© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g9464.t1 |
| Gene name | |
| Location | scaffold_48:78183..79381 |
| Strand | + |
| Gene length (bp) | 1198 |
| Transcript length (bp) | 939 |
| Coding sequence length (bp) | 939 |
| Protein length (aa) | 313 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 1.1E-05 | 7 | 44 |
| PF00106 | adh_short | short chain dehydrogenase | 3.0E-20 | 55 | 206 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 4.9E-23 | 12 | 200 |
| PF08659 | KR | KR domain | 4.9E-05 | 8 | 110 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 10.64 | 3.84 | 17.43 |
| 5d_25C | Five days - 25 degrees Celsius | 11.20 | 4.00 | 18.40 |
| 7d_25C | Seven days - 25 degrees Celsius | 11.60 | 3.85 | 19.34 |
| 10d_25C | Ten days - 25 degrees Celsius | 7.36 | 2.25 | 12.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 16.70 | 6.40 | 27.00 |
| 7d_30C | Seven days - 30 degrees Celsius | 17.61 | 7.46 | 27.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.926712 | no |
| 3d_25C | 7d_25C | 0.876511 | no |
| 3d_25C | 7d_15C | 0.232656 | no |
| 3d_25C | 7d_30C | 0.149515 | no |
| 3d_25C | 10d_25C | 0.374080 | no |
| 5d_25C | 7d_25C | 0.952757 | no |
| 5d_25C | 7d_15C | 0.296401 | no |
| 5d_25C | 7d_30C | 0.201552 | no |
| 5d_25C | 10d_25C | 0.288162 | no |
| 7d_25C | 7d_15C | 0.375489 | no |
| 7d_25C | 7d_30C | 0.272394 | no |
| 7d_25C | 10d_25C | 0.262088 | no |
| 7d_15C | 7d_30C | 0.919573 | no |
| 7d_15C | 10d_25C | 0.019624 | yes |
| 7d_30C | 10d_25C | 0.007779 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9464.t1 MSQTQQVTLIIGASRGIGRQIAIDLAKNGYAVMLSAKTTSDASTVTPFPPDPNSSQSTINTVEREIHEAGGHAAT VAVDVRDAAQIQHAVDETVRVFGKLDVLVYNSGAIWWSSVEKTPLKRFKLMQQVNPEGLYASVQAALPFFEKGGW KGRIIVVSPPIYSRFFSGKTAYAMGKVAMSVLVKGLAMDFVRQGRNEMAVTSIWPASSIESAATEYNKGSDTSYK KDLRKPTIFSDAVLAMLRAPHQTVNGLLDTDEDFLREKCGVSDFSKYSVIPGSTPRRIMPAKFPVLEIAEQDDEG QRMDSTKLRAKI* |
| Coding | >Pro_DTO377G3_2|g9464.t1 ATGTCCCAAACACAGCAAGTCACCCTGATAATAGGAGCATCACGCGGGATCGGGCGCCAAATTGCCATCGACCTA GCAAAGAACGGCTACGCCGTAATGCTATCCGCAAAAACAACATCGGACGCATCGACAGTGACTCCGTTCCCACCA GACCCGAACTCATCGCAGTCTACCATCAACACAGTAGAGCGCGAGATTCACGAAGCGGGCGGACACGCGGCAACA GTCGCCGTTGACGTGCGTGACGCCGCACAGATCCAGCATGCTGTCGACGAGACGGTTCGCGTCTTTGGGAAGCTC GATGTGCTCGTGTACAACTCCGGTGCGATCTGGTGGTCTTCTGTGGAGAAGACGCCTCTGAAGCGGTTTAAGCTT ATGCAGCAGGTCAACCCCGAGGGACTGTATGCGAGTGTTCAAGCTGCTTTGCCTTTCTTTGAGAAGGGGGGCTGG AAAGGGCGCATTATTGTTGTATCGCCGCCTATTTACTCGAGGTTCTTTAGTGGGAAGACTGCTTATGCGATGGGC AAAGTCGCAATGAGTGTCTTGGTCAAAGGACTGGCCATGGACTTTGTACGCCAAGGCCGAAATGAAATGGCGGTG ACGAGTATCTGGCCTGCATCGTCGATTGAATCAGCAGCTACAGAGTATAATAAGGGATCCGACACATCCTACAAA AAGGATTTGAGAAAACCGACGATATTCTCAGATGCTGTTCTGGCTATGCTTCGTGCCCCACATCAAACAGTGAAT GGGCTCCTGGATACAGATGAGGACTTTCTCAGGGAGAAATGCGGAGTCTCTGACTTTTCCAAATACTCTGTAATC CCAGGATCGACGCCACGGCGGATCATGCCGGCCAAGTTCCCAGTCTTGGAGATTGCAGAGCAAGACGATGAAGGG CAGCGAATGGATAGCACGAAGTTACGGGCCAAGATATAG |
| Transcript | >Pro_DTO377G3_2|g9464.t1 ATGTCCCAAACACAGCAAGTCACCCTGATAATAGGAGCATCACGCGGGATCGGGCGCCAAATTGCCATCGACCTA GCAAAGAACGGCTACGCCGTAATGCTATCCGCAAAAACAACATCGGACGCATCGACAGTGACTCCGTTCCCACCA GACCCGAACTCATCGCAGTCTACCATCAACACAGTAGAGCGCGAGATTCACGAAGCGGGCGGACACGCGGCAACA GTCGCCGTTGACGTGCGTGACGCCGCACAGATCCAGCATGCTGTCGACGAGACGGTTCGCGTCTTTGGGAAGCTC GATGTGCTCGTGTACAACTCCGGTGCGATCTGGTGGTCTTCTGTGGAGAAGACGCCTCTGAAGCGGTTTAAGCTT ATGCAGCAGGTCAACCCCGAGGGACTGTATGCGAGTGTTCAAGCTGCTTTGCCTTTCTTTGAGAAGGGGGGCTGG AAAGGGCGCATTATTGTTGTATCGCCGCCTATTTACTCGAGGTTCTTTAGTGGGAAGACTGCTTATGCGATGGGC AAAGTCGCAATGAGTGTCTTGGTCAAAGGACTGGCCATGGACTTTGTACGCCAAGGCCGAAATGAAATGGCGGTG ACGAGTATCTGGCCTGCATCGTCGATTGAATCAGCAGCTACAGAGTATAATAAGGGATCCGACACATCCTACAAA AAGGATTTGAGAAAACCGACGATATTCTCAGATGCTGTTCTGGCTATGCTTCGTGCCCCACATCAAACAGTGAAT GGGCTCCTGGATACAGATGAGGACTTTCTCAGGGAGAAATGCGGAGTCTCTGACTTTTCCAAATACTCTGTAATC CCAGGATCGACGCCACGGCGGATCATGCCGGCCAAGTTCCCAGTCTTGGAGATTGCAGAGCAAGACGATGAAGGG CAGCGAATGGATAGCACGAAGTTACGGGCCAAGATATAG |
| Gene | >Pro_DTO377G3_2|g9464.t1 ATGTCCCAAACACAGCAAGTCACCCTGATAATAGGAGCATCACGCGGGATCGGGCGCCAAATTGCCATCGACCTA GCAAAGAACGGCTACGCCGGTACAGCCACATGCAATCCCACATAGACCATCGAGACTAACCCCAAACCCCAGTAA TGCTATCCGCAAAAACAACATCGGACGCATCGACAGTGACTCCGTTCCCACCAGACCCGAACTCATCGCAGTCTA CCATCAACACAGTAGAGCGCGAGATTCACGAAGCGGGCGGACACGCGGCAACAGTCGCCGTTGACGTGCGTGACG CCGCACAGATCCAGCATGCTGTCGACGAGACGGTTCGCGTCTTTGGGAAGCTCGATGTGCTCGTGTACAACTCCG GTGCGATCTGGTGGTCTTCTGTGGAGAAGACGCCTCTGAAGCGGTTTAAGCTTATGCAGCAGGTCAACCCCGAGG GACTGTATGCGAGTGTTCAAGCTGCTTTGCCTTTCTTTGAGAAGGGGGGCTGGAAAGGGCGCATTATTGTTGTAT CGCCGCCTATTTACTCGAGGTTCTTTAGTGGGAAGACTGCTTATGCGATGGGTGAGTTACCCTTGATACGTGGGG TAGAGGATCCACATAGAGTGTGTGCTGATGATGTGTTGTATGTAGGCAAAGTCGCAATGAGTGTCTTGGTCAAAG GACTGGCCATGGACTTTGTACGCCAAGGCCGAAATGAAATGGCGGTGACGAGTATCTGGCCTGCATCGGTATGTG TCTTGGTCTTGATTCCATCCGGACGTGGAGTGCATGAGGGGATTGCTGACTGCATCATTACTTCCTAGTCGATTG AATCAGCAGCTACAGAGTATAATAAGGGATCCGACACATCCTACAAAAAGGATTTGAGAAAACCGGTATGTCCAT TTCGATACTGTCTACACTTCCTGGTCAATTCAATACTGACACGATGCAATAGACGATATTCTCAGATGCTGTTCT GGCTATGCTTCGTGCCCCACATCAAACAGTGAATGGGCTCCTGGATACAGATGAGGACTTTCTCAGGGAGAAATG CGGAGTCTCTGACTTTTCCAAATACTCTGTAATCCCAGGATCGACGCCACGGCGGATCATGCCGGCCAAGTTCCC AGTCTTGGAGATTGCAGAGCAAGACGATGAAGGGCAGCGAATGGATAGCACGAAGTTACGGGCCAAGATATAG |