© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g9454.t1 |
| Gene name | |
| Location | scaffold_48:44698..46692 |
| Strand | - |
| Gene length (bp) | 1994 |
| Transcript length (bp) | 1725 |
| Coding sequence length (bp) | 1725 |
| Protein length (aa) | 575 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01384 | PHO4 | Phosphate transporter family | 9.4E-122 | 24 | 556 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005315 | inorganic phosphate transmembrane transporter activity | Yes |
| GO:0006817 | phosphate ion transport | Yes |
| GO:0006820 | anion transport | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0015291 | secondary active transmembrane transporter activity | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0015698 | inorganic anion transport | No |
| GO:0006811 | ion transport | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
| 2 | 47 | 66 | 19 |
| 3 | 86 | 105 | 19 |
| 4 | 117 | 139 | 22 |
| 5 | 149 | 171 | 22 |
| 6 | 183 | 205 | 22 |
| 7 | 220 | 242 | 22 |
| 8 | 452 | 474 | 22 |
| 9 | 489 | 506 | 17 |
| 10 | 541 | 563 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.15 | 0.14 | 2.16 |
| 5d_25C | Five days - 25 degrees Celsius | 8.72 | 3.64 | 13.81 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.87 | 4.77 | 16.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 31.28 | 17.91 | 44.66 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.22 | 2.06 | 10.38 |
| 7d_30C | Seven days - 30 degrees Celsius | 12.26 | 5.59 | 18.94 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.561238 | no |
| 5d_25C | 7d_15C | 0.388708 | no |
| 5d_25C | 7d_30C | 0.312235 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.106747 | no |
| 7d_25C | 7d_30C | 0.768770 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.047323 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 8120 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9454.t1 MVLQQYDYIFAIGTIFAFLDAWNIGANDCANSWSTSVSSRSLKHWQAMILASIMEFAGAVGVGNSVSDTIRTKIV KIDAFADNAPLLMLGMCCAVVASSLYLTFCTKIGLPVSTTHSILGGILGMGIALIGADDIIWWGGDINSGVVQVF LAWVIAPILSGVAGALIFLITKYGILLRKNPALRALYTIPFYFLLTTGLLTMLIVWKGGSSRINLEGREIAGTVI GVGVGMALISALFLCPWIYRRVIMGDWQLKPWDLIYGPLLFRRGEVPAPPDRVETVRNYYRGHKTLEELEAERST DVEKSHNSNSEPGSPDLKAEPQVTANSDNGTQAVDPDVINICGPRPEGAWYSGPVLFWLLKKALLNGVEQDIVSA QKSDSKLAGDLEKTHAHADHYDNEAEYMFSFLQILTACTASFTHGANDVANAVGPYATIYAIWRTGALEGAKTEV PIWILVFGGAAISIGIWTYGYHIMRNLGNRLTLHSPSRGFAMELGAAIAVIIATRLKLPVSTTQCITGATVGVGL CNGTWRTINWRMVAWIYMGWIITLPCAGIIAGCLTGIIVNAPRWGMSGV* |
| Coding | >Pro_DTO377G3_2|g9454.t1 ATGGTTCTTCAGCAGTATGATTACATCTTCGCCATTGGCACGATATTCGCGTTCCTCGATGCATGGAACATCGGC GCCAATGATTGCGCCAACTCCTGGTCGACGTCTGTTTCGTCGCGTTCGCTAAAGCACTGGCAAGCCATGATCCTC GCATCTATCATGGAGTTTGCCGGAGCTGTCGGTGTAGGAAACAGTGTTTCTGATACTATCCGTACCAAGATCGTC AAGATCGATGCCTTCGCCGACAACGCCCCCCTCCTCATGCTTGGAATGTGCTGCGCTGTAGTTGCCTCCTCTCTA TATCTTACCTTCTGTACTAAGATCGGTCTTCCTGTTTCGACAACCCACTCCATTCTCGGTGGTATCCTTGGGATG GGTATCGCGCTTATCGGTGCTGATGATATTATCTGGTGGGGAGGTGATATCAACTCCGGTGTTGTCCAGGTGTTC CTTGCCTGGGTGATTGCACCCATCTTATCTGGTGTTGCCGGTGCGCTTATCTTTTTGATCACCAAGTATGGTATC CTACTGCGGAAGAATCCCGCACTCAGGGCGTTATACACCATTCCATTCTACTTCCTTCTGACGACTGGCCTCCTT ACTATGCTCATTGTCTGGAAGGGTGGCAGTAGCAGGATTAACCTCGAGGGGCGTGAGATAGCCGGAACTGTTATT GGTGTTGGTGTTGGCATGGCTCTTATCTCGGCCCTCTTCCTTTGCCCCTGGATCTACCGCAGGGTGATTATGGGT GACTGGCAGCTCAAGCCTTGGGACCTAATCTACGGCCCTCTTCTCTTCCGCCGTGGTGAAGTTCCTGCACCTCCC GACCGTGTTGAGACCGTCCGTAACTACTATCGCGGCCACAAGACCCTAGAGGAACTGGAAGCTGAGCGTTCCACT GATGTGGAAAAGAGCCACAACAGCAACAGCGAGCCTGGTTCCCCCGATCTCAAGGCAGAGCCCCAGGTCACTGCC AACTCGGATAACGGGACGCAAGCCGTGGATCCCGATGTCATTAACATTTGTGGTCCTCGTCCCGAAGGAGCATGG TATAGTGGTCCTGTCCTGTTCTGGCTGCTGAAGAAGGCCCTCCTAAACGGTGTCGAGCAAGACATTGTTAGCGCC CAGAAGAGCGATAGCAAACTCGCTGGCGATCTCGAGAAGACCCATGCCCATGCTGATCACTATGATAACGAAGCG GAGTACATGTTCTCTTTCCTCCAGATTCTGACAGCCTGTACCGCTTCTTTCACCCACGGTGCGAACGATGTCGCA AATGCTGTCGGTCCCTATGCAACCATCTATGCTATATGGAGAACTGGTGCCCTTGAAGGCGCTAAGACCGAAGTC CCCATCTGGATCCTTGTATTTGGTGGTGCCGCTATCTCCATTGGTATCTGGACATACGGTTATCACATCATGCGC AACTTGGGTAACCGTCTTACCCTGCACTCTCCCTCTCGTGGGTTCGCTATGGAGCTCGGTGCTGCCATTGCTGTC ATTATTGCCACCAGGCTGAAGCTCCCCGTCTCTACCACCCAGTGTATTACGGGCGCTACCGTCGGTGTTGGGCTT TGCAACGGCACTTGGCGAACGATCAACTGGCGGATGGTTGCCTGGATCTACATGGGTTGGATCATCACGCTTCCC TGCGCCGGTATCATCGCCGGTTGTTTGACCGGAATTATCGTGAACGCGCCTCGTTGGGGTATGTCCGGCGTCTGA |
| Transcript | >Pro_DTO377G3_2|g9454.t1 ATGGTTCTTCAGCAGTATGATTACATCTTCGCCATTGGCACGATATTCGCGTTCCTCGATGCATGGAACATCGGC GCCAATGATTGCGCCAACTCCTGGTCGACGTCTGTTTCGTCGCGTTCGCTAAAGCACTGGCAAGCCATGATCCTC GCATCTATCATGGAGTTTGCCGGAGCTGTCGGTGTAGGAAACAGTGTTTCTGATACTATCCGTACCAAGATCGTC AAGATCGATGCCTTCGCCGACAACGCCCCCCTCCTCATGCTTGGAATGTGCTGCGCTGTAGTTGCCTCCTCTCTA TATCTTACCTTCTGTACTAAGATCGGTCTTCCTGTTTCGACAACCCACTCCATTCTCGGTGGTATCCTTGGGATG GGTATCGCGCTTATCGGTGCTGATGATATTATCTGGTGGGGAGGTGATATCAACTCCGGTGTTGTCCAGGTGTTC CTTGCCTGGGTGATTGCACCCATCTTATCTGGTGTTGCCGGTGCGCTTATCTTTTTGATCACCAAGTATGGTATC CTACTGCGGAAGAATCCCGCACTCAGGGCGTTATACACCATTCCATTCTACTTCCTTCTGACGACTGGCCTCCTT ACTATGCTCATTGTCTGGAAGGGTGGCAGTAGCAGGATTAACCTCGAGGGGCGTGAGATAGCCGGAACTGTTATT GGTGTTGGTGTTGGCATGGCTCTTATCTCGGCCCTCTTCCTTTGCCCCTGGATCTACCGCAGGGTGATTATGGGT GACTGGCAGCTCAAGCCTTGGGACCTAATCTACGGCCCTCTTCTCTTCCGCCGTGGTGAAGTTCCTGCACCTCCC GACCGTGTTGAGACCGTCCGTAACTACTATCGCGGCCACAAGACCCTAGAGGAACTGGAAGCTGAGCGTTCCACT GATGTGGAAAAGAGCCACAACAGCAACAGCGAGCCTGGTTCCCCCGATCTCAAGGCAGAGCCCCAGGTCACTGCC AACTCGGATAACGGGACGCAAGCCGTGGATCCCGATGTCATTAACATTTGTGGTCCTCGTCCCGAAGGAGCATGG TATAGTGGTCCTGTCCTGTTCTGGCTGCTGAAGAAGGCCCTCCTAAACGGTGTCGAGCAAGACATTGTTAGCGCC CAGAAGAGCGATAGCAAACTCGCTGGCGATCTCGAGAAGACCCATGCCCATGCTGATCACTATGATAACGAAGCG GAGTACATGTTCTCTTTCCTCCAGATTCTGACAGCCTGTACCGCTTCTTTCACCCACGGTGCGAACGATGTCGCA AATGCTGTCGGTCCCTATGCAACCATCTATGCTATATGGAGAACTGGTGCCCTTGAAGGCGCTAAGACCGAAGTC CCCATCTGGATCCTTGTATTTGGTGGTGCCGCTATCTCCATTGGTATCTGGACATACGGTTATCACATCATGCGC AACTTGGGTAACCGTCTTACCCTGCACTCTCCCTCTCGTGGGTTCGCTATGGAGCTCGGTGCTGCCATTGCTGTC ATTATTGCCACCAGGCTGAAGCTCCCCGTCTCTACCACCCAGTGTATTACGGGCGCTACCGTCGGTGTTGGGCTT TGCAACGGCACTTGGCGAACGATCAACTGGCGGATGGTTGCCTGGATCTACATGGGTTGGATCATCACGCTTCCC TGCGCCGGTATCATCGCCGGTTGTTTGACCGGAATTATCGTGAACGCGCCTCGTTGGGGTATGTCCGGCGTCTGA |
| Gene | >Pro_DTO377G3_2|g9454.t1 ATGGTTCTTCAGCAGTATGATTACATCTTCGCCATTGGCACGATATTCGCGTTCCTCGATGCATGGAACATCGGC GCCAATGATTGCGCCAACTCCTGGTCGACGTCTGTTTCGTCGCGTTCGCTAAAGCACTGGCAAGCCATGATCCTC GCATCTATCATGGAGTTTGCCGGAGCGTAAGTTCATGACCTGCTTCCCACTTCCTGACTTTGTACTCACCTATAT TTCCAGTGTCGGTGTAGGAAACAGTGTTTCTGATACTATCCGTACCAAGATCGTCAAGATCGATGCCTTCGCCGA CAACGCCCCCCTCCTCATGCTTGGAATGTGCTGCGCTGTAGTTGCCTCCTCTCTATATCTTACCTTCTGTACTAA GATCGGTCTTCCTGTTTCGACAACCCACTCCATTCTCGGTGGTATCCTTGGGATGGGTATCGCGCTTATCGGTGC TGATGATATTATCTGGTGGGGAGGTGATATCAACTCCGGTGTTGTCCAGGTGTTCCTTGCCTGGGTGATTGCACC CATCTTATCTGGTGTTGCCGGTGCGCTTATCTTTTTGATCACCAAGTATGGTATCCTACTGCGGAAGAATCCCGC ACTCAGGGCGTTATACACCATTCCATTCTACTTCCTTCTGACGACTGGCCTCCTTACTAGTATGTTTCGTCAAAT TTCTGATCTCTGTGTATCGGCTACTGATAAAACACAGTGCTCATTGTCTGGAAGGGTGGCAGTAGCAGGATTAAC CTCGAGGGGCGTGAGATAGCCGGAACTGTTATTGGTGTTGGTGTTGGCATGGCTCTTATCTCGGCCCTCTTCCTT TGCCCCTGGATCTACCGCAGGGTGATTATGGGTGACTGGCAGCTCAAGCCTTGGGACCTAATCTACGGCCCTCTT CTCTTCCGCCGTGGTGAAGTTCCTGCACCTCCCGACCGTGTTGAGACCGTCCGTAACTACTATCGCGGCCACAAG ACCCTAGAGGAACTGGAAGCTGAGCGTTCCACTGATGTGGAAAAGAGCCACAACAGCAACAGCGAGCCTGGTTCC CCCGATCTCAAGGCAGAGCCCCAGGTCACTGCCAACTCGGATAACGGGACGCAAGCCGTGGATCCCGATGTCATT AACATTTGTGGTCCTCGTCCCGAAGGAGCATGGTATAGTGGTCCTGTCCTGTTCTGGCTGCTGAAGAAGGCCCTC CTAAACGGTGTCGAGCAAGACATTGTTAGCGCCCAGAAGAGCGATAGCAAACTCGCTGGCGATCTCGAGAAGACC CATGCCCATGCTGATCACTATGATAACGAAGCGGAGTACATGTTCTCTTTCCTCCAGATTCTGACAGCCTGTACC GCTTCTTTCACCCACGGTGCGAACGATGTCGCAAAGTTGGTTTTCCCATTTCATACCTACTATCAACTCATATAC TAACTGTTCCCAGTGCTGTCGGTCCCTATGCAACCATCTATGCTATATGGAGAACTGGTGCCCTTGAAGGCGCTA AGACCGAAGTCCCCATCTGGATCCTGTAAGTTTTATTCCATCAATGTAAGGACGCCCGTGTTAACTCACATTCTC CAGTGTATTTGGTGGTGCCGCTATCTCCATTGGTATCTGGACATACGGTTATCACATCATGCGCAACTTGGGTAA CCGTCTTACCCTGCACTCTCCCTCTCGTGGGTTCGCTATGGAGCTCGGTGCTGCCATTGCTGTCATTATTGCCAC CAGGCTGAGTATGTCCCTTTTATCTATTCCCAAATCATCACCACGCTAACATGACACTTGCAGAGCTCCCCGTCT CTACCACCCAGTGTATTACGGGCGCTACCGTCGGTGTTGGGCTTTGCAACGGCACTTGGCGAACGATCAACTGGC GGATGGTTGCCTGGATCTACATGGGTTGGATCATCACGCTTCCCTGCGCCGGTATCATCGCCGGTTGTTTGACCG GAATTATCGTGAACGCGCCTCGTTGGGGTATGTCCGGCGTCTGA |