© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9413.t1 |
| Gene name | |
| Location | scaffold_47:76087..77467 |
| Strand | - |
| Gene length (bp) | 1380 |
| Transcript length (bp) | 1323 |
| Coding sequence length (bp) | 1323 |
| Protein length (aa) | 441 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00293 | NUDIX | NUDIX domain | 3.6E-10 | 85 | 199 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 414 | 436 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 50.91 | 30.07 | 71.75 |
| 5d_25C | Five days - 25 degrees Celsius | 48.13 | 28.23 | 68.03 |
| 7d_25C | Seven days - 25 degrees Celsius | 40.37 | 23.09 | 57.65 |
| 10d_25C | Ten days - 25 degrees Celsius | 30.14 | 16.38 | 43.89 |
| 7d_15C | Seven days - 15 degrees Celsius | 41.94 | 23.79 | 60.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 42.60 | 24.67 | 60.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.869372 | no |
| 3d_25C | 7d_25C | 0.373676 | no |
| 3d_25C | 7d_15C | 0.481326 | no |
| 3d_25C | 7d_30C | 0.516577 | no |
| 3d_25C | 10d_25C | 0.029538 | yes |
| 5d_25C | 7d_25C | 0.527416 | no |
| 5d_25C | 7d_15C | 0.644420 | no |
| 5d_25C | 7d_30C | 0.684887 | no |
| 5d_25C | 10d_25C | 0.051659 | no |
| 7d_25C | 7d_15C | 0.916844 | no |
| 7d_25C | 7d_30C | 0.879010 | no |
| 7d_25C | 10d_25C | 0.274004 | no |
| 7d_15C | 7d_30C | 0.968980 | no |
| 7d_15C | 10d_25C | 0.214268 | no |
| 7d_30C | 10d_25C | 0.172892 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9413.t1 MEPKSTQTSGLSHNLHGVLAELHRQPYPYVPNPPTCNKRASVALIIRVRPTYDHWPNSNPTKDASQPVPQRLDEF FSQQWVQHGEPEVLFIKRASRVGDRWTGHVALPGGKRDPEDADDKAVAIREASEEIGLDLTTEDTISVGNLPERL VTTSWGSEPLMVLCPFVFLTTRSDSPTLRLQPAEVASTHWIPLRALLSPSLRTVEYVDMSQRFARQGGFLARIAI RSLMGWMQFSAVRLLPSETHQCTTTPGFVPEENTLQPGLLQRFKGWCLSGQAESSDAAHPLLLWGLTLGILADFL DMLPPHQAVQLWKYPTFTVPDLRLIVSIVTYNLRKRNALNVRSGARPSNTAADSETAALSVTQEPDLGHDHNEVG IGGLGVGRYYGPTDQARDGTSYAVGIMLRGYYDRLRMAIWVFLAWRVAIGSIVGISAWRILRRLR* |
| Coding | >Pro_DTO377G3_2|g9413.t1 ATGGAGCCCAAGTCTACACAAACCTCGGGTCTGTCCCATAATCTGCATGGCGTATTAGCCGAGCTACATCGTCAA CCTTATCCTTACGTCCCAAATCCTCCAACCTGCAACAAGCGCGCCTCGGTTGCCTTGATTATTCGGGTACGACCA ACCTACGACCATTGGCCCAACTCAAACCCCACAAAAGATGCTTCCCAGCCAGTTCCACAACGTTTAGATGAGTTC TTCTCACAGCAATGGGTCCAGCATGGCGAACCGGAGGTTCTGTTCATCAAGCGTGCTTCGCGCGTGGGTGACCGA TGGACTGGTCATGTTGCCCTACCGGGCGGAAAGCGAGACCCGGAAGATGCAGACGATAAAGCTGTAGCCATCAGG GAAGCTTCAGAGGAAATTGGATTGGATTTGACAACGGAGGATACCATTAGTGTGGGCAACCTCCCTGAGCGGCTG GTCACTACCAGCTGGGGGTCCGAACCCTTGATGGTTCTATGTCCCTTTGTATTTCTCACAACTCGCAGCGACTCC CCGACACTTCGATTACAGCCCGCGGAAGTAGCGTCGACACATTGGATTCCCCTGCGCGCCCTCCTATCACCGTCG CTGCGGACCGTGGAATATGTGGATATGTCGCAGCGCTTCGCTCGACAAGGCGGGTTTCTGGCCCGTATTGCAATT CGGTCACTTATGGGCTGGATGCAGTTCTCGGCCGTGAGGCTCCTCCCGTCGGAAACCCATCAATGCACTACAACT CCAGGGTTTGTTCCCGAAGAGAATACACTCCAACCTGGCCTGCTCCAACGTTTCAAGGGATGGTGTCTGAGTGGG CAAGCGGAGTCCAGTGATGCTGCCCATCCGCTGCTCCTCTGGGGTCTCACCCTCGGCATCCTGGCCGACTTCTTG GATATGCTCCCTCCCCACCAAGCTGTGCAGTTGTGGAAATATCCAACATTTACCGTGCCGGATCTGCGGCTGATT GTAAGCATTGTGACTTATAATCTACGGAAGCGTAATGCGCTCAATGTGAGATCGGGTGCTCGTCCTAGTAACACG GCCGCTGATAGCGAAACGGCCGCACTCTCAGTCACACAGGAGCCGGATCTCGGACATGATCACAATGAAGTGGGC ATCGGTGGTCTCGGAGTAGGCAGATATTATGGTCCGACCGACCAAGCAAGAGATGGGACTTCTTATGCTGTTGGA ATCATGCTGCGCGGGTATTATGACCGCTTGCGCATGGCAATCTGGGTTTTCCTGGCCTGGCGTGTAGCCATTGGT TCAATTGTTGGTATTTCAGCCTGGCGAATTCTTCGACGACTGCGTTGA |
| Transcript | >Pro_DTO377G3_2|g9413.t1 ATGGAGCCCAAGTCTACACAAACCTCGGGTCTGTCCCATAATCTGCATGGCGTATTAGCCGAGCTACATCGTCAA CCTTATCCTTACGTCCCAAATCCTCCAACCTGCAACAAGCGCGCCTCGGTTGCCTTGATTATTCGGGTACGACCA ACCTACGACCATTGGCCCAACTCAAACCCCACAAAAGATGCTTCCCAGCCAGTTCCACAACGTTTAGATGAGTTC TTCTCACAGCAATGGGTCCAGCATGGCGAACCGGAGGTTCTGTTCATCAAGCGTGCTTCGCGCGTGGGTGACCGA TGGACTGGTCATGTTGCCCTACCGGGCGGAAAGCGAGACCCGGAAGATGCAGACGATAAAGCTGTAGCCATCAGG GAAGCTTCAGAGGAAATTGGATTGGATTTGACAACGGAGGATACCATTAGTGTGGGCAACCTCCCTGAGCGGCTG GTCACTACCAGCTGGGGGTCCGAACCCTTGATGGTTCTATGTCCCTTTGTATTTCTCACAACTCGCAGCGACTCC CCGACACTTCGATTACAGCCCGCGGAAGTAGCGTCGACACATTGGATTCCCCTGCGCGCCCTCCTATCACCGTCG CTGCGGACCGTGGAATATGTGGATATGTCGCAGCGCTTCGCTCGACAAGGCGGGTTTCTGGCCCGTATTGCAATT CGGTCACTTATGGGCTGGATGCAGTTCTCGGCCGTGAGGCTCCTCCCGTCGGAAACCCATCAATGCACTACAACT CCAGGGTTTGTTCCCGAAGAGAATACACTCCAACCTGGCCTGCTCCAACGTTTCAAGGGATGGTGTCTGAGTGGG CAAGCGGAGTCCAGTGATGCTGCCCATCCGCTGCTCCTCTGGGGTCTCACCCTCGGCATCCTGGCCGACTTCTTG GATATGCTCCCTCCCCACCAAGCTGTGCAGTTGTGGAAATATCCAACATTTACCGTGCCGGATCTGCGGCTGATT GTAAGCATTGTGACTTATAATCTACGGAAGCGTAATGCGCTCAATGTGAGATCGGGTGCTCGTCCTAGTAACACG GCCGCTGATAGCGAAACGGCCGCACTCTCAGTCACACAGGAGCCGGATCTCGGACATGATCACAATGAAGTGGGC ATCGGTGGTCTCGGAGTAGGCAGATATTATGGTCCGACCGACCAAGCAAGAGATGGGACTTCTTATGCTGTTGGA ATCATGCTGCGCGGGTATTATGACCGCTTGCGCATGGCAATCTGGGTTTTCCTGGCCTGGCGTGTAGCCATTGGT TCAATTGTTGGTATTTCAGCCTGGCGAATTCTTCGACGACTGCGTTGA |
| Gene | >Pro_DTO377G3_2|g9413.t1 ATGGAGCCCAAGTCTACACAAACCTCGGGTCTGTCCCATAATCTGCATGGCGTATTAGCCGAGCTACATCGTCAA CCTTATCCTTACGTCCCAAATCCTCCAACCTGCAACAAGCGCGCCTCGGTTGCCTTGATTATTCGGGTACGACCA ACCTACGACCATTGGCCCAACTCAAACCCCACAAAAGATGCTTCCCAGCCAGTTCCACAACGTTTAGATGAGTTC TTCTCACAGCAATGGGTCCAGCATGGCGAACCGGAGGTTCTGTTCATCAAGCGTGCTTCGCGCGTGGGTGACCGA TGGACTGGTCATGTTGCCCTACCGGGCGGAAAGCGAGACCCGGAAGATGCAGACGATAAAGCTGTAGCCATCAGG GAAGCTTCAGAGGAAATTGGATTGGATTTGACAACGGAGGATACCATTAGTGTGGGCAACCTCCCTGAGCGGCTG GTCACTACCAGCTGGGGGTCCGAACCGTGCGAATGCCATTCACCTTCGCCGCTGAGAATTGGATTACTGACTTGA ATTCGCAGCTTGATGGTTCTATGTCCCTTTGTATTTCTCACAACTCGCAGCGACTCCCCGACACTTCGATTACAG CCCGCGGAAGTAGCGTCGACACATTGGATTCCCCTGCGCGCCCTCCTATCACCGTCGCTGCGGACCGTGGAATAT GTGGATATGTCGCAGCGCTTCGCTCGACAAGGCGGGTTTCTGGCCCGTATTGCAATTCGGTCACTTATGGGCTGG ATGCAGTTCTCGGCCGTGAGGCTCCTCCCGTCGGAAACCCATCAATGCACTACAACTCCAGGGTTTGTTCCCGAA GAGAATACACTCCAACCTGGCCTGCTCCAACGTTTCAAGGGATGGTGTCTGAGTGGGCAAGCGGAGTCCAGTGAT GCTGCCCATCCGCTGCTCCTCTGGGGTCTCACCCTCGGCATCCTGGCCGACTTCTTGGATATGCTCCCTCCCCAC CAAGCTGTGCAGTTGTGGAAATATCCAACATTTACCGTGCCGGATCTGCGGCTGATTGTAAGCATTGTGACTTAT AATCTACGGAAGCGTAATGCGCTCAATGTGAGATCGGGTGCTCGTCCTAGTAACACGGCCGCTGATAGCGAAACG GCCGCACTCTCAGTCACACAGGAGCCGGATCTCGGACATGATCACAATGAAGTGGGCATCGGTGGTCTCGGAGTA GGCAGATATTATGGTCCGACCGACCAAGCAAGAGATGGGACTTCTTATGCTGTTGGAATCATGCTGCGCGGGTAT TATGACCGCTTGCGCATGGCAATCTGGGTTTTCCTGGCCTGGCGTGTAGCCATTGGTTCAATTGTTGGTATTTCA GCCTGGCGAATTCTTCGACGACTGCGTTGA |