© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g946.t1 |
| Gene name | |
| Location | scaffold_01:2501888..2504122 |
| Strand | - |
| Gene length (bp) | 2234 |
| Transcript length (bp) | 1719 |
| Coding sequence length (bp) | 1719 |
| Protein length (aa) | 573 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00012 | HSP70 | Hsp70 protein | 4.1E-13 | 154 | 407 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0140662 | ATP-dependent protein folding chaperone | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0044183 | protein folding chaperone | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.82 | 0.0 | 1.65 |
| 5d_25C | Five days - 25 degrees Celsius | 0.16 | 0.0 | 0.42 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.27 | 0.0 | 0.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.05 | 0.0 | 0.17 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.34 | 0.0 | 0.82 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.35 | 0.0 | 0.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.105675 | no |
| 3d_25C | 7d_25C | 0.176676 | no |
| 3d_25C | 7d_15C | 0.225367 | no |
| 3d_25C | 7d_30C | 0.250218 | no |
| 3d_25C | 10d_25C | 0.193405 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 1.000000 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 1.000000 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 1.000000 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g946.t1 MEAKHGYKLVVGVDYGTTFTEIAYVLTTHAGGQADIDSIDFIKQWPPDIIGQAKTPSLISYMQDGGAPLWGFEVT QDVRSYAWTKLLLDANFPSSSKFDDTFLKIATASKILELPDQKEAVDTVQDYLSQIYTHIQSYISAELDLSGVPI DFWFTTPASWSEDTQNLMRQAIQGAGFGKRPQHRVWTIPEPEAAALAVFSDKRVSFKPRDGILICDCGGGTVDIT TYYVTDVDPTISLEQITTVMGANCGGTAIDSRFYELLSTRVEGGFDSLSLSEIRPGSRAMKKFERIKTHFNSATS QSWHFDFNLNSQSPSQRRGRVVLQAEDVRDLYEPVLRNIFDLILSQITAANEKCGRHVIKKVVLVGGFSASSYLQ ESLGSALNRIGISVLIPENPEEAIARGAAVQGLRGYSLPTYKCWRNYGLASFQSFSHPNEPQFLGYGPSALSVNL LPCWVLRKDQNYPKGFQSTHSIQVLHWEHDLLTKPVEIYESNLSDAPERFENSDAHCIDYIQCHFDHLDLASFPH RTIAGHTVYYLELLIQVSVSMTDRVIHFSAFANGNVIGQKDLVMAHD* |
| Coding | >Pro_DTO377G3_2|g946.t1 ATGGAAGCTAAGCATGGGTACAAGCTTGTTGTGGGTGTGGACTACGGTACCACCTTCACAGAAATCGCATATGTC CTTACAACTCATGCAGGCGGTCAAGCAGATATTGACAGTATCGATTTTATCAAGCAGTGGCCTCCAGATATTATT GGTCAGGCCAAAACCCCATCCCTAATTTCATATATGCAGGACGGAGGAGCCCCTCTCTGGGGCTTTGAGGTCACG CAAGATGTACGATCATATGCCTGGACGAAGCTGCTATTGGACGCAAACTTTCCAAGTAGCAGCAAGTTCGACGAT ACATTCCTGAAGATCGCCACTGCTTCAAAGATTCTGGAGCTGCCTGACCAGAAGGAAGCCGTGGACACTGTGCAA GATTATCTTTCTCAGATCTACACACACATCCAGAGCTATATCTCCGCCGAACTGGATCTAAGTGGAGTGCCGATC GATTTCTGGTTCACGACGCCGGCCAGCTGGTCCGAAGACACGCAGAACCTCATGCGTCAAGCAATCCAAGGAGCC GGCTTTGGAAAAAGGCCTCAACATCGAGTGTGGACCATACCGGAACCAGAGGCTGCAGCTCTTGCTGTTTTCAGT GACAAAAGGGTCAGTTTCAAGCCTCGTGATGGAATTCTGATCTGTGACTGTGGAGGTGGTACAGTGGATATCACA ACATACTATGTCACAGACGTTGATCCGACAATCTCCCTTGAGCAGATCACCACCGTTATGGGGGCTAACTGTGGT GGGACTGCTATTGACAGTCGATTCTATGAACTACTGTCCACTAGAGTTGAAGGGGGATTCGATTCCCTATCCCTG AGCGAGATCCGACCAGGGAGCCGCGCCATGAAAAAGTTTGAAAGGATCAAGACTCATTTCAATAGTGCAACGAGT CAGTCTTGGCACTTTGATTTCAACTTGAATTCCCAGTCTCCCAGCCAAAGACGAGGACGTGTTGTTCTTCAAGCC GAAGATGTCCGAGACCTATACGAGCCTGTTCTGAGAAATATTTTCGACTTGATTCTGTCCCAGATCACTGCTGCA AATGAGAAGTGTGGACGGCATGTCATCAAAAAAGTTGTCTTGGTTGGCGGATTCAGCGCCTCATCCTATCTGCAG GAAAGCCTAGGATCTGCCCTCAATCGCATCGGCATTTCCGTGCTTATTCCTGAGAACCCGGAGGAGGCTATCGCT CGTGGGGCAGCAGTCCAAGGCCTTCGGGGCTACTCTCTTCCGACCTACAAGTGCTGGCGAAATTACGGCCTCGCA TCGTTTCAAAGTTTCTCCCACCCCAATGAACCGCAATTCCTGGGATATGGGCCTAGCGCACTATCGGTGAATTTG CTCCCCTGTTGGGTGTTACGCAAGGACCAGAACTACCCAAAGGGATTTCAGTCCACCCATAGCATCCAGGTACTT CATTGGGAGCATGATCTTCTTACCAAACCCGTGGAGATTTATGAGTCCAATCTCTCAGATGCACCAGAGCGGTTT GAAAACTCCGATGCTCATTGCATCGATTATATTCAATGTCACTTCGATCACCTTGACCTTGCCTCGTTTCCTCAC CGAACCATCGCCGGACATACCGTCTATTACTTGGAGCTTTTGATCCAGGTATCTGTGTCAATGACCGATCGGGTG ATACATTTCAGTGCATTTGCAAATGGTAATGTAATAGGACAAAAGGACCTGGTCATGGCCCATGATTGA |
| Transcript | >Pro_DTO377G3_2|g946.t1 ATGGAAGCTAAGCATGGGTACAAGCTTGTTGTGGGTGTGGACTACGGTACCACCTTCACAGAAATCGCATATGTC CTTACAACTCATGCAGGCGGTCAAGCAGATATTGACAGTATCGATTTTATCAAGCAGTGGCCTCCAGATATTATT GGTCAGGCCAAAACCCCATCCCTAATTTCATATATGCAGGACGGAGGAGCCCCTCTCTGGGGCTTTGAGGTCACG CAAGATGTACGATCATATGCCTGGACGAAGCTGCTATTGGACGCAAACTTTCCAAGTAGCAGCAAGTTCGACGAT ACATTCCTGAAGATCGCCACTGCTTCAAAGATTCTGGAGCTGCCTGACCAGAAGGAAGCCGTGGACACTGTGCAA GATTATCTTTCTCAGATCTACACACACATCCAGAGCTATATCTCCGCCGAACTGGATCTAAGTGGAGTGCCGATC GATTTCTGGTTCACGACGCCGGCCAGCTGGTCCGAAGACACGCAGAACCTCATGCGTCAAGCAATCCAAGGAGCC GGCTTTGGAAAAAGGCCTCAACATCGAGTGTGGACCATACCGGAACCAGAGGCTGCAGCTCTTGCTGTTTTCAGT GACAAAAGGGTCAGTTTCAAGCCTCGTGATGGAATTCTGATCTGTGACTGTGGAGGTGGTACAGTGGATATCACA ACATACTATGTCACAGACGTTGATCCGACAATCTCCCTTGAGCAGATCACCACCGTTATGGGGGCTAACTGTGGT GGGACTGCTATTGACAGTCGATTCTATGAACTACTGTCCACTAGAGTTGAAGGGGGATTCGATTCCCTATCCCTG AGCGAGATCCGACCAGGGAGCCGCGCCATGAAAAAGTTTGAAAGGATCAAGACTCATTTCAATAGTGCAACGAGT CAGTCTTGGCACTTTGATTTCAACTTGAATTCCCAGTCTCCCAGCCAAAGACGAGGACGTGTTGTTCTTCAAGCC GAAGATGTCCGAGACCTATACGAGCCTGTTCTGAGAAATATTTTCGACTTGATTCTGTCCCAGATCACTGCTGCA AATGAGAAGTGTGGACGGCATGTCATCAAAAAAGTTGTCTTGGTTGGCGGATTCAGCGCCTCATCCTATCTGCAG GAAAGCCTAGGATCTGCCCTCAATCGCATCGGCATTTCCGTGCTTATTCCTGAGAACCCGGAGGAGGCTATCGCT CGTGGGGCAGCAGTCCAAGGCCTTCGGGGCTACTCTCTTCCGACCTACAAGTGCTGGCGAAATTACGGCCTCGCA TCGTTTCAAAGTTTCTCCCACCCCAATGAACCGCAATTCCTGGGATATGGGCCTAGCGCACTATCGGTGAATTTG CTCCCCTGTTGGGTGTTACGCAAGGACCAGAACTACCCAAAGGGATTTCAGTCCACCCATAGCATCCAGGTACTT CATTGGGAGCATGATCTTCTTACCAAACCCGTGGAGATTTATGAGTCCAATCTCTCAGATGCACCAGAGCGGTTT GAAAACTCCGATGCTCATTGCATCGATTATATTCAATGTCACTTCGATCACCTTGACCTTGCCTCGTTTCCTCAC CGAACCATCGCCGGACATACCGTCTATTACTTGGAGCTTTTGATCCAGGTATCTGTGTCAATGACCGATCGGGTG ATACATTTCAGTGCATTTGCAAATGGTAATGTAATAGGACAAAAGGACCTGGTCATGGCCCATGATTGA |
| Gene | >Pro_DTO377G3_2|g946.t1 ATGGAAGCTAAGCATGGGTACAAGCTTGTTGTGGGTGTGGACTACGGTACCACCTTCACAGGTAAGCAAATACAT TTTCCTTCAACAAACCATTCATTTCTTTCACTAACGAATTCTCTTGGGAAATAGAAATCGCATATGTCCTTACAA CTCATGCAGGCGGTCAAGCAGATATTGACAGTATCGATTTTATCAAGCAGTGGCCTCCAGATATTATTGGTCAGG CCAAAACCCCATCCCTAATTTCATATATGCAGGACGGAGGAGCCCCTCTCTGGGGCTTTGAGGTCACGCAAGATG TACGATCATATGCCTGGACGAAGCTGCTATTGGACGCAAACTTTCCAAGTAGCAGCAAGTTCGACGATACATTCC TGAAGATCGCCACTGCTTCAAAGATTCTGGAGCTGCCTGACCAGAAGGAAGCCGTGGACACTGTGCAAGATTATC TTTCTCAGATCTACACACACATCCAGAGCTATATCTCCGCCGAACTGGATCTAAGTGGAGTGCCGATCGATTTCT GGTTCACGACGCCGGCCAGCTGGTCCGAAGACACGCAGAACCTCATGCGTCAAGCAATCCAAGGAGCCGGCTTTG GAAAAAGGCCTCAACATCGAGTGTGGACCATACCGGAACCAGAGGCTGCAGCTCTTGCTGTTTTCAGTGACAAAA GGGTCAGTTTCAAGGTAAGTAAAAATTCTCAACTCGGTGTCTTCGGTTCGTTTAGCTAAACATCTTATCCATTCA ACCCTTAGCCTCGTGATGGAATTCTGATCTGTGACTGTGGAGGTGGTACAGTGGTGAGATACCCGATTATACCGT TGAAACTTCATAATCTTACACTGTGATTAGGATATCACAACATACTATGTCACAGACGTTGATCCGACAATCTCC CTTGAGCAGATCACCACCGTTATGGGTAAGTTATACACAAGATTTAATTAACACGGACTGAGCACTAATACGCAA CAGGGGCTAACTGTGGTGGGACTGCTATTGACAGTCGATTCTATGAACTACTGTCCACTAGAGTTGAAGGGGGAT TCGATTCCCTATCCCTGAGCGAGATCCGACCAGGGAGCCGCGCCATGAAAAAGTTTGAAAGGATCAAGACTCATT TCAATAGTGCAACGAGTCAGTCTTGGCACTTTGATTTCAACTTGAATTCCCAGTCTCCCAGCCAAAGACGAGGAC GTGTTGTTCTTCAAGCCGAAGATGTCCGAGACCTATACGAGCCTGTTCTGAGAAATATTTTCGACTTGATTCTGT CCCAGATCACTGCTGCAAATGAGAAGTGTGGACGGCATGTCATCAAAGTGAGCGTCTCTTTTATCCTTGCTTTGT GGGGTACTTATGAAACTAACATTATCATCTTCTATAGAAAGTTGTCTTGGTTGGCGGATTCAGCGCCTCATCCTA TCTGCAGGAAAGCCTAGGATCTGCCCTCAATCGCATCGGCATTTCCGTGCTTATTCCTGAGAACCCGTGAGCGAA AATATCTTTTGGATGCTACAAAGTTAGCGAGAAGTCTAACATGTATATCAAAGGGAGGAGGCTATCGCTCGTGGG GCAGCAGTCCAAGGCCTTCGGGGCTACTCTCTTCCGACCTACAAGTGCTGGCGAAATTACGGCCTCGCATCGTTT CAAAGTTTCTCCCACCCCAATGAACCGCAATTCCTGGGATATGGGCCTAGCGCACTATCGGTGAATTTGCTCCCC TGTTGGGTGTTACGCAAGGTGTGTATTATCCAAGTGTCCGCAACCACCCTGTACGATCTGACAGATCGTTTCCAA AAAAAAGGACCAGAACTACCCAAAGGGATTTCAGTCCACCCATAGCATCCAGGTACTTCATTGGGAGCATGATCT TCTTACCAAACCCGTGGAGATTTATGAGTCCAATCTCTCAGATGCACCAGAGCGGTTTGAAAACTCCGGTAAGTC CAATGTTTTCAACCACAAAACATATGCATATCTTTATAAGCAGTGATTGGGAATGCTGAGAGAAGTTCATTATAG ATGCTCATTGCATCGATTATATTCAATGTCACTTCGATCACCTTGACCTTGCCTCGTTTCCTCACCGAACCATCG CCGGACATACCGTCTATTACTTGGAGCTTTTGATCCAGGTATCTGTGTCAATGACCGATCGGGTGATACATTTCA GTGCATTTGCAAATGGTAATGTAATAGGACAAAAGGACCTGGTCATGGCCCATGATTGA |