Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9405.t1
Gene name
Locationscaffold_47:59209..61690
Strand+
Gene length (bp)2481
Transcript length (bp)2379
Coding sequence length (bp)2379
Protein length (aa) 793

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10443 RNA12 RNA12 protein 2.5E-166 330 749
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.0E-06 166 221

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 62 0.45

Transmembrane Domains

Domain # Start End Length
1 252 274 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9405.t1
MIRCTSSIRSGHITVGQNEGIIYVNNIFPHRLQWLLRGPLSHIQPLEGLLARVNNPELAAADPTRIVHRVLPTNL
NLEIKEVVTRYKEGGAFVKYALKSDISHESIENAIKEHLKTNPVKPWFNPFLKVDADLVRGTPWIEDLYRIPSQT
LKVEFLPTSPDKSAAELTQESLYSLFRPYGKILDIQTQPSDSKVLPRYAILRFERPRYAVMARNCMHGFIVSEEA
GGGKSGTRFKINYERKIKLFMIRDWILNHPRLVIPAIAALLATITVIIFDPIRTFFITLKIKSSFQSEENPVLQW
VRKQASKASLFSFGKRKSDPRGLAAIWEDRQTEIAQLQAWLTETAETFIVIHGPRGSGKRELVLEQALKEHKYKV
IIDCKQIQDARGDTTKISRAAAQVGYRPIFSWMNSISSFIDLAAQGMIGTKAGFSETLDAQLSKIWQNTGVAMKR
VALEGRRKEDKDFNMSEDEYLEAHPEVRPVVVIDNFLYDEDDSVVLDKLTEWAAGLTSANIAHVIFLTTDASFAK
PLSKAMPNQVFRTIALGDCSLEVGRRFVLSHLDAEADDSDDEQNARRKETLRGLDACIKVLGGRVTDLEFMAHRI
EAGETPEAAVDRIIEQSASEILKLFILGTESITLQWSREQAWHLIKSIAHSKDGNLLYNKVLLDDVFKDNGEVTL
RALEQAELVSIGTDKGFPRYVKPGKPVYRAAFQRLVANKTLQGRLDLLILSQLINNENSSITKYEQELQVLGSLP
KYPWELTSRIEWLLRKVHGSQSKILKYESESAALSKSLQKEY*
Coding >Pro_DTO377G3_2|g9405.t1
ATGATACGATGCACATCTTCTATCAGGTCAGGACATATTACAGTAGGACAAAACGAAGGGATTATCTATGTCAAT
AATATATTTCCGCACCGACTACAATGGCTGCTGAGGGGACCCCTCAGCCATATTCAGCCTCTCGAGGGACTTTTG
GCACGAGTCAACAACCCAGAACTAGCGGCAGCCGACCCGACTCGTATTGTTCATCGAGTTTTGCCCACAAATTTA
AATCTGGAGATCAAAGAGGTCGTGACGAGGTACAAAGAGGGAGGCGCATTCGTGAAGTATGCACTTAAGTCGGAC
ATCAGCCACGAAAGTATCGAAAATGCAATCAAAGAGCATTTGAAAACCAATCCAGTTAAGCCCTGGTTCAATCCG
TTCCTGAAAGTCGATGCAGACCTTGTTCGCGGAACGCCTTGGATCGAAGATCTCTATCGAATCCCAAGCCAGACC
CTAAAGGTGGAGTTCTTACCAACGTCGCCAGATAAATCAGCGGCCGAATTGACCCAAGAGTCTTTATACTCATTG
TTCCGACCTTACGGCAAAATTCTGGACATCCAAACACAGCCCTCAGATTCGAAAGTCCTACCACGATATGCAATT
CTGCGATTCGAGCGCCCTAGGTACGCCGTGATGGCAAGAAACTGCATGCACGGATTTATTGTTTCCGAAGAAGCA
GGAGGTGGCAAGTCCGGTACGAGGTTCAAGATCAACTACGAGCGCAAGATCAAGCTGTTTATGATCAGGGATTGG
ATTTTGAACCATCCGAGACTAGTGATCCCTGCTATAGCTGCTCTGTTGGCTACTATCACGGTCATCATCTTCGAT
CCAATTCGCACGTTCTTCATCACTCTCAAAATCAAGTCGTCGTTCCAGAGTGAAGAGAACCCAGTGCTACAGTGG
GTTCGCAAACAAGCCAGCAAAGCGAGCCTGTTCTCATTTGGGAAGCGAAAGTCAGACCCGCGAGGTCTAGCAGCT
ATCTGGGAAGACCGACAAACAGAGATTGCGCAACTGCAAGCCTGGCTAACGGAGACCGCGGAGACCTTTATTGTT
ATCCATGGTCCTCGTGGCTCAGGGAAACGCGAGTTGGTTTTGGAACAAGCCCTGAAAGAGCACAAGTATAAAGTC
ATCATTGACTGCAAGCAAATTCAAGATGCTCGGGGTGATACAACTAAGATTTCACGAGCAGCCGCTCAGGTCGGC
TACCGACCGATCTTCTCTTGGATGAACAGTATCAGCAGCTTCATTGACCTTGCTGCACAGGGAATGATCGGCACC
AAAGCCGGCTTCTCCGAGACTCTAGATGCGCAGTTGAGCAAGATCTGGCAGAATACTGGTGTCGCTATGAAGCGA
GTCGCCTTGGAAGGTAGACGAAAGGAGGACAAAGATTTCAACATGTCCGAAGATGAGTACCTGGAGGCTCATCCC
GAGGTGAGACCTGTCGTTGTGATTGACAATTTCCTCTATGACGAGGATGACAGTGTCGTGCTCGACAAACTTACC
GAATGGGCGGCTGGTCTGACATCCGCAAATATCGCCCATGTCATCTTCTTGACGACTGATGCCTCGTTTGCAAAG
CCATTGAGCAAAGCCATGCCTAACCAAGTGTTCCGCACAATTGCCTTAGGTGACTGCTCGCTCGAAGTTGGTCGT
CGTTTCGTGTTGAGTCATCTGGATGCCGAGGCAGACGATAGTGACGATGAACAGAATGCAAGGCGCAAAGAGACG
CTTCGTGGCTTGGATGCTTGTATCAAAGTGCTGGGAGGTCGAGTTACTGACTTGGAGTTCATGGCTCATCGAATT
GAGGCCGGAGAGACACCTGAAGCTGCCGTGGACCGTATCATTGAACAGTCGGCGTCTGAAATCCTGAAGCTCTTC
ATCCTCGGAACAGAGTCAATTACACTCCAGTGGTCCCGTGAGCAGGCGTGGCATCTGATCAAGTCTATCGCCCAC
TCCAAGGATGGAAACCTGTTGTACAACAAAGTCCTCCTCGACGATGTATTCAAGGACAACGGCGAGGTCACTCTC
CGGGCACTAGAGCAAGCAGAGCTTGTCTCCATCGGGACTGACAAAGGATTCCCACGATACGTCAAACCGGGCAAA
CCCGTGTATCGCGCGGCTTTCCAACGTCTGGTTGCGAACAAGACCCTGCAGGGCCGCCTTGACTTGTTAATCCTC
TCACAGCTCATTAACAACGAGAATTCAAGTATCACGAAGTATGAACAGGAGCTGCAGGTCCTTGGCTCACTGCCA
AAGTACCCCTGGGAGCTAACGTCGCGGATCGAGTGGCTTCTGCGCAAAGTTCACGGATCGCAATCGAAGATTCTC
AAGTATGAGAGTGAAAGTGCTGCCTTGTCAAAGTCTTTGCAGAAGGAATATTAA
Transcript >Pro_DTO377G3_2|g9405.t1
ATGATACGATGCACATCTTCTATCAGGTCAGGACATATTACAGTAGGACAAAACGAAGGGATTATCTATGTCAAT
AATATATTTCCGCACCGACTACAATGGCTGCTGAGGGGACCCCTCAGCCATATTCAGCCTCTCGAGGGACTTTTG
GCACGAGTCAACAACCCAGAACTAGCGGCAGCCGACCCGACTCGTATTGTTCATCGAGTTTTGCCCACAAATTTA
AATCTGGAGATCAAAGAGGTCGTGACGAGGTACAAAGAGGGAGGCGCATTCGTGAAGTATGCACTTAAGTCGGAC
ATCAGCCACGAAAGTATCGAAAATGCAATCAAAGAGCATTTGAAAACCAATCCAGTTAAGCCCTGGTTCAATCCG
TTCCTGAAAGTCGATGCAGACCTTGTTCGCGGAACGCCTTGGATCGAAGATCTCTATCGAATCCCAAGCCAGACC
CTAAAGGTGGAGTTCTTACCAACGTCGCCAGATAAATCAGCGGCCGAATTGACCCAAGAGTCTTTATACTCATTG
TTCCGACCTTACGGCAAAATTCTGGACATCCAAACACAGCCCTCAGATTCGAAAGTCCTACCACGATATGCAATT
CTGCGATTCGAGCGCCCTAGGTACGCCGTGATGGCAAGAAACTGCATGCACGGATTTATTGTTTCCGAAGAAGCA
GGAGGTGGCAAGTCCGGTACGAGGTTCAAGATCAACTACGAGCGCAAGATCAAGCTGTTTATGATCAGGGATTGG
ATTTTGAACCATCCGAGACTAGTGATCCCTGCTATAGCTGCTCTGTTGGCTACTATCACGGTCATCATCTTCGAT
CCAATTCGCACGTTCTTCATCACTCTCAAAATCAAGTCGTCGTTCCAGAGTGAAGAGAACCCAGTGCTACAGTGG
GTTCGCAAACAAGCCAGCAAAGCGAGCCTGTTCTCATTTGGGAAGCGAAAGTCAGACCCGCGAGGTCTAGCAGCT
ATCTGGGAAGACCGACAAACAGAGATTGCGCAACTGCAAGCCTGGCTAACGGAGACCGCGGAGACCTTTATTGTT
ATCCATGGTCCTCGTGGCTCAGGGAAACGCGAGTTGGTTTTGGAACAAGCCCTGAAAGAGCACAAGTATAAAGTC
ATCATTGACTGCAAGCAAATTCAAGATGCTCGGGGTGATACAACTAAGATTTCACGAGCAGCCGCTCAGGTCGGC
TACCGACCGATCTTCTCTTGGATGAACAGTATCAGCAGCTTCATTGACCTTGCTGCACAGGGAATGATCGGCACC
AAAGCCGGCTTCTCCGAGACTCTAGATGCGCAGTTGAGCAAGATCTGGCAGAATACTGGTGTCGCTATGAAGCGA
GTCGCCTTGGAAGGTAGACGAAAGGAGGACAAAGATTTCAACATGTCCGAAGATGAGTACCTGGAGGCTCATCCC
GAGGTGAGACCTGTCGTTGTGATTGACAATTTCCTCTATGACGAGGATGACAGTGTCGTGCTCGACAAACTTACC
GAATGGGCGGCTGGTCTGACATCCGCAAATATCGCCCATGTCATCTTCTTGACGACTGATGCCTCGTTTGCAAAG
CCATTGAGCAAAGCCATGCCTAACCAAGTGTTCCGCACAATTGCCTTAGGTGACTGCTCGCTCGAAGTTGGTCGT
CGTTTCGTGTTGAGTCATCTGGATGCCGAGGCAGACGATAGTGACGATGAACAGAATGCAAGGCGCAAAGAGACG
CTTCGTGGCTTGGATGCTTGTATCAAAGTGCTGGGAGGTCGAGTTACTGACTTGGAGTTCATGGCTCATCGAATT
GAGGCCGGAGAGACACCTGAAGCTGCCGTGGACCGTATCATTGAACAGTCGGCGTCTGAAATCCTGAAGCTCTTC
ATCCTCGGAACAGAGTCAATTACACTCCAGTGGTCCCGTGAGCAGGCGTGGCATCTGATCAAGTCTATCGCCCAC
TCCAAGGATGGAAACCTGTTGTACAACAAAGTCCTCCTCGACGATGTATTCAAGGACAACGGCGAGGTCACTCTC
CGGGCACTAGAGCAAGCAGAGCTTGTCTCCATCGGGACTGACAAAGGATTCCCACGATACGTCAAACCGGGCAAA
CCCGTGTATCGCGCGGCTTTCCAACGTCTGGTTGCGAACAAGACCCTGCAGGGCCGCCTTGACTTGTTAATCCTC
TCACAGCTCATTAACAACGAGAATTCAAGTATCACGAAGTATGAACAGGAGCTGCAGGTCCTTGGCTCACTGCCA
AAGTACCCCTGGGAGCTAACGTCGCGGATCGAGTGGCTTCTGCGCAAAGTTCACGGATCGCAATCGAAGATTCTC
AAGTATGAGAGTGAAAGTGCTGCCTTGTCAAAGTCTTTGCAGAAGGAATATTAA
Gene >Pro_DTO377G3_2|g9405.t1
ATGATACGATGCACATCTTCTATCAGGTCAGGACATATTACAGTAGGACAAAACGAAGGGATTATCTATGTCAAT
AGTGAGCGCCGACTAATTGCAAGCTATCATGTCTATCCACTAACTAGCCCTAGATATATTTCCGCACCGACTACA
ATGGCTGCTGAGGGGACCCCTCAGCCATATTCAGCCTCTCGAGGGACTTTTGGCACGAGTCAACAACCCAGAACT
AGCGGCAGCCGACCCGACTCGTATTGTTCATCGAGTTTTGCCCACAAATTTAAATCTGGAGATCAAAGAGGTCGT
GACGAGGTACAAAGAGGGAGGCGCATTCGTGAAGTATGCACTTAAGTCGGACATCAGCCACGAAAGTATCGAAAA
TGCAATCAAAGAGCATTTGAAAACCAATCCAGTTAAGCCCTGGTTCAATCCGTTCCTGAAAGTCGATGCAGACCT
TGTTCGCGGAACGCCTTGGATCGAAGATCTCTATCGAATCCCAAGCCAGACCCTAAAGGTGGAGTTCTTACCAAC
GTCGCCAGATAAATCAGCGGCCGAATTGACCCAAGAGTCTTTATACTCATTGTTCCGACCTTACGGCAAAATTCT
GGACATCCAAACACAGCCCTCAGATTCGAAAGTCCTACCACGATATGCAATTCTGCGATTCGAGCGCCCTAGGTA
CGCCGTGATGGCAAGAAACTGCATGCACGGATTTATTGTTTCCGAAGAAGCAGGAGGTGGCAAGTCCGGTACGAG
GTTCAAGATCAACTACGAGCGCAAGATCAAGCTGTTTATGATCAGGGATTGGATTTTGAACCATCCGAGACTAGT
GATCCCTGCTATAGCTGCTCTGTTGGCTACTATCACGGTCATCATCTTCGATCCAATTCGCACGTTCTTCATCAC
TCTCAAAATCAAGTCGTCGTTCCAGAGTGAAGAGAACCCAGTGCTACAGTGGGTTCGCAAACAAGCCAGCAAAGC
GAGCCTGTTCTCATTTGGGAAGCGAAAGTCAGACCCGCGAGGTCTAGCAGCTATCTGGGAAGACCGACAAACAGA
GATTGCGCAACTGCAAGCCTGGCTAACGGAGACCGCGGAGACCTTTATTGTTATCCATGGTCCTCGTGGCTCAGG
GAAACGCGAGTTGGTTTTGGAACAAGCCCTGAAAGAGCACAAGTATAAAGTCATCATTGACTGCAAGCAAATTCA
AGATGCTCGGGGTGATACAACTAAGATTTCACGAGCAGCCGCTCAGGTCGGCTACCGACCGATCTTCTCTTGGAT
GAACAGTATCAGCAGCTTCATTGACCTTGCTGCACAGGGAATGATCGGCACCAAAGCCGGCTTCTCCGAGACTCT
AGATGCGCAGTTGAGCAAGATCTGGCAGAATACTGGTGTCGCTATGAAGCGAGTCGCCTTGGAAGGTAGACGAAA
GGAGGACAAAGATTTCAACATGTCCGAAGATGAGTACCTGGAGGCTCATCCCGAGGTGAGACCTGTCGTTGTGAT
TGACAATTTCCTCTATGACGAGGATGACAGTGTCGTGCTCGACAAACTTACCGAATGGGCGGCTGGTCTGACATC
CGCAAATATCGCCCATGTCATCTTCTTGACGACTGATGCCTCGTTTGCAAAGCCATTGAGCAAAGCCATGCCTAA
CCAAGTGTTCCGCACAATTGCCTTAGGTGACTGCTCGCTCGAAGTTGGTCGTCGTTTCGTGTTGAGTCATCTGGA
TGCCGAGGCAGACGATAGTGACGATGAACAGAATGCAAGGCGCAAAGAGACGCTTCGTGGCTTGGATGCTTGTAT
CAAAGTGCTGGGAGGTCGAGTTACTGACTTGGAGTTCATGGCTCATCGAATTGAGGCCGGAGAGACACCTGAAGG
TATGTTTATCTTTTTTTCTACCTGGAGAATTCTATTAACCATTGTATAGCTGCCGTGGACCGTATCATTGAACAG
TCGGCGTCTGAAATCCTGAAGCTCTTCATCCTCGGAACAGAGTCAATTACACTCCAGTGGTCCCGTGAGCAGGCG
TGGCATCTGATCAAGTCTATCGCCCACTCCAAGGATGGAAACCTGTTGTACAACAAAGTCCTCCTCGACGATGTA
TTCAAGGACAACGGCGAGGTCACTCTCCGGGCACTAGAGCAAGCAGAGCTTGTCTCCATCGGGACTGACAAAGGA
TTCCCACGATACGTCAAACCGGGCAAACCCGTGTATCGCGCGGCTTTCCAACGTCTGGTTGCGAACAAGACCCTG
CAGGGCCGCCTTGACTTGTTAATCCTCTCACAGCTCATTAACAACGAGAATTCAAGTATCACGAAGTATGAACAG
GAGCTGCAGGTCCTTGGCTCACTGCCAAAGTACCCCTGGGAGCTAACGTCGCGGATCGAGTGGCTTCTGCGCAAA
GTTCACGGATCGCAATCGAAGATTCTCAAGTATGAGAGTGAAAGTGCTGCCTTGTCAAAGTCTTTGCAGAAGGAA
TATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail