Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9471.t1
Gene name
Locationscaffold_48:89212..91400
Strand-
Gene length (bp)2188
Transcript length (bp)1602
Coding sequence length (bp)1602
Protein length (aa) 534

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13520 AA_permease_2 Amino acid permease 2.7E-56 48 494
PF00324 AA_permease Amino acid permease 1.3E-22 65 508

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0055085 transmembrane transport Yes
GO:0022857 transmembrane transporter activity Yes
GO:0008150 biological_process No
GO:0006810 transport No
GO:0009987 cellular process No
GO:0051234 establishment of localization No
GO:0110165 cellular anatomical entity No
GO:0005215 transporter activity No
GO:0003674 molecular_function No
GO:0005575 cellular_component No
GO:0051179 localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.5

Transmembrane Domains

Domain # Start End Length
1 48 70 22
2 83 105 22
3 126 148 22
4 168 190 22
5 203 225 22
6 240 262 22
7 282 304 22
8 334 356 22
9 383 405 22
10 415 437 22
11 449 471 22
12 486 505 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 2.12 0.43 3.82
5d_25C Five days - 25 degrees Celsius 2.11 0.44 3.78
7d_25C Seven days - 25 degrees Celsius 1.62 0.21 3.02
10d_25C Ten days - 25 degrees Celsius 0.94 0.05 1.82
7d_15C Seven days - 15 degrees Celsius 1.70 0.21 3.20
7d_30C Seven days - 30 degrees Celsius 1.67 0.24 3.11

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.995217 no
3d_25C 7d_25C 0.645183 no
3d_25C 7d_15C 0.722713 no
3d_25C 7d_30C 0.695966 no
3d_25C 10d_25C 0.086818 no
5d_25C 7d_25C 0.656935 no
5d_25C 7d_15C 0.733552 no
5d_25C 7d_30C 0.705851 no
5d_25C 10d_25C 0.094135 no
7d_25C 7d_15C 0.951106 no
7d_25C 7d_30C 0.965531 no
7d_25C 10d_25C 0.317104 no
7d_15C 7d_30C 0.984005 no
7d_15C 10d_25C 0.265482 no
7d_30C 10d_25C 0.281659 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9471.t1
MSGPEIISTSPPVGSIGDGKETEFIKVQNEDELRLAQMGHKQELERHFSLWSLIGLAANCTISWTGLGLGLMTAI
DAGGPGALIYGFILVFILQSFVGASLAEFVSAYPTEGGMYHWIAAIAPKRYNSLLSFATGWCTVFGWIFTSASTN
LIYATTAMALIALYHDDLVVQPWMTFVAYQILNIVTSGVVMFGNRFIPAINKFSLVYLQLAWFITMVVVAAKAPV
HNDSKFVFRTWINNTGWDNNVICFITGLVNPMYSLGGLDGISHITEEMPNPGKNAPLGLAITLSIAFVTGLSYLL
SLMFSVQDYGSLANTHTGLPLAELFWQATSTRGGAFGLVFMVWIALGPCVIGSQLSTGRVFWAFARDEGLPLSKV
WARVNPKLGSPFNAQLCVTVIIALLGCIYLGSSTAFNAMMSSAVTINNFAYLVPILTNVLLFRRTMRRGPFSMGQ
TLGMTVNIVSLAWLVFAIVFFSFPYQMPVTVSNMNYTCVVVGGFLSIELAWWLIAGKRYSATVQRAREEGTSETV
VIADGKYE*
Coding >Pro_DTO377G3_2|g9471.t1
ATGAGCGGCCCTGAAATTATATCTACCTCTCCGCCGGTCGGGTCTATTGGAGATGGGAAAGAGACCGAGTTTATC
AAGGTGCAGAATGAGGATGAGCTGCGGTTGGCCCAGATGGGGCATAAGCAGGAGTTGGAGCGACATTTCTCGCTT
TGGAGTTTGATTGGACTCGCGGCGAATTGTACTATTTCATGGACAGGCCTTGGCTTGGGTTTGATGACTGCTATT
GACGCAGGTGGTCCTGGCGCCCTGATATACGGCTTCATCCTTGTTTTCATCCTTCAATCTTTTGTCGGTGCTTCA
CTGGCGGAATTTGTATCAGCATACCCTACCGAAGGAGGGATGTATCATTGGATTGCCGCCATTGCTCCCAAGCGA
TATAACAGCTTGCTCAGCTTTGCCACCGGCTGGTGCACTGTATTTGGATGGATCTTTACGTCTGCATCAACCAAT
TTGATTTATGCCACAACCGCCATGGCGCTGATTGCTCTTTACCATGATGACCTGGTGGTCCAACCGTGGATGACC
TTTGTCGCTTATCAGATCCTCAATATCGTGACTTCGGGTGTGGTGATGTTTGGGAATCGATTTATTCCGGCAATC
AACAAATTTTCATTGGTCTACCTGCAATTAGCCTGGTTTATTACCATGGTTGTCGTGGCCGCCAAAGCCCCAGTT
CATAATGACAGCAAGTTCGTGTTTCGCACCTGGATCAACAACACCGGCTGGGACAACAATGTTATCTGCTTTATC
ACCGGATTGGTCAATCCAATGTACTCACTTGGAGGACTAGATGGCATTTCGCACATCACAGAAGAAATGCCCAAT
CCCGGAAAGAATGCCCCTTTGGGTCTAGCTATCACGCTATCAATCGCATTCGTGACCGGACTATCATATCTGCTC
AGTCTAATGTTCTCAGTTCAAGATTATGGCAGCTTGGCTAACACACATACTGGACTTCCTCTTGCCGAGCTCTTC
TGGCAGGCAACCTCTACAAGAGGTGGAGCATTCGGGCTGGTGTTCATGGTATGGATTGCCCTTGGGCCCTGCGTC
ATAGGTTCACAGTTGAGTACCGGACGAGTCTTCTGGGCCTTTGCCCGTGACGAGGGCCTGCCTTTGTCGAAAGTA
TGGGCCCGTGTCAATCCCAAGCTGGGTTCGCCGTTCAATGCGCAGCTCTGTGTTACCGTGATTATCGCCCTCCTC
GGCTGTATATACTTGGGGTCGAGCACGGCATTCAATGCAATGATGAGCTCTGCGGTGACGATCAACAACTTTGCC
TACCTTGTACCCATTCTGACGAATGTTCTCTTATTCCGCCGAACCATGCGCCGTGGCCCATTCTCCATGGGCCAG
ACACTAGGAATGACCGTGAACATCGTCTCTTTGGCGTGGCTGGTGTTTGCCATTGTCTTTTTCTCGTTTCCGTAT
CAGATGCCTGTAACTGTATCAAACATGAACTATACCTGTGTTGTTGTCGGTGGATTCTTGAGTATTGAGCTTGCT
TGGTGGCTCATTGCTGGAAAGAGGTATTCTGCGACTGTACAACGAGCCAGGGAAGAAGGAACCAGCGAGACAGTA
GTGATTGCTGATGGCAAATATGAATAA
Transcript >Pro_DTO377G3_2|g9471.t1
ATGAGCGGCCCTGAAATTATATCTACCTCTCCGCCGGTCGGGTCTATTGGAGATGGGAAAGAGACCGAGTTTATC
AAGGTGCAGAATGAGGATGAGCTGCGGTTGGCCCAGATGGGGCATAAGCAGGAGTTGGAGCGACATTTCTCGCTT
TGGAGTTTGATTGGACTCGCGGCGAATTGTACTATTTCATGGACAGGCCTTGGCTTGGGTTTGATGACTGCTATT
GACGCAGGTGGTCCTGGCGCCCTGATATACGGCTTCATCCTTGTTTTCATCCTTCAATCTTTTGTCGGTGCTTCA
CTGGCGGAATTTGTATCAGCATACCCTACCGAAGGAGGGATGTATCATTGGATTGCCGCCATTGCTCCCAAGCGA
TATAACAGCTTGCTCAGCTTTGCCACCGGCTGGTGCACTGTATTTGGATGGATCTTTACGTCTGCATCAACCAAT
TTGATTTATGCCACAACCGCCATGGCGCTGATTGCTCTTTACCATGATGACCTGGTGGTCCAACCGTGGATGACC
TTTGTCGCTTATCAGATCCTCAATATCGTGACTTCGGGTGTGGTGATGTTTGGGAATCGATTTATTCCGGCAATC
AACAAATTTTCATTGGTCTACCTGCAATTAGCCTGGTTTATTACCATGGTTGTCGTGGCCGCCAAAGCCCCAGTT
CATAATGACAGCAAGTTCGTGTTTCGCACCTGGATCAACAACACCGGCTGGGACAACAATGTTATCTGCTTTATC
ACCGGATTGGTCAATCCAATGTACTCACTTGGAGGACTAGATGGCATTTCGCACATCACAGAAGAAATGCCCAAT
CCCGGAAAGAATGCCCCTTTGGGTCTAGCTATCACGCTATCAATCGCATTCGTGACCGGACTATCATATCTGCTC
AGTCTAATGTTCTCAGTTCAAGATTATGGCAGCTTGGCTAACACACATACTGGACTTCCTCTTGCCGAGCTCTTC
TGGCAGGCAACCTCTACAAGAGGTGGAGCATTCGGGCTGGTGTTCATGGTATGGATTGCCCTTGGGCCCTGCGTC
ATAGGTTCACAGTTGAGTACCGGACGAGTCTTCTGGGCCTTTGCCCGTGACGAGGGCCTGCCTTTGTCGAAAGTA
TGGGCCCGTGTCAATCCCAAGCTGGGTTCGCCGTTCAATGCGCAGCTCTGTGTTACCGTGATTATCGCCCTCCTC
GGCTGTATATACTTGGGGTCGAGCACGGCATTCAATGCAATGATGAGCTCTGCGGTGACGATCAACAACTTTGCC
TACCTTGTACCCATTCTGACGAATGTTCTCTTATTCCGCCGAACCATGCGCCGTGGCCCATTCTCCATGGGCCAG
ACACTAGGAATGACCGTGAACATCGTCTCTTTGGCGTGGCTGGTGTTTGCCATTGTCTTTTTCTCGTTTCCGTAT
CAGATGCCTGTAACTGTATCAAACATGAACTATACCTGTGTTGTTGTCGGTGGATTCTTGAGTATTGAGCTTGCT
TGGTGGCTCATTGCTGGAAAGAGGTATTCTGCGACTGTACAACGAGCCAGGGAAGAAGGAACCAGCGAGACAGTA
GTGATTGCTGATGGCAAATATGAATAA
Gene >Pro_DTO377G3_2|g9471.t1
ATGAGCGGCCCTGAAATTATATCTACCTCTCCGCCGGTCGGGTCTATTGGAGATGGGAAAGAGACCGAGTTTATC
AAGGTGCAGAATGAGGATGAGCTGCGGTTGGCCCAGATGGGTATGTGTCGAATCCGGCGCTTGGGAGATATGGTA
TTGACGGCGAACAGGGCATAAGCAGGAGTTGGAGCGACATTTCTCGCTTTGGAGTTTGATTGGACTCGCGGCGAA
TTGTACTATTTCATGGACAGGTTAGTTGGTTCATGCAATCGCTCAGCATCCGACTCACATGGTAATAGGCCTTGG
CTTGGGTTTGATGACTGCTATTGACGCAGGTGGTCCTGGCGCCCGTGAGTTTTCATTCCGTACCGATCGCATGGA
AGTCAATAAATGACCAAGCGCAGTGATATACGGCTTCATCCTTGTTTTCATCCTTCAATCTTTTGTCGGTGCTTC
ACTGGCGGAATTTGTATCAGCATACCCTACCGAAGGAGGGATGTATCATTGGATTGCCGCCATTGCTCCCAAGCG
ATATAACAGCTTGCTCAGCTTTGCCACCGGCTGGTGCACTGTATTTGGATGTGGGTGGCCCAGCATTAAAAGTCT
TAGCATGAGCTGATGAAGCCTAGGGATCTTTACGTCTGCATCAACCAATTTGATTTATGCCACAACCGCCATGGC
GCTGATTGCTCTTTACCATGATGACCTGGTGGTCCAACCGTGGATGACCTTTGTCGCTTATCAGATCCTCAATAT
CGTGACTTCGGGTGTGGTGATGTTTGGGAATCGATTTATTCCGGCAATCAACAAATTTTCATGTATGTGGGTTCT
TTTCCTGTGTGGTTCACCAATTAATGGGTTTCAGTGGTCTACCTGCAATTAGCCTGGTTTATTACCATGGTTGTC
GTGGCCGCCAAAGCCCCAGTTCATAATGACAGCAAGTTCGTGTTTCGCACCTGGATCAACAACACCGGCTGGGAC
AACAATGTTATCTGCTTTATCACCGGATTGGTCAATCCAATGTACTCACTTGGAGGACTAGATGGCATTTCGGTG
AGTTGTACACATTGTTAAGGTGCCCGGTTGAACGCAGCTGACCATACCACAGCACATCACAGAAGAAATGCCCAA
TGTAAGTTGAGATGGCTCGGAGATACAAATCTTATGTATTGTACTAACCAGCATTTATAGCCCGGAAAGAATGCC
CCTTTGGGTCTAGGTTAGTAGTGGTCGTGTTGCTTTCTTCGATAATTTGGCTAACTGTATGCATCAACAGCTATC
ACGCTATCAATCGCATTCGTGACCGGACTATCATATCTGCTCAGTCTAATGTTCTCAGTTCAAGATTATGGCAGC
TTGGCTAACACACATACTGGACTTCCTCTTGCCGAGCTCTTCTGGCAGGCAACCTCTACAAGAGGTGGAGCATTC
GGGCTGGTGTTCATGGTATGGATTGCCCTTGGGCCCTGCGTCATAGGTTCACAGTTGAGTAAGTAGTACTTTCGT
TATCGAAGACCAACCCTCTGACTTCTATAGGTACCGGACGAGTCTTCTGGGCCTTTGCCCGTGACGAGGGCCTGC
CTTTGTCGAAAGTATGGGCCCGTGTCAATCCCAAGCTGGGTTCGCCGTTCAATGCGCAGCTCTGTGTTACCGTGA
TTATCGCCCTCCTCGGCTGTATATACTTGGGGTCGAGCACGGCATTCAATGCAATGATGAGCTCTGCGGTGTAGG
TTTTTCATACTACAAAGCAGTTAGCAACGACTTGACACTGACATGGATACAGGACGATCAACAACTTTGCCTACC
TTGTACCCATTCTGACGAATGTTCTCTTATTCCGCCGAACCATGCGCCGTGGCCCATTCTCCATGGGCCAGACAC
TAGGAATGACCGTGAACATCGTCTCTTTGGCGTGGCTGGTGTTTGCCATTGTCTTTTTCTCGTTTCCGTATCAGA
TGCCTGTAACTGGTATGTGCTTGGTTTTCTATGATTCCTTTGTATCCTGCCCAAGCTATGTGCTAACAGCCACGC
AGTATCAAACATGAACTATACCTGTGTTGTTGTCGGTGGATTCTTGAGTATTGAGCTTGCTTGGTGGCTCATTGC
TGGAAAGAGGTATTCTGCGACTGTACAACGAGCCAGGGAAGAAGGAACCAGCGAGACAGTAGTGATTGCTGATGG
CAAATATGAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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