© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9444.t1 |
| Gene name | |
| Location | scaffold_48:23081..24447 |
| Strand | - |
| Gene length (bp) | 1366 |
| Transcript length (bp) | 1308 |
| Coding sequence length (bp) | 1308 |
| Protein length (aa) | 436 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 213 | 235 | 22 |
| 2 | 239 | 258 | 19 |
| 3 | 330 | 352 | 22 |
| 4 | 356 | 378 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 21.11 | 10.36 | 31.86 |
| 5d_25C | Five days - 25 degrees Celsius | 17.09 | 7.86 | 26.32 |
| 7d_25C | Seven days - 25 degrees Celsius | 18.16 | 8.48 | 27.85 |
| 10d_25C | Ten days - 25 degrees Celsius | 9.24 | 3.37 | 15.12 |
| 7d_15C | Seven days - 15 degrees Celsius | 19.96 | 8.96 | 30.96 |
| 7d_30C | Seven days - 30 degrees Celsius | 24.00 | 11.93 | 36.07 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.532910 | no |
| 3d_25C | 7d_25C | 0.681025 | no |
| 3d_25C | 7d_15C | 0.900976 | no |
| 3d_25C | 7d_30C | 0.723487 | no |
| 3d_25C | 10d_25C | 0.007779 | yes |
| 5d_25C | 7d_25C | 0.892021 | no |
| 5d_25C | 7d_15C | 0.694857 | no |
| 5d_25C | 7d_30C | 0.282046 | no |
| 5d_25C | 10d_25C | 0.056880 | no |
| 7d_25C | 7d_15C | 0.828550 | no |
| 7d_25C | 7d_30C | 0.394764 | no |
| 7d_25C | 10d_25C | 0.033923 | yes |
| 7d_15C | 7d_30C | 0.612062 | no |
| 7d_15C | 10d_25C | 0.013810 | yes |
| 7d_30C | 10d_25C | 0.003197 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9444.t1 MSSDLSIAMTEIISLGDMSDQGGVLGAFGAVLGYIGAEAATEIWFSSLLWPQRSFSHVTLRSIPTLALLMPMGGP LHKAALSTFDIANARGLLKGAHEGHMLGTSFFEQTDWTYTICGTATSEPRAARNCMWARALHYMPIPAEKPGSLA GLSPPATDAAIEKGILPPTDNGRIPLRAKVAVYHLIFTPATAEDKASQMAFVRENCGRPGWHVYLSILIAELSGI ILFAVVYAIGRSLWCLIWLAPLLLRLLSAFFALDHESLTPVSSSTSSPSTTPTTEAEPPRDFVLQFPQSQGGDLM LFTGLPALVQQFFRHYGHPVRNRPREILQLSIIALFAALFPLGLLASTLWMPPLVQYAWTCYQIYIVLTMHIVRY TSFGRNTSTESKIADYLADRPAILFGEKRHGAETVKVSLIATYHARHQEGRDCLERLVSR* |
| Coding | >Pro_DTO377G3_2|g9444.t1 ATGTCATCAGATCTGTCCATTGCCATGACAGAAATCATCTCGCTTGGCGATATGTCCGACCAAGGTGGGGTTCTT GGCGCTTTTGGTGCGGTGCTTGGTTATATCGGAGCAGAGGCAGCCACCGAAATCTGGTTTTCGTCCTTATTATGG CCCCAGCGATCATTCTCCCACGTCACACTTCGATCCATCCCAACCCTGGCTCTTCTGATGCCCATGGGGGGTCCT TTGCACAAAGCCGCTCTGAGCACCTTCGATATCGCCAACGCCCGAGGTCTCTTGAAGGGCGCCCACGAAGGCCAC ATGCTGGGCACTTCATTCTTTGAGCAAACAGACTGGACCTACACCATTTGCGGTACAGCTACTTCCGAGCCCCGC GCAGCTCGTAACTGCATGTGGGCGCGAGCTCTTCATTACATGCCTATACCCGCCGAAAAACCTGGATCACTGGCA GGACTATCCCCTCCAGCCACGGACGCTGCCATCGAGAAGGGTATCCTCCCGCCCACCGACAATGGCCGCATCCCC TTACGAGCGAAAGTCGCCGTCTACCACCTCATCTTCACTCCAGCAACGGCAGAAGATAAAGCCTCGCAGATGGCT TTTGTGCGCGAGAACTGCGGCCGACCAGGCTGGCACGTTTACCTCAGCATCTTAATCGCCGAGCTCTCCGGCATC ATCCTCTTTGCCGTCGTCTACGCCATCGGCCGATCACTCTGGTGTCTCATTTGGCTAGCCCCGCTGCTGCTCCGC CTCCTGAGCGCCTTTTTCGCCCTCGACCACGAGTCCCTCACCCCTGTCTCATCCTCCACCTCATCGCCATCAACC ACGCCGACCACCGAAGCTGAACCACCTCGTGATTTCGTCCTGCAGTTCCCCCAATCTCAGGGCGGCGACCTCATG CTGTTCACAGGTCTCCCAGCCCTCGTGCAGCAGTTCTTCCGACACTACGGCCACCCAGTCCGGAACCGACCCCGG GAGATTCTCCAGCTGAGCATTATAGCGCTTTTCGCTGCTCTATTTCCGCTAGGATTGCTGGCCTCGACTCTCTGG ATGCCGCCGCTGGTTCAGTACGCGTGGACCTGTTACCAGATATACATTGTCCTAACGATGCATATCGTCCGCTAC ACGTCGTTTGGACGGAACACGAGCACGGAATCTAAGATCGCTGATTATCTGGCGGATCGGCCGGCGATTCTTTTT GGGGAGAAGAGACATGGGGCTGAGACGGTGAAAGTTAGTCTTATTGCGACATATCACGCGCGGCATCAGGAGGGG AGGGATTGTTTGGAGCGCTTGGTGAGCCGGTAG |
| Transcript | >Pro_DTO377G3_2|g9444.t1 ATGTCATCAGATCTGTCCATTGCCATGACAGAAATCATCTCGCTTGGCGATATGTCCGACCAAGGTGGGGTTCTT GGCGCTTTTGGTGCGGTGCTTGGTTATATCGGAGCAGAGGCAGCCACCGAAATCTGGTTTTCGTCCTTATTATGG CCCCAGCGATCATTCTCCCACGTCACACTTCGATCCATCCCAACCCTGGCTCTTCTGATGCCCATGGGGGGTCCT TTGCACAAAGCCGCTCTGAGCACCTTCGATATCGCCAACGCCCGAGGTCTCTTGAAGGGCGCCCACGAAGGCCAC ATGCTGGGCACTTCATTCTTTGAGCAAACAGACTGGACCTACACCATTTGCGGTACAGCTACTTCCGAGCCCCGC GCAGCTCGTAACTGCATGTGGGCGCGAGCTCTTCATTACATGCCTATACCCGCCGAAAAACCTGGATCACTGGCA GGACTATCCCCTCCAGCCACGGACGCTGCCATCGAGAAGGGTATCCTCCCGCCCACCGACAATGGCCGCATCCCC TTACGAGCGAAAGTCGCCGTCTACCACCTCATCTTCACTCCAGCAACGGCAGAAGATAAAGCCTCGCAGATGGCT TTTGTGCGCGAGAACTGCGGCCGACCAGGCTGGCACGTTTACCTCAGCATCTTAATCGCCGAGCTCTCCGGCATC ATCCTCTTTGCCGTCGTCTACGCCATCGGCCGATCACTCTGGTGTCTCATTTGGCTAGCCCCGCTGCTGCTCCGC CTCCTGAGCGCCTTTTTCGCCCTCGACCACGAGTCCCTCACCCCTGTCTCATCCTCCACCTCATCGCCATCAACC ACGCCGACCACCGAAGCTGAACCACCTCGTGATTTCGTCCTGCAGTTCCCCCAATCTCAGGGCGGCGACCTCATG CTGTTCACAGGTCTCCCAGCCCTCGTGCAGCAGTTCTTCCGACACTACGGCCACCCAGTCCGGAACCGACCCCGG GAGATTCTCCAGCTGAGCATTATAGCGCTTTTCGCTGCTCTATTTCCGCTAGGATTGCTGGCCTCGACTCTCTGG ATGCCGCCGCTGGTTCAGTACGCGTGGACCTGTTACCAGATATACATTGTCCTAACGATGCATATCGTCCGCTAC ACGTCGTTTGGACGGAACACGAGCACGGAATCTAAGATCGCTGATTATCTGGCGGATCGGCCGGCGATTCTTTTT GGGGAGAAGAGACATGGGGCTGAGACGGTGAAAGTTAGTCTTATTGCGACATATCACGCGCGGCATCAGGAGGGG AGGGATTGTTTGGAGCGCTTGGTGAGCCGGTAG |
| Gene | >Pro_DTO377G3_2|g9444.t1 ATGTCATCAGATCTGTCCATTGCCATGACAGGTCCGGCCATCTGGACAAAAGAAGTGAGTTCTATCTGACCACAA CCCTTTGCTACCAGAAATCATCTCGCTTGGCGATATGTCCGACCAAGGTGGGGTTCTTGGCGCTTTTGGTGCGGT GCTTGGTTATATCGGAGCAGAGGCAGCCACCGAAATCTGGTTTTCGTCCTTATTATGGCCCCAGCGATCATTCTC CCACGTCACACTTCGATCCATCCCAACCCTGGCTCTTCTGATGCCCATGGGGGGTCCTTTGCACAAAGCCGCTCT GAGCACCTTCGATATCGCCAACGCCCGAGGTCTCTTGAAGGGCGCCCACGAAGGCCACATGCTGGGCACTTCATT CTTTGAGCAAACAGACTGGACCTACACCATTTGCGGTACAGCTACTTCCGAGCCCCGCGCAGCTCGTAACTGCAT GTGGGCGCGAGCTCTTCATTACATGCCTATACCCGCCGAAAAACCTGGATCACTGGCAGGACTATCCCCTCCAGC CACGGACGCTGCCATCGAGAAGGGTATCCTCCCGCCCACCGACAATGGCCGCATCCCCTTACGAGCGAAAGTCGC CGTCTACCACCTCATCTTCACTCCAGCAACGGCAGAAGATAAAGCCTCGCAGATGGCTTTTGTGCGCGAGAACTG CGGCCGACCAGGCTGGCACGTTTACCTCAGCATCTTAATCGCCGAGCTCTCCGGCATCATCCTCTTTGCCGTCGT CTACGCCATCGGCCGATCACTCTGGTGTCTCATTTGGCTAGCCCCGCTGCTGCTCCGCCTCCTGAGCGCCTTTTT CGCCCTCGACCACGAGTCCCTCACCCCTGTCTCATCCTCCACCTCATCGCCATCAACCACGCCGACCACCGAAGC TGAACCACCTCGTGATTTCGTCCTGCAGTTCCCCCAATCTCAGGGCGGCGACCTCATGCTGTTCACAGGTCTCCC AGCCCTCGTGCAGCAGTTCTTCCGACACTACGGCCACCCAGTCCGGAACCGACCCCGGGAGATTCTCCAGCTGAG CATTATAGCGCTTTTCGCTGCTCTATTTCCGCTAGGATTGCTGGCCTCGACTCTCTGGATGCCGCCGCTGGTTCA GTACGCGTGGACCTGTTACCAGATATACATTGTCCTAACGATGCATATCGTCCGCTACACGTCGTTTGGACGGAA CACGAGCACGGAATCTAAGATCGCTGATTATCTGGCGGATCGGCCGGCGATTCTTTTTGGGGAGAAGAGACATGG GGCTGAGACGGTGAAAGTTAGTCTTATTGCGACATATCACGCGCGGCATCAGGAGGGGAGGGATTGTTTGGAGCG CTTGGTGAGCCGGTAG |