTCATAATGACAGCAAGTTCGTGTTTCGCACCTGGATCAACAACACCGGCTGGGAC AACAATGTTATCTGCTTTATCACCGGATTGGTCAATCCAATGTACTCACTTGGAGGACTAGATGGCATTTCGGTG AGTTGTACACATTGTTAAGGTGCCCGGTTGAACGCAGCTGACCATACCACAGCACATCACAGAAGAAATGCCCAA TGTAAGTTGAGATGGCTCGGAGATACAAATCTTATGTATTGTACTAACCAGCATTTATAGCCCGGAAAGAATGCC CCTTTGGGTCTAGGTTAGTAGTGGTCGTGTTGCTTTCTTCGATAATTTGGCTAACTGTATGCATCAACAGCTATC ACGCTATCAATCGCATTCGTGACCGGACTATCATATCTGCTCAGTCTAATGTTCTCAGTTCAAGATTATGGCAGC TTGGCTAACACACATACTGGACTTCCTCTTGCCGAGCTCTTCTGGCAGGCAACCTCTACAAGAGGTGGAGCATTC GGGCTGGTGTTCATGGTATGGATTGCCCTTGGGCCCTGCGTCATAGGTTCACAGTTGAGTAAGTAGTACTTTCGT TATCGAAGACCAACCCTCTGACTTCTATAGGTACCGGACGAGTCTTCTGGGCCTTTGCCCGTGACGAGGGCCTGC CTTTGTCGAAAGTATGGGCCCGTGTCAATCCCAAGCTGGGTTCGCCGTTCAATGCGCAGCTCTGTGTTACCGTGA TTATCGCCCTCCTCGGCTGTATATACTTGGGGTCGAGCACGGCATTCAATGCAATGATGAGCTCTGCGGTGTAGG TTTTTCATACTACAAAGCAGTTAGCAACGACTTGACACTGACATGGATACAGGACGATCAACAACTTTGCCTACC TTGTACCCATTCTGACGAATGTTCTCTTATTCCGCCGAACCATGCGCCGTGGCCCATTCTCCATGGGCCAGACAC TAGGAATGACCGTGAACATCGTCTCTTTGGCGTGGCTGGTGTTTGCCATTGTCTTTTTCTCGTTTCCGTATCAGA TGCCTGTAACTGGTATGTGCTTGGTTTTCTATGATTCCTTTGTATCCTGCCCAAGCTATGTGCTAACAGCCACGC AGTATCAAACATGAACTATACCTGTGTTGTTGTCGGTGGATTCTTGAGTATTGAGCTTGCTTGGTGGCTCATTGC TGGAAAGAGGTATTCTGCGACTGTACAACGAGCCAGGGAAGAAGGAACCAGCGAGACAGTAGTGATTGCTGATGG CAAATATGAATAA |