© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9446.t1 |
| Gene name | |
| Location | scaffold_48:27586..28606 |
| Strand | + |
| Gene length (bp) | 1020 |
| Transcript length (bp) | 651 |
| Coding sequence length (bp) | 651 |
| Protein length (aa) | 217 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02466 | Tim17 | Tim17/Tim22/Tim23/Pmp24 family | 1.2E-13 | 20 | 130 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 88.10 | 48.62 | 127.58 |
| 5d_25C | Five days - 25 degrees Celsius | 102.40 | 58.45 | 146.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 96.32 | 54.59 | 138.05 |
| 10d_25C | Ten days - 25 degrees Celsius | 126.22 | 74.18 | 178.27 |
| 7d_15C | Seven days - 15 degrees Celsius | 96.87 | 55.11 | 138.64 |
| 7d_30C | Seven days - 30 degrees Celsius | 81.87 | 44.89 | 118.86 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.621759 | no |
| 3d_25C | 7d_25C | 0.792101 | no |
| 3d_25C | 7d_15C | 0.775981 | no |
| 3d_25C | 7d_30C | 0.839521 | no |
| 3d_25C | 10d_25C | 0.139968 | no |
| 5d_25C | 7d_25C | 0.859952 | no |
| 5d_25C | 7d_15C | 0.874127 | no |
| 5d_25C | 7d_30C | 0.423706 | no |
| 5d_25C | 10d_25C | 0.438054 | no |
| 7d_25C | 7d_15C | 0.988914 | no |
| 7d_25C | 7d_30C | 0.581098 | no |
| 7d_25C | 10d_25C | 0.274948 | no |
| 7d_15C | 7d_30C | 0.567755 | no |
| 7d_15C | 10d_25C | 0.296237 | no |
| 7d_30C | 10d_25C | 0.067273 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9446.t1 MDVLLSQLNALVLKPELAPLLSLVKGARNGIVYGSKVRFPHALVMIFLFRSGTIREKTKLVLKATRLHARNLATF ALIYKASMIVLRNIPAGAGKEGRYDSFFAGLLGGYAVFGRQPGSISKQIVIYVFARVMLALAKLSVQPKMHPLSS LITSDARSQIMNNAYPVFAGMTWAMVMYIFRWHPETLASSLRSSMVYIYGDSDHWDSLRTLLLHNK* |
| Coding | >Pro_DTO377G3_2|g9446.t1 ATGGATGTATTGCTCTCCCAACTGAACGCGCTCGTTCTAAAGCCCGAACTCGCACCGCTACTGTCATTAGTGAAG GGTGCACGCAATGGAATCGTCTACGGATCGAAAGTTCGCTTTCCGCATGCGCTGGTAATGATATTTCTGTTCAGA TCTGGAACGATACGTGAAAAGACGAAGCTTGTTTTGAAAGCAACCCGCCTGCATGCGCGTAACCTGGCCACATTT GCCCTCATATACAAGGCATCCATGATCGTGCTCCGGAATATACCAGCTGGCGCCGGGAAAGAAGGCCGATATGAT AGCTTCTTCGCAGGCCTGCTGGGCGGGTATGCGGTTTTTGGACGACAGCCGGGCAGTATTAGCAAGCAGATTGTT ATTTATGTCTTCGCGCGTGTGATGCTTGCTCTCGCTAAACTCTCCGTCCAACCAAAAATGCACCCTCTTTCCTCC CTCATCACGTCCGATGCTCGCAGTCAGATCATGAATAATGCTTACCCCGTTTTCGCCGGTATGACCTGGGCGATG GTCATGTACATTTTCCGGTGGCACCCGGAGACGCTGGCGTCGAGCCTGCGGAGTAGCATGGTGTATATTTACGGC GACTCAGACCATTGGGATTCCCTCCGCACTCTGCTTCTACACAACAAATGA |
| Transcript | >Pro_DTO377G3_2|g9446.t1 ATGGATGTATTGCTCTCCCAACTGAACGCGCTCGTTCTAAAGCCCGAACTCGCACCGCTACTGTCATTAGTGAAG GGTGCACGCAATGGAATCGTCTACGGATCGAAAGTTCGCTTTCCGCATGCGCTGGTAATGATATTTCTGTTCAGA TCTGGAACGATACGTGAAAAGACGAAGCTTGTTTTGAAAGCAACCCGCCTGCATGCGCGTAACCTGGCCACATTT GCCCTCATATACAAGGCATCCATGATCGTGCTCCGGAATATACCAGCTGGCGCCGGGAAAGAAGGCCGATATGAT AGCTTCTTCGCAGGCCTGCTGGGCGGGTATGCGGTTTTTGGACGACAGCCGGGCAGTATTAGCAAGCAGATTGTT ATTTATGTCTTCGCGCGTGTGATGCTTGCTCTCGCTAAACTCTCCGTCCAACCAAAAATGCACCCTCTTTCCTCC CTCATCACGTCCGATGCTCGCAGTCAGATCATGAATAATGCTTACCCCGTTTTCGCCGGTATGACCTGGGCGATG GTCATGTACATTTTCCGGTGGCACCCGGAGACGCTGGCGTCGAGCCTGCGGAGTAGCATGGTGTATATTTACGGC GACTCAGACCATTGGGATTCCCTCCGCACTCTGCTTCTACACAACAAATGA |
| Gene | >Pro_DTO377G3_2|g9446.t1 ATGGATGTATTGCTCGTGAGTTCCGGAGCGTATCCGACTATACACAGCAGTATTGACATTCTCCTCCGCAGTCCC AACTGAACGCGCTCGTTCTAAAGCCCGAACTCGCACCGCTACTGTCATTAGTGAAGGGTGCACGCAATGGAATCG TCTACGGATCGAAAGTTCGCTTTCCGCATGCGCTGGTGTATGTTAGACCTTGGACAGCCGAAAACCCCGGTATAT GGCATAGCTGACTGACTGCGACTGCTTCTAGAATGATATTTCTGTTCAGATCTGGAACGTACGTCCCCACGCGCG ACCTCACCCCCCAGAACGAAACTGATAGCTTTGTTATTCAGGATACGTGAAAAGACGAAGCTTGTTTTGAAAGCA ACCCGCCTGCATGCGCGTAACCTGGCCACATTTGCCCTCATATACAAGGCATCCATGATCGTGCTCCGGAATATA CCAGCTGGCGCCGGGAAAGAAGGCCGATATGATAGCTTCTTCGCAGGCCTGCTGGGCGGGTATGCGGTTTTTGGA CGACAGCCGGGCAGTATTAGCAAGCAGGTATGTAATTTGGACATGCGCCTGATTGTGGGAACTATTCAAACCTCG ACTCCCGAATACACTCCTTCTCTGCAGAGCTAACTCGAATCTAGATTGTTATTTATGTCTTCGCGCGTGTGATGC TTGCTCTCGCTAAACTCTCCGTCCAACCAAAAATGCACCCTCTTTCCTCCCTCATCACGTCCGATGCTCGCAGTC AGATCATGAATAATGCTTACCCCGTTTTCGCCGGTATGACCTGGGCGATGGTCATGTACATTTTCCGGTGGCACC CGGAGACGCTGGCGTCGAGCCTGCGGAGTAGCATGGTGTATATGTATGTTTACCCTCCACTATATATGATTAGCC TCAGTTTGAGTACTTTGAAAGTTCGAGTTATTTTCCAATGCTAACATTCATGTCAACAACAGTTACGGCGACTCA GACCATTGGGATTCCCTCCGCACTCTGCTTCTACACAACAAATGA |