© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9449.t1 |
| Gene name | |
| Location | scaffold_48:34930..37393 |
| Strand | - |
| Gene length (bp) | 2463 |
| Transcript length (bp) | 2343 |
| Coding sequence length (bp) | 2343 |
| Protein length (aa) | 781 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 1.3E-08 | 340 | 404 |
| PF13639 | zf-RING_2 | Ring finger domain | 2.4E-08 | 377 | 404 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.7E-06 | 342 | 403 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 22 | 17 |
| 2 | 38 | 60 | 22 |
| 3 | 99 | 121 | 22 |
| 4 | 142 | 164 | 22 |
| 5 | 174 | 196 | 22 |
| 6 | 276 | 298 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 49.39 | 30.28 | 68.49 |
| 5d_25C | Five days - 25 degrees Celsius | 50.28 | 30.86 | 69.71 |
| 7d_25C | Seven days - 25 degrees Celsius | 44.87 | 27.25 | 62.49 |
| 10d_25C | Ten days - 25 degrees Celsius | 53.88 | 33.14 | 74.61 |
| 7d_15C | Seven days - 15 degrees Celsius | 54.37 | 33.42 | 75.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 61.27 | 37.29 | 85.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.959555 | no |
| 3d_25C | 7d_25C | 0.741588 | no |
| 3d_25C | 7d_15C | 0.738878 | no |
| 3d_25C | 7d_30C | 0.363633 | no |
| 3d_25C | 10d_25C | 0.761966 | no |
| 5d_25C | 7d_25C | 0.683417 | no |
| 5d_25C | 7d_15C | 0.793476 | no |
| 5d_25C | 7d_30C | 0.414522 | no |
| 5d_25C | 10d_25C | 0.817681 | no |
| 7d_25C | 7d_15C | 0.440597 | no |
| 7d_25C | 7d_30C | 0.158622 | no |
| 7d_25C | 10d_25C | 0.466411 | no |
| 7d_15C | 7d_30C | 0.655703 | no |
| 7d_15C | 10d_25C | 0.979446 | no |
| 7d_30C | 10d_25C | 0.631856 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9449.t1 MRLAAYAGASVVLAAGVFLKALHQRSNFYSACVYLSQSSANLMILTNLCLLVTGFILFWLQRLLYGRLRPIETEQ LYERAWFAVTETCLAMTIFRGELGGWFLVMFISLLVGKVWGWIGEGRVEFLEQQPPANPRLFHTRLALSLVLTVS FNFFMLRYCVHTVITQARPDMMVMFGFEFAILLILSTSTLLRYVIALTEISITRQQIKAKIQERRDEIRVARVEA IREHARAGATSPPDNLPDENDVNELEIDVPGWEEKGRWVFYLDLLTDLLKLLIYLSFFGILLTFYGLPIHILRDV VVTIRSFARRIMDFMRYRNATRDMHQRYPDATAEEISREDVCIICREEMIPVRPAQPGADAAGEPAPQRVPDRLR PKKLPCGHILHFSCLRSWLERQQNCPTCRRPVIMPQRTQGAAGVADNNARGGQNGGIRPGQQGADAQPRARVYQF GPFRIGFGAVRGDLFNNLHQGNAPRANPPANAPGGQIGFGFGFGRRPQAPTPAPQAAAGGSIAAEINDQLLHIEH RLNQEIATLRAATEHLNHVRQLRGELERLLAQARAVNRPAAGQPGAGQPAPPPNIAPASSLFTTSHQYGANPGTD VLNPGDPRLPEGLTLPPGWTLLPLQRMDNSAGGVEQTVQPTPTTTVTSPAAPAVASAVTSQVSPFPVPAQDQTSG SVGINAHGTVNAETHPVNGAPSPPVLQPTPTVPSVEHRAESPSQEWTDVAPRGSFDARPASIPTTWGTNEESASS ASAQAETQPESTSHGKRRTASVEETPDEEA* |
| Coding | >Pro_DTO377G3_2|g9449.t1 ATGAGACTGGCCGCTTATGCTGGGGCCTCAGTGGTCCTAGCCGCTGGTGTGTTTCTAAAAGCTCTCCATCAGAGG TCCAATTTCTATTCGGCATGCGTCTATCTCTCTCAGAGTAGTGCGAATCTTATGATCCTCACGAATTTATGCCTT CTCGTCACCGGCTTTATCTTATTCTGGCTCCAGCGACTTCTCTACGGACGCTTGCGACCAATCGAGACCGAACAA CTATACGAGCGGGCCTGGTTCGCCGTCACAGAGACATGTCTGGCTATGACCATCTTCCGAGGCGAACTTGGAGGC TGGTTTCTGGTCATGTTCATTTCGCTGCTGGTCGGTAAGGTCTGGGGATGGATTGGCGAAGGCCGCGTTGAGTTC CTAGAGCAACAGCCGCCGGCTAATCCCCGGTTGTTCCATACTCGACTGGCGCTATCTCTCGTGCTGACGGTGTCG TTCAACTTCTTTATGTTACGGTACTGTGTGCACACTGTAATCACGCAGGCACGGCCGGATATGATGGTGATGTTT GGATTCGAATTCGCCATCTTGCTAATCCTCTCGACCTCCACCCTCCTGCGATACGTTATCGCGTTAACCGAAATA TCCATAACCCGCCAGCAAATAAAGGCCAAGATCCAGGAACGTAGGGATGAGATCCGTGTTGCGCGAGTCGAAGCA ATTCGAGAACATGCCCGCGCGGGAGCTACCTCCCCTCCTGACAATCTGCCCGACGAAAACGATGTCAATGAGTTG GAGATCGACGTGCCCGGGTGGGAGGAGAAGGGTCGTTGGGTCTTCTACTTGGATCTTTTGACCGATTTGTTGAAA CTCCTGATTTATTTGAGCTTCTTTGGCATTCTGCTCACTTTCTACGGCCTCCCCATCCACATTCTGCGGGACGTT GTTGTGACCATCCGCTCATTTGCGCGTCGAATTATGGACTTCATGCGTTACAGAAACGCGACAAGGGATATGCAT CAGAGGTATCCGGATGCAACAGCGGAGGAAATCTCCCGGGAAGATGTCTGTATCATCTGCCGTGAAGAGATGATT CCGGTTCGGCCGGCGCAACCGGGGGCTGATGCGGCTGGAGAGCCTGCACCACAGCGTGTTCCTGACCGTCTACGC CCAAAGAAGCTCCCATGTGGCCATATCCTGCACTTTTCGTGTCTCCGAAGCTGGCTTGAGAGGCAACAAAATTGC CCGACATGCCGACGTCCTGTTATAATGCCACAGCGAACTCAGGGAGCTGCCGGGGTTGCAGACAACAACGCACGC GGAGGTCAGAATGGTGGTATTCGGCCAGGCCAACAAGGTGCGGATGCACAACCACGTGCTCGGGTCTATCAGTTT GGACCCTTCCGCATCGGCTTTGGAGCTGTGCGTGGAGATTTATTCAACAATCTTCACCAAGGTAATGCGCCGCGG GCAAACCCCCCTGCGAATGCCCCTGGAGGACAAATCGGGTTTGGATTTGGATTCGGGCGCCGTCCCCAAGCCCCC ACCCCCGCCCCACAAGCTGCGGCTGGGGGATCTATCGCTGCTGAAATCAATGATCAGTTGCTGCACATCGAGCAC CGGCTGAACCAAGAGATTGCCACCCTTCGAGCTGCTACAGAGCATCTAAATCACGTGCGCCAGCTTCGGGGGGAA CTAGAGCGGTTGCTTGCTCAAGCAAGGGCTGTTAACCGACCAGCTGCCGGTCAACCTGGTGCCGGCCAACCGGCT CCGCCTCCAAACATAGCCCCGGCATCTTCTTTATTCACAACGAGCCACCAGTATGGCGCAAACCCGGGCACTGAT GTTCTAAACCCTGGAGACCCTCGTCTACCGGAAGGGCTCACTCTTCCCCCTGGTTGGACCCTCCTTCCTCTCCAG CGTATGGATAATAGTGCCGGCGGTGTGGAACAAACAGTACAACCTACTCCTACCACTACAGTGACATCCCCGGCT GCTCCAGCCGTGGCTAGCGCTGTAACTTCTCAGGTCTCTCCATTCCCCGTTCCTGCTCAGGATCAAACGAGCGGG AGCGTCGGGATAAATGCGCACGGCACCGTCAATGCTGAAACCCATCCCGTAAATGGGGCCCCTAGTCCACCGGTA CTGCAACCAACACCCACTGTCCCCTCAGTGGAACATCGTGCAGAATCCCCGTCTCAGGAATGGACCGACGTTGCT CCTAGAGGGTCCTTTGACGCCAGGCCAGCTTCTATTCCTACTACATGGGGTACCAATGAGGAATCTGCAAGTAGT GCTTCTGCTCAAGCCGAGACTCAACCCGAGTCCACATCCCACGGCAAGCGCCGGACCGCATCAGTTGAGGAAACT CCTGATGAAGAAGCTTGA |
| Transcript | >Pro_DTO377G3_2|g9449.t1 ATGAGACTGGCCGCTTATGCTGGGGCCTCAGTGGTCCTAGCCGCTGGTGTGTTTCTAAAAGCTCTCCATCAGAGG TCCAATTTCTATTCGGCATGCGTCTATCTCTCTCAGAGTAGTGCGAATCTTATGATCCTCACGAATTTATGCCTT CTCGTCACCGGCTTTATCTTATTCTGGCTCCAGCGACTTCTCTACGGACGCTTGCGACCAATCGAGACCGAACAA CTATACGAGCGGGCCTGGTTCGCCGTCACAGAGACATGTCTGGCTATGACCATCTTCCGAGGCGAACTTGGAGGC TGGTTTCTGGTCATGTTCATTTCGCTGCTGGTCGGTAAGGTCTGGGGATGGATTGGCGAAGGCCGCGTTGAGTTC CTAGAGCAACAGCCGCCGGCTAATCCCCGGTTGTTCCATACTCGACTGGCGCTATCTCTCGTGCTGACGGTGTCG TTCAACTTCTTTATGTTACGGTACTGTGTGCACACTGTAATCACGCAGGCACGGCCGGATATGATGGTGATGTTT GGATTCGAATTCGCCATCTTGCTAATCCTCTCGACCTCCACCCTCCTGCGATACGTTATCGCGTTAACCGAAATA TCCATAACCCGCCAGCAAATAAAGGCCAAGATCCAGGAACGTAGGGATGAGATCCGTGTTGCGCGAGTCGAAGCA ATTCGAGAACATGCCCGCGCGGGAGCTACCTCCCCTCCTGACAATCTGCCCGACGAAAACGATGTCAATGAGTTG GAGATCGACGTGCCCGGGTGGGAGGAGAAGGGTCGTTGGGTCTTCTACTTGGATCTTTTGACCGATTTGTTGAAA CTCCTGATTTATTTGAGCTTCTTTGGCATTCTGCTCACTTTCTACGGCCTCCCCATCCACATTCTGCGGGACGTT GTTGTGACCATCCGCTCATTTGCGCGTCGAATTATGGACTTCATGCGTTACAGAAACGCGACAAGGGATATGCAT CAGAGGTATCCGGATGCAACAGCGGAGGAAATCTCCCGGGAAGATGTCTGTATCATCTGCCGTGAAGAGATGATT CCGGTTCGGCCGGCGCAACCGGGGGCTGATGCGGCTGGAGAGCCTGCACCACAGCGTGTTCCTGACCGTCTACGC CCAAAGAAGCTCCCATGTGGCCATATCCTGCACTTTTCGTGTCTCCGAAGCTGGCTTGAGAGGCAACAAAATTGC CCGACATGCCGACGTCCTGTTATAATGCCACAGCGAACTCAGGGAGCTGCCGGGGTTGCAGACAACAACGCACGC GGAGGTCAGAATGGTGGTATTCGGCCAGGCCAACAAGGTGCGGATGCACAACCACGTGCTCGGGTCTATCAGTTT GGACCCTTCCGCATCGGCTTTGGAGCTGTGCGTGGAGATTTATTCAACAATCTTCACCAAGGTAATGCGCCGCGG GCAAACCCCCCTGCGAATGCCCCTGGAGGACAAATCGGGTTTGGATTTGGATTCGGGCGCCGTCCCCAAGCCCCC ACCCCCGCCCCACAAGCTGCGGCTGGGGGATCTATCGCTGCTGAAATCAATGATCAGTTGCTGCACATCGAGCAC CGGCTGAACCAAGAGATTGCCACCCTTCGAGCTGCTACAGAGCATCTAAATCACGTGCGCCAGCTTCGGGGGGAA CTAGAGCGGTTGCTTGCTCAAGCAAGGGCTGTTAACCGACCAGCTGCCGGTCAACCTGGTGCCGGCCAACCGGCT CCGCCTCCAAACATAGCCCCGGCATCTTCTTTATTCACAACGAGCCACCAGTATGGCGCAAACCCGGGCACTGAT GTTCTAAACCCTGGAGACCCTCGTCTACCGGAAGGGCTCACTCTTCCCCCTGGTTGGACCCTCCTTCCTCTCCAG CGTATGGATAATAGTGCCGGCGGTGTGGAACAAACAGTACAACCTACTCCTACCACTACAGTGACATCCCCGGCT GCTCCAGCCGTGGCTAGCGCTGTAACTTCTCAGGTCTCTCCATTCCCCGTTCCTGCTCAGGATCAAACGAGCGGG AGCGTCGGGATAAATGCGCACGGCACCGTCAATGCTGAAACCCATCCCGTAAATGGGGCCCCTAGTCCACCGGTA CTGCAACCAACACCCACTGTCCCCTCAGTGGAACATCGTGCAGAATCCCCGTCTCAGGAATGGACCGACGTTGCT CCTAGAGGGTCCTTTGACGCCAGGCCAGCTTCTATTCCTACTACATGGGGTACCAATGAGGAATCTGCAAGTAGT GCTTCTGCTCAAGCCGAGACTCAACCCGAGTCCACATCCCACGGCAAGCGCCGGACCGCATCAGTTGAGGAAACT CCTGATGAAGAAGCTTGA |
| Gene | >Pro_DTO377G3_2|g9449.t1 ATGAGACTGGCCGCTTATGCTGGGGTAAGTACTGCAGCTGATGGGGAAGATAACCCGCTAACATTGGAACCCGTT CACAGGCCTCAGTGGTCCTAGCCGCTGGTGTGTTTCTAAAAGCTCTCCATCAGAGGTCCAATTTCTATTCGGCAT GCGTCTATCTCTCTCAGAGTAGTGCGAATCTTATGGTGAGTTGTCCAGTTTGGGTTATCGCGCTTGGCCATAGTC CCTAACCCATTACCACATCTCCAGATCCTCACGAATTTATGCCTTCTCGTCACCGGCTTTATCTTATTCTGGCTC CAGCGACTTCTCTACGGACGCTTGCGACCAATCGAGACCGAACAACTATACGAGCGGGCCTGGTTCGCCGTCACA GAGACATGTCTGGCTATGACCATCTTCCGAGGCGAACTTGGAGGCTGGTTTCTGGTCATGTTCATTTCGCTGCTG GTCGGTAAGGTCTGGGGATGGATTGGCGAAGGCCGCGTTGAGTTCCTAGAGCAACAGCCGCCGGCTAATCCCCGG TTGTTCCATACTCGACTGGCGCTATCTCTCGTGCTGACGGTGTCGTTCAACTTCTTTATGTTACGGTACTGTGTG CACACTGTAATCACGCAGGCACGGCCGGATATGATGGTGATGTTTGGATTCGAATTCGCCATCTTGCTAATCCTC TCGACCTCCACCCTCCTGCGATACGTTATCGCGTTAACCGAAATATCCATAACCCGCCAGCAAATAAAGGCCAAG ATCCAGGAACGTAGGGATGAGATCCGTGTTGCGCGAGTCGAAGCAATTCGAGAACATGCCCGCGCGGGAGCTACC TCCCCTCCTGACAATCTGCCCGACGAAAACGATGTCAATGAGTTGGAGATCGACGTGCCCGGGTGGGAGGAGAAG GGTCGTTGGGTCTTCTACTTGGATCTTTTGACCGATTTGTTGAAACTCCTGATTTATTTGAGCTTCTTTGGCATT CTGCTCACTTTCTACGGCCTCCCCATCCACATTCTGCGGGACGTTGTTGTGACCATCCGCTCATTTGCGCGTCGA ATTATGGACTTCATGCGTTACAGAAACGCGACAAGGGATATGCATCAGAGGTATCCGGATGCAACAGCGGAGGAA ATCTCCCGGGAAGATGTCTGTATCATCTGCCGTGAAGAGATGATTCCGGTTCGGCCGGCGCAACCGGGGGCTGAT GCGGCTGGAGAGCCTGCACCACAGCGTGTTCCTGACCGTCTACGCCCAAAGAAGCTCCCATGTGGCCATATCCTG CACTTTTCGTGTCTCCGAAGCTGGCTTGAGAGGCAACAAAATTGCCCGACATGCCGACGTCCTGTTATAATGCCA CAGCGAACTCAGGGAGCTGCCGGGGTTGCAGACAACAACGCACGCGGAGGTCAGAATGGTGGTATTCGGCCAGGC CAACAAGGTGCGGATGCACAACCACGTGCTCGGGTCTATCAGTTTGGACCCTTCCGCATCGGCTTTGGAGCTGTG CGTGGAGATTTATTCAACAATCTTCACCAAGGTAATGCGCCGCGGGCAAACCCCCCTGCGAATGCCCCTGGAGGA CAAATCGGGTTTGGATTTGGATTCGGGCGCCGTCCCCAAGCCCCCACCCCCGCCCCACAAGCTGCGGCTGGGGGA TCTATCGCTGCTGAAATCAATGATCAGTTGCTGCACATCGAGCACCGGCTGAACCAAGAGATTGCCACCCTTCGA GCTGCTACAGAGCATCTAAATCACGTGCGCCAGCTTCGGGGGGAACTAGAGCGGTTGCTTGCTCAAGCAAGGGCT GTTAACCGACCAGCTGCCGGTCAACCTGGTGCCGGCCAACCGGCTCCGCCTCCAAACATAGCCCCGGCATCTTCT TTATTCACAACGAGCCACCAGTATGGCGCAAACCCGGGCACTGATGTTCTAAACCCTGGAGACCCTCGTCTACCG GAAGGGCTCACTCTTCCCCCTGGTTGGACCCTCCTTCCTCTCCAGCGTATGGATAATAGTGCCGGCGGTGTGGAA CAAACAGTACAACCTACTCCTACCACTACAGTGACATCCCCGGCTGCTCCAGCCGTGGCTAGCGCTGTAACTTCT CAGGTCTCTCCATTCCCCGTTCCTGCTCAGGATCAAACGAGCGGGAGCGTCGGGATAAATGCGCACGGCACCGTC AATGCTGAAACCCATCCCGTAAATGGGGCCCCTAGTCCACCGGTACTGCAACCAACACCCACTGTCCCCTCAGTG GAACATCGTGCAGAATCCCCGTCTCAGGAATGGACCGACGTTGCTCCTAGAGGGTCCTTTGACGCCAGGCCAGCT TCTATTCCTACTACATGGGGTACCAATGAGGAATCTGCAAGTAGTGCTTCTGCTCAAGCCGAGACTCAACCCGAG TCCACATCCCACGGCAAGCGCCGGACCGCATCAGTTGAGGAAACTCCTGATGAAGAAGCTTGA |