© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9405.t1 |
| Gene name | |
| Location | scaffold_47:59209..61690 |
| Strand | + |
| Gene length (bp) | 2481 |
| Transcript length (bp) | 2379 |
| Coding sequence length (bp) | 2379 |
| Protein length (aa) | 793 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10443 | RNA12 | RNA12 protein | 2.5E-166 | 330 | 749 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.0E-06 | 166 | 221 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 252 | 274 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 105.63 | 63.75 | 147.52 |
| 5d_25C | Five days - 25 degrees Celsius | 134.52 | 79.98 | 189.06 |
| 7d_25C | Seven days - 25 degrees Celsius | 135.69 | 79.67 | 191.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 170.47 | 99.86 | 241.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 154.34 | 88.82 | 219.86 |
| 7d_30C | Seven days - 30 degrees Celsius | 120.94 | 71.81 | 170.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.320774 | no |
| 3d_25C | 7d_25C | 0.304427 | no |
| 3d_25C | 7d_15C | 0.096024 | no |
| 3d_25C | 7d_30C | 0.626489 | no |
| 3d_25C | 10d_25C | 0.024417 | yes |
| 5d_25C | 7d_25C | 0.981900 | no |
| 5d_25C | 7d_15C | 0.629645 | no |
| 5d_25C | 7d_30C | 0.717767 | no |
| 5d_25C | 10d_25C | 0.343444 | no |
| 7d_25C | 7d_15C | 0.666594 | no |
| 7d_25C | 7d_30C | 0.700628 | no |
| 7d_25C | 10d_25C | 0.374798 | no |
| 7d_15C | 7d_30C | 0.327396 | no |
| 7d_15C | 10d_25C | 0.748931 | no |
| 7d_30C | 10d_25C | 0.134694 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9405.t1 MIRCTSSIRSGHITVGQNEGIIYVNNIFPHRLQWLLRGPLSHIQPLEGLLARVNNPELAAADPTRIVHRVLPTNL NLEIKEVVTRYKEGGAFVKYALKSDISHESIENAIKEHLKTNPVKPWFNPFLKVDADLVRGTPWIEDLYRIPSQT LKVEFLPTSPDKSAAELTQESLYSLFRPYGKILDIQTQPSDSKVLPRYAILRFERPRYAVMARNCMHGFIVSEEA GGGKSGTRFKINYERKIKLFMIRDWILNHPRLVIPAIAALLATITVIIFDPIRTFFITLKIKSSFQSEENPVLQW VRKQASKASLFSFGKRKSDPRGLAAIWEDRQTEIAQLQAWLTETAETFIVIHGPRGSGKRELVLEQALKEHKYKV IIDCKQIQDARGDTTKISRAAAQVGYRPIFSWMNSISSFIDLAAQGMIGTKAGFSETLDAQLSKIWQNTGVAMKR VALEGRRKEDKDFNMSEDEYLEAHPEVRPVVVIDNFLYDEDDSVVLDKLTEWAAGLTSANIAHVIFLTTDASFAK PLSKAMPNQVFRTIALGDCSLEVGRRFVLSHLDAEADDSDDEQNARRKETLRGLDACIKVLGGRVTDLEFMAHRI EAGETPEAAVDRIIEQSASEILKLFILGTESITLQWSREQAWHLIKSIAHSKDGNLLYNKVLLDDVFKDNGEVTL RALEQAELVSIGTDKGFPRYVKPGKPVYRAAFQRLVANKTLQGRLDLLILSQLINNENSSITKYEQELQVLGSLP KYPWELTSRIEWLLRKVHGSQSKILKYESESAALSKSLQKEY* |
| Coding | >Pro_DTO377G3_2|g9405.t1 ATGATACGATGCACATCTTCTATCAGGTCAGGACATATTACAGTAGGACAAAACGAAGGGATTATCTATGTCAAT AATATATTTCCGCACCGACTACAATGGCTGCTGAGGGGACCCCTCAGCCATATTCAGCCTCTCGAGGGACTTTTG GCACGAGTCAACAACCCAGAACTAGCGGCAGCCGACCCGACTCGTATTGTTCATCGAGTTTTGCCCACAAATTTA AATCTGGAGATCAAAGAGGTCGTGACGAGGTACAAAGAGGGAGGCGCATTCGTGAAGTATGCACTTAAGTCGGAC ATCAGCCACGAAAGTATCGAAAATGCAATCAAAGAGCATTTGAAAACCAATCCAGTTAAGCCCTGGTTCAATCCG TTCCTGAAAGTCGATGCAGACCTTGTTCGCGGAACGCCTTGGATCGAAGATCTCTATCGAATCCCAAGCCAGACC CTAAAGGTGGAGTTCTTACCAACGTCGCCAGATAAATCAGCGGCCGAATTGACCCAAGAGTCTTTATACTCATTG TTCCGACCTTACGGCAAAATTCTGGACATCCAAACACAGCCCTCAGATTCGAAAGTCCTACCACGATATGCAATT CTGCGATTCGAGCGCCCTAGGTACGCCGTGATGGCAAGAAACTGCATGCACGGATTTATTGTTTCCGAAGAAGCA GGAGGTGGCAAGTCCGGTACGAGGTTCAAGATCAACTACGAGCGCAAGATCAAGCTGTTTATGATCAGGGATTGG ATTTTGAACCATCCGAGACTAGTGATCCCTGCTATAGCTGCTCTGTTGGCTACTATCACGGTCATCATCTTCGAT CCAATTCGCACGTTCTTCATCACTCTCAAAATCAAGTCGTCGTTCCAGAGTGAAGAGAACCCAGTGCTACAGTGG GTTCGCAAACAAGCCAGCAAAGCGAGCCTGTTCTCATTTGGGAAGCGAAAGTCAGACCCGCGAGGTCTAGCAGCT ATCTGGGAAGACCGACAAACAGAGATTGCGCAACTGCAAGCCTGGCTAACGGAGACCGCGGAGACCTTTATTGTT ATCCATGGTCCTCGTGGCTCAGGGAAACGCGAGTTGGTTTTGGAACAAGCCCTGAAAGAGCACAAGTATAAAGTC ATCATTGACTGCAAGCAAATTCAAGATGCTCGGGGTGATACAACTAAGATTTCACGAGCAGCCGCTCAGGTCGGC TACCGACCGATCTTCTCTTGGATGAACAGTATCAGCAGCTTCATTGACCTTGCTGCACAGGGAATGATCGGCACC AAAGCCGGCTTCTCCGAGACTCTAGATGCGCAGTTGAGCAAGATCTGGCAGAATACTGGTGTCGCTATGAAGCGA GTCGCCTTGGAAGGTAGACGAAAGGAGGACAAAGATTTCAACATGTCCGAAGATGAGTACCTGGAGGCTCATCCC GAGGTGAGACCTGTCGTTGTGATTGACAATTTCCTCTATGACGAGGATGACAGTGTCGTGCTCGACAAACTTACC GAATGGGCGGCTGGTCTGACATCCGCAAATATCGCCCATGTCATCTTCTTGACGACTGATGCCTCGTTTGCAAAG CCATTGAGCAAAGCCATGCCTAACCAAGTGTTCCGCACAATTGCCTTAGGTGACTGCTCGCTCGAAGTTGGTCGT CGTTTCGTGTTGAGTCATCTGGATGCCGAGGCAGACGATAGTGACGATGAACAGAATGCAAGGCGCAAAGAGACG CTTCGTGGCTTGGATGCTTGTATCAAAGTGCTGGGAGGTCGAGTTACTGACTTGGAGTTCATGGCTCATCGAATT GAGGCCGGAGAGACACCTGAAGCTGCCGTGGACCGTATCATTGAACAGTCGGCGTCTGAAATCCTGAAGCTCTTC ATCCTCGGAACAGAGTCAATTACACTCCAGTGGTCCCGTGAGCAGGCGTGGCATCTGATCAAGTCTATCGCCCAC TCCAAGGATGGAAACCTGTTGTACAACAAAGTCCTCCTCGACGATGTATTCAAGGACAACGGCGAGGTCACTCTC CGGGCACTAGAGCAAGCAGAGCTTGTCTCCATCGGGACTGACAAAGGATTCCCACGATACGTCAAACCGGGCAAA CCCGTGTATCGCGCGGCTTTCCAACGTCTGGTTGCGAACAAGACCCTGCAGGGCCGCCTTGACTTGTTAATCCTC TCACAGCTCATTAACAACGAGAATTCAAGTATCACGAAGTATGAACAGGAGCTGCAGGTCCTTGGCTCACTGCCA AAGTACCCCTGGGAGCTAACGTCGCGGATCGAGTGGCTTCTGCGCAAAGTTCACGGATCGCAATCGAAGATTCTC AAGTATGAGAGTGAAAGTGCTGCCTTGTCAAAGTCTTTGCAGAAGGAATATTAA |
| Transcript | >Pro_DTO377G3_2|g9405.t1 ATGATACGATGCACATCTTCTATCAGGTCAGGACATATTACAGTAGGACAAAACGAAGGGATTATCTATGTCAAT AATATATTTCCGCACCGACTACAATGGCTGCTGAGGGGACCCCTCAGCCATATTCAGCCTCTCGAGGGACTTTTG GCACGAGTCAACAACCCAGAACTAGCGGCAGCCGACCCGACTCGTATTGTTCATCGAGTTTTGCCCACAAATTTA AATCTGGAGATCAAAGAGGTCGTGACGAGGTACAAAGAGGGAGGCGCATTCGTGAAGTATGCACTTAAGTCGGAC ATCAGCCACGAAAGTATCGAAAATGCAATCAAAGAGCATTTGAAAACCAATCCAGTTAAGCCCTGGTTCAATCCG TTCCTGAAAGTCGATGCAGACCTTGTTCGCGGAACGCCTTGGATCGAAGATCTCTATCGAATCCCAAGCCAGACC CTAAAGGTGGAGTTCTTACCAACGTCGCCAGATAAATCAGCGGCCGAATTGACCCAAGAGTCTTTATACTCATTG TTCCGACCTTACGGCAAAATTCTGGACATCCAAACACAGCCCTCAGATTCGAAAGTCCTACCACGATATGCAATT CTGCGATTCGAGCGCCCTAGGTACGCCGTGATGGCAAGAAACTGCATGCACGGATTTATTGTTTCCGAAGAAGCA GGAGGTGGCAAGTCCGGTACGAGGTTCAAGATCAACTACGAGCGCAAGATCAAGCTGTTTATGATCAGGGATTGG ATTTTGAACCATCCGAGACTAGTGATCCCTGCTATAGCTGCTCTGTTGGCTACTATCACGGTCATCATCTTCGAT CCAATTCGCACGTTCTTCATCACTCTCAAAATCAAGTCGTCGTTCCAGAGTGAAGAGAACCCAGTGCTACAGTGG GTTCGCAAACAAGCCAGCAAAGCGAGCCTGTTCTCATTTGGGAAGCGAAAGTCAGACCCGCGAGGTCTAGCAGCT ATCTGGGAAGACCGACAAACAGAGATTGCGCAACTGCAAGCCTGGCTAACGGAGACCGCGGAGACCTTTATTGTT ATCCATGGTCCTCGTGGCTCAGGGAAACGCGAGTTGGTTTTGGAACAAGCCCTGAAAGAGCACAAGTATAAAGTC ATCATTGACTGCAAGCAAATTCAAGATGCTCGGGGTGATACAACTAAGATTTCACGAGCAGCCGCTCAGGTCGGC TACCGACCGATCTTCTCTTGGATGAACAGTATCAGCAGCTTCATTGACCTTGCTGCACAGGGAATGATCGGCACC AAAGCCGGCTTCTCCGAGACTCTAGATGCGCAGTTGAGCAAGATCTGGCAGAATACTGGTGTCGCTATGAAGCGA GTCGCCTTGGAAGGTAGACGAAAGGAGGACAAAGATTTCAACATGTCCGAAGATGAGTACCTGGAGGCTCATCCC GAGGTGAGACCTGTCGTTGTGATTGACAATTTCCTCTATGACGAGGATGACAGTGTCGTGCTCGACAAACTTACC GAATGGGCGGCTGGTCTGACATCCGCAAATATCGCCCATGTCATCTTCTTGACGACTGATGCCTCGTTTGCAAAG CCATTGAGCAAAGCCATGCCTAACCAAGTGTTCCGCACAATTGCCTTAGGTGACTGCTCGCTCGAAGTTGGTCGT CGTTTCGTGTTGAGTCATCTGGATGCCGAGGCAGACGATAGTGACGATGAACAGAATGCAAGGCGCAAAGAGACG CTTCGTGGCTTGGATGCTTGTATCAAAGTGCTGGGAGGTCGAGTTACTGACTTGGAGTTCATGGCTCATCGAATT GAGGCCGGAGAGACACCTGAAGCTGCCGTGGACCGTATCATTGAACAGTCGGCGTCTGAAATCCTGAAGCTCTTC ATCCTCGGAACAGAGTCAATTACACTCCAGTGGTCCCGTGAGCAGGCGTGGCATCTGATCAAGTCTATCGCCCAC TCCAAGGATGGAAACCTGTTGTACAACAAAGTCCTCCTCGACGATGTATTCAAGGACAACGGCGAGGTCACTCTC CGGGCACTAGAGCAAGCAGAGCTTGTCTCCATCGGGACTGACAAAGGATTCCCACGATACGTCAAACCGGGCAAA CCCGTGTATCGCGCGGCTTTCCAACGTCTGGTTGCGAACAAGACCCTGCAGGGCCGCCTTGACTTGTTAATCCTC TCACAGCTCATTAACAACGAGAATTCAAGTATCACGAAGTATGAACAGGAGCTGCAGGTCCTTGGCTCACTGCCA AAGTACCCCTGGGAGCTAACGTCGCGGATCGAGTGGCTTCTGCGCAAAGTTCACGGATCGCAATCGAAGATTCTC AAGTATGAGAGTGAAAGTGCTGCCTTGTCAAAGTCTTTGCAGAAGGAATATTAA |
| Gene | >Pro_DTO377G3_2|g9405.t1 ATGATACGATGCACATCTTCTATCAGGTCAGGACATATTACAGTAGGACAAAACGAAGGGATTATCTATGTCAAT AGTGAGCGCCGACTAATTGCAAGCTATCATGTCTATCCACTAACTAGCCCTAGATATATTTCCGCACCGACTACA ATGGCTGCTGAGGGGACCCCTCAGCCATATTCAGCCTCTCGAGGGACTTTTGGCACGAGTCAACAACCCAGAACT AGCGGCAGCCGACCCGACTCGTATTGTTCATCGAGTTTTGCCCACAAATTTAAATCTGGAGATCAAAGAGGTCGT GACGAGGTACAAAGAGGGAGGCGCATTCGTGAAGTATGCACTTAAGTCGGACATCAGCCACGAAAGTATCGAAAA TGCAATCAAAGAGCATTTGAAAACCAATCCAGTTAAGCCCTGGTTCAATCCGTTCCTGAAAGTCGATGCAGACCT TGTTCGCGGAACGCCTTGGATCGAAGATCTCTATCGAATCCCAAGCCAGACCCTAAAGGTGGAGTTCTTACCAAC GTCGCCAGATAAATCAGCGGCCGAATTGACCCAAGAGTCTTTATACTCATTGTTCCGACCTTACGGCAAAATTCT GGACATCCAAACACAGCCCTCAGATTCGAAAGTCCTACCACGATATGCAATTCTGCGATTCGAGCGCCCTAGGTA CGCCGTGATGGCAAGAAACTGCATGCACGGATTTATTGTTTCCGAAGAAGCAGGAGGTGGCAAGTCCGGTACGAG GTTCAAGATCAACTACGAGCGCAAGATCAAGCTGTTTATGATCAGGGATTGGATTTTGAACCATCCGAGACTAGT GATCCCTGCTATAGCTGCTCTGTTGGCTACTATCACGGTCATCATCTTCGATCCAATTCGCACGTTCTTCATCAC TCTCAAAATCAAGTCGTCGTTCCAGAGTGAAGAGAACCCAGTGCTACAGTGGGTTCGCAAACAAGCCAGCAAAGC GAGCCTGTTCTCATTTGGGAAGCGAAAGTCAGACCCGCGAGGTCTAGCAGCTATCTGGGAAGACCGACAAACAGA GATTGCGCAACTGCAAGCCTGGCTAACGGAGACCGCGGAGACCTTTATTGTTATCCATGGTCCTCGTGGCTCAGG GAAACGCGAGTTGGTTTTGGAACAAGCCCTGAAAGAGCACAAGTATAAAGTCATCATTGACTGCAAGCAAATTCA AGATGCTCGGGGTGATACAACTAAGATTTCACGAGCAGCCGCTCAGGTCGGCTACCGACCGATCTTCTCTTGGAT GAACAGTATCAGCAGCTTCATTGACCTTGCTGCACAGGGAATGATCGGCACCAAAGCCGGCTTCTCCGAGACTCT AGATGCGCAGTTGAGCAAGATCTGGCAGAATACTGGTGTCGCTATGAAGCGAGTCGCCTTGGAAGGTAGACGAAA GGAGGACAAAGATTTCAACATGTCCGAAGATGAGTACCTGGAGGCTCATCCCGAGGTGAGACCTGTCGTTGTGAT TGACAATTTCCTCTATGACGAGGATGACAGTGTCGTGCTCGACAAACTTACCGAATGGGCGGCTGGTCTGACATC CGCAAATATCGCCCATGTCATCTTCTTGACGACTGATGCCTCGTTTGCAAAGCCATTGAGCAAAGCCATGCCTAA CCAAGTGTTCCGCACAATTGCCTTAGGTGACTGCTCGCTCGAAGTTGGTCGTCGTTTCGTGTTGAGTCATCTGGA TGCCGAGGCAGACGATAGTGACGATGAACAGAATGCAAGGCGCAAAGAGACGCTTCGTGGCTTGGATGCTTGTAT CAAAGTGCTGGGAGGTCGAGTTACTGACTTGGAGTTCATGGCTCATCGAATTGAGGCCGGAGAGACACCTGAAGG TATGTTTATCTTTTTTTCTACCTGGAGAATTCTATTAACCATTGTATAGCTGCCGTGGACCGTATCATTGAACAG TCGGCGTCTGAAATCCTGAAGCTCTTCATCCTCGGAACAGAGTCAATTACACTCCAGTGGTCCCGTGAGCAGGCG TGGCATCTGATCAAGTCTATCGCCCACTCCAAGGATGGAAACCTGTTGTACAACAAAGTCCTCCTCGACGATGTA TTCAAGGACAACGGCGAGGTCACTCTCCGGGCACTAGAGCAAGCAGAGCTTGTCTCCATCGGGACTGACAAAGGA TTCCCACGATACGTCAAACCGGGCAAACCCGTGTATCGCGCGGCTTTCCAACGTCTGGTTGCGAACAAGACCCTG CAGGGCCGCCTTGACTTGTTAATCCTCTCACAGCTCATTAACAACGAGAATTCAAGTATCACGAAGTATGAACAG GAGCTGCAGGTCCTTGGCTCACTGCCAAAGTACCCCTGGGAGCTAACGTCGCGGATCGAGTGGCTTCTGCGCAAA GTTCACGGATCGCAATCGAAGATTCTCAAGTATGAGAGTGAAAGTGCTGCCTTGTCAAAGTCTTTGCAGAAGGAA TATTAA |