Protein ID | Pro_DTO377G3_2|g9405.t1 |
Gene name | |
Location | scaffold_47:59209..61690 |
Strand | + |
Gene length (bp) | 2481 |
Transcript length (bp) | 2379 |
Coding sequence length (bp) | 2379 |
Protein length (aa) | 793 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF10443 | RNA12 | RNA12 protein | 2.5E-166 | 330 | 749 |
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.0E-06 | 166 | 221 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0097159 | organic cyclic compound binding | No |
GO:0005488 | binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 62 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 252 | 274 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g9405.t1 MIRCTSSIRSGHITVGQNEGIIYVNNIFPHRLQWLLRGPLSHIQPLEGLLARVNNPELAAADPTRIVHRVLPTNL NLEIKEVVTRYKEGGAFVKYALKSDISHESIENAIKEHLKTNPVKPWFNPFLKVDADLVRGTPWIEDLYRIPSQT LKVEFLPTSPDKSAAELTQESLYSLFRPYGKILDIQTQPSDSKVLPRYAILRFERPRYAVMARNCMHGFIVSEEA GGGKSGTRFKINYERKIKLFMIRDWILNHPRLVIPAIAALLATITVIIFDPIRTFFITLKIKSSFQSEENPVLQW VRKQASKASLFSFGKRKSDPRGLAAIWEDRQTEIAQLQAWLTETAETFIVIHGPRGSGKRELVLEQALKEHKYKV IIDCKQIQDARGDTTKISRAAAQVGYRPIFSWMNSISSFIDLAAQGMIGTKAGFSETLDAQLSKIWQNTGVAMKR VALEGRRKEDKDFNMSEDEYLEAHPEVRPVVVIDNFLYDEDDSVVLDKLTEWAAGLTSANIAHVIFLTTDASFAK PLSKAMPNQVFRTIALGDCSLEVGRRFVLSHLDAEADDSDDEQNARRKETLRGLDACIKVLGGRVTDLEFMAHRI EAGETPEAAVDRIIEQSASEILKLFILGTESITLQWSREQAWHLIKSIAHSKDGNLLYNKVLLDDVFKDNGEVTL RALEQAELVSIGTDKGFPRYVKPGKPVYRAAFQRLVANKTLQGRLDLLILSQLINNENSSITKYEQELQVLGSLP KYPWELTSRIEWLLRKVHGSQSKILKYESESAALSKSLQKEY* |
Coding | >Pro_DTO377G3_2|g9405.t1 ATGATACGATGCACATCTTCTATCAGGTCAGGACATATTACAGTAGGACAAAACGAAGGGATTATCTATGTCAAT AATATATTTCCGCACCGACTACAATGGCTGCTGAGGGGACCCCTCAGCCATATTCAGCCTCTCGAGGGACTTTTG GCACGAGTCAACAACCCAGAACTAGCGGCAGCCGACCCGACTCGTATTGTTCATCGAGTTTTGCCCACAAATTTA AATCTGGAGATCAAAGAGGTCGTGACGAGGTACAAAGAGGGAGGCGCATTCGTGAAGTATGCACTTAAGTCGGAC ATCAGCCACGAAAGTATCGAAAATGCAATCAAAGAGCATTTGAAAACCAATCCAGTTAAGCCCTGGTTCAATCCG TTCCTGAAAGTCGATGCAGACCTTGTTCGCGGAACGCCTTGGATCGAAGATCTCTATCGAATCCCAAGCCAGACC CTAAAGGTGGAGTTCTTACCAACGTCGCCAGATAAATCAGCGGCCGAATTGACCCAAGAGTCTTTATACTCATTG TTCCGACCTTACGGCAAAATTCTGGACATCCAAACACAGCCCTCAGATTCGAAAGTCCTACCACGATATGCAATT CTGCGATTCGAGCGCCCTAGGTACGCCGTGATGGCAAGAAACTGCATGCACGGATTTATTGTTTCCGAAGAAGCA GGAGGTGGCAAGTCCGGTACGAGGTTCAAGATCAACTACGAGCGCAAGATCAAGCTGTTTATGATCAGGGATTGG ATTTTGAACCATCCGAGACTAGTGATCCCTGCTATAGCTGCTCTGTTGGCTACTATCACGGTCATCATCTTCGAT CCAATTCGCACGTTCTTCATCACTCTCAAAATCAAGTCGTCGTTCCAGAGTGAAGAGAACCCAGTGCTACAGTGG GTTCGCAAACAAGCCAGCAAAGCGAGCCTGTTCTCATTTGGGAAGCGAAAGTCAGACCCGCGAGGTCTAGCAGCT ATCTGGGAAGACCGACAAACAGAGATTGCGCAACTGCAAGCCTGGCTAACGGAGACCGCGGAGACCTTTATTGTT ATCCATGGTCCTCGTGGCTCAGGGAAACGCGAGTTGGTTTTGGAACAAGCCCTGAAAGAGCACAAGTATAAAGTC ATCATTGACTGCAAGCAAATTCAAGATGCTCGGGGTGATACAACTAAGATTTCACGAGCAGCCGCTCAGGTCGGC TACCGACCGATCTTCTCTTGGATGAACAGTATCAGCAGCTTCATTGACCTTGCTGCACAGGGAATGATCGGCACC AAAGCCGGCTTCTCCGAGACTCTAGATGCGCAGTTGAGCAAGATCTGGCAGAATACTGGTGTCGCTATGAAGCGA GTCGCCTTGGAAGGTAGACGAAAGGAGGACAAAGATTTCAACATGTCCGAAGATGAGTACCTGGAGGCTCATCCC GAGGTGAGACCTGTCGTTGTGATTGACAATTTCCTCTATGACGAGGATGACAGTGTCGTGCTCGACAAACTTACC GAATGGGCGGCTGGTCTGACATCCGCAAATATCGCCCATGTCATCTTCTTGACGACTGATGCCTCGTTTGCAAAG CCATTGAGCAAAGCCATGCCTAACCAAGTGTTCCGCACAATTGCCTTAGGTGACTGCTCGCTCGAAGTTGGTCGT CGTTTCGTGTTGAGTCATCTGGATGCCGAGGCAGACGATAGTGACGATGAACAGAATGCAAGGCGCAAAGAGACG CTTCGTGGCTTGGATGCTTGTATCAAAGTGCTGGGAGGTCGAGTTACTGACTTGGAGTTCATGGCTCATCGAATT GAGGCCGGAGAGACACCTGAAGCTGCCGTGGACCGTATCATTGAACAGTCGGCGTCTGAAATCCTGAAGCTCTTC ATCCTCGGAACAGAGTCAATTACACTCCAGTGGTCCCGTGAGCAGGCGTGGCATCTGATCAAGTCTATCGCCCAC TCCAAGGATGGAAACCTGTTGTACAACAAAGTCCTCCTCGACGATGTATTCAAGGACAACGGCGAGGTCACTCTC CGGGCACTAGAGCAAGCAGAGCTTGTCTCCATCGGGACTGACAAAGGATTCCCACGATACGTCAAACCGGGCAAA CCCGTGTATCGCGCGGCTTTCCAACGTCTGGTTGCGAACAAGACCCTGCAGGGCCGCCTTGACTTGTTAATCCTC TCACAGCTCATTAACAACGAGAATTCAAGTATCACGAAGTATGAACAGGAGCTGCAGGTCCTTGGCTCACTGCCA AAGTACCCCTGGGAGCTAACGTCGCGGATCGAGTGGCTTCTGCGCAAAGTTCACGGATCGCAATCGAAGATTCTC AAGTATGAGAGTGAAAGTGCTGCCTTGTCAAAGTCTTTGCAGAAGGAATATTAA |
Transcript | >Pro_DTO377G3_2|g9405.t1 ATGATACGATGCACATCTTCTATCAGGTCAGGACATATTACAGTAGGACAAAACGAAGGGATTATCTATGTCAAT AATATATTTCCGCACCGACTACAATGGCTGCTGAGGGGACCCCTCAGCCATATTCAGCCTCTCGAGGGACTTTTG GCACGAGTCAACAACCCAGAACTAGCGGCAGCCGACCCGACTCGTATTGTTCATCGAGTTTTGCCCACAAATTTA AATCTGGAGATCAAAGAGGTCGTGACGAGGTACAAAGAGGGAGGCGCATTCGTGAAGTATGCACTTAAGTCGGAC ATCAGCCACGAAAGTATCGAAAATGCAATCAAAGAGCATTTGAAAACCAATCCAGTTAAGCCCTGGTTCAATCCG TTCCTGAAAGTCGATGCAGACCTTGTTCGCGGAACGCCTTGGATCGAAGATCTCTATCGAATCCCAAGCCAGACC CTAAAGGTGGAGTTCTTACCAACGTCGCCAGATAAATCAGCGGCCGAATTGACCCAAGAGTCTTTATACTCATTG TTCCGACCTTACGGCAAAATTCTGGACATCCAAACACAGCCCTCAGATTCGAAAGTCCTACCACGATATGCAATT CTGCGATTCGAGCGCCCTAGGTACGCCGTGATGGCAAGAAACTGCATGCACGGATTTATTGTTTCCGAAGAAGCA GGAGGTGGCAAGTCCGGTACGAGGTTCAAGATCAACTACGAGCGCAAGATCAAGCTGTTTATGATCAGGGATTGG ATTTTGAACCATCCGAGACTAGTGATCCCTGCTATAGCTGCTCTGTTGGCTACTATCACGGTCATCATCTTCGAT CCAATTCGCACGTTCTTCATCACTCTCAAAATCAAGTCGTCGTTCCAGAGTGAAGAGAACCCAGTGCTACAGTGG GTTCGCAAACAAGCCAGCAAAGCGAGCCTGTTCTCATTTGGGAAGCGAAAGTCAGACCCGCGAGGTCTAGCAGCT ATCTGGGAAGACCGACAAACAGAGATTGCGCAACTGCAAGCCTGGCTAACGGAGACCGCGGAGACCTTTATTGTT ATCCATGGTCCTCGTGGCTCAGGGAAACGCGAGTTGGTTTTGGAACAAGCCCTGAAAGAGCACAAGTATAAAGTC ATCATTGACTGCAAGCAAATTCAAGATGCTCGGGGTGATACAACTAAGATTTCACGAGCAGCCGCTCAGGTCGGC TACCGACCGATCTTCTCTTGGATGAACAGTATCAGCAGCTTCATTGACCTTGCTGCACAGGGAATGATCGGCACC AAAGCCGGCTTCTCCGAGACTCTAGATGCGCAGTTGAGCAAGATCTGGCAGAATACTGGTGTCGCTATGAAGCGA GTCGCCTTGGAAGGTAGACGAAAGGAGGACAAAGATTTCAACATGTCCGAAGATGAGTACCTGGAGGCTCATCCC GAGGTGAGACCTGTCGTTGTGATTGACAATTTCCTCTATGACGAGGATGACAGTGTCGTGCTCGACAAACTTACC GAATGGGCGGCTGGTCTGACATCCGCAAATATCGCCCATGTCATCTTCTTGACGACTGATGCCTCGTTTGCAAAG CCATTGAGCAAAGCCATGCCTAACCAAGTGTTCCGCACAATTGCCTTAGGTGACTGCTCGCTCGAAGTTGGTCGT CGTTTCGTGTTGAGTCATCTGGATGCCGAGGCAGACGATAGTGACGATGAACAGAATGCAAGGCGCAAAGAGACG CTTCGTGGCTTGGATGCTTGTATCAAAGTGCTGGGAGGTCGAGTTACTGACTTGGAGTTCATGGCTCATCGAATT GAGGCCGGAGAGACACCTGAAGCTGCCGTGGACCGTATCATTGAACAGTCGGCGTCTGAAATCCTGAAGCTCTTC ATCCTCGGAACAGAGTCAATTACACTCCAGTGGTCCCGTGAGCAGGCGTGGCATCTGATCAAGTCTATCGCCCAC TCCAAGGATGGAAACCTGTTGTACAACAAAGTCCTCCTCGACGATGTATTCAAGGACAACGGCGAGGTCACTCTC CGGGCACTAGAGCAAGCAGAGCTTGTCTCCATCGGGACTGACAAAGGATTCCCACGATACGTCAAACCGGGCAAA CCCGTGTATCGCGCGGCTTTCCAACGTCTGGTTGCGAACAAGACCCTGCAGGGCCGCCTTGACTTGTTAATCCTC TCACAGCTCATTAACAACGAGAATTCAAGTATCACGAAGTATGAACAGGAGCTGCAGGTCCTTGGCTCACTGCCA AAGTACCCCTGGGAGCTAACGTCGCGGATCGAGTGGCTTCTGCGCAAAGTTCACGGATCGCAATCGAAGATTCTC AAGTATGAGAGTGAAAGTGCTGCCTTGTCAAAGTCTTTGCAGAAGGAATATTAA |
Gene | >Pro_DTO377G3_2|g9405.t1 ATGATACGATGCACATCTTCTATCAGGTCAGGACATATTACAGTAGGACAAAACGAAGGGATTATCTATGTCAAT AGTGAGCGCCGACTAATTGCAAGCTATCATGTCTATCCACTAACTAGCCCTAGATATATTTCCGCACCGACTACA ATGGCTGCTGAGGGGACCCCTCAGCCATATTCAGCCTCTCGAGGGACTTTTGGCACGAGTCAACAACCCAGAACT AGCGGCAGCCGACCCGACTCGTATTGTTCATCGAGTTTTGCCCACAAATTTAAATCTGGAGATCAAAGAGGTCGT GACGAGGTACAAAGAGGGAGGCGCATTCGTGAAGTATGCACTTAAGTCGGACATCAGCCACGAAAGTATCGAAAA TGCAATCAAAGAGCATTTGAAAACCAATCCAGTTAAGCCCTGGTTCAATCCGTTCCTGAAAGTCGATGCAGACCT TGTTCGCGGAACGCCTTGGATCGAAGATCTCTATCGAATCCCAAGCCAGACCCTAAAGGTGGAGTTCTTACCAAC GTCGCCAGATAAATCAGCGGCCGAATTGACCCAAGAGTCTTTATACTCATTGTTCCGACCTTACGGCAAAATTCT GGACATCCAAACACAGCCCTCAGATTCGAAAGTCCTACCACGATATGCAATTCTGCGATTCGAGCGCCCTAGGTA CGCCGTGATGGCAAGAAACTGCATGCACGGATTTATTGTTTCCGAAGAAGCAGGAGGTGGCAAGTCCGGTACGAG GTTCAAGATCAACTACGAGCGCAAGATCAAGCTGTTTATGATCAGGGATTGGATTTTGAACCATCCGAGACTAGT GATCCCTGCTATAGCTGCTCTGTTGGCTACTATCACGGTCATCATCTTCGATCCAATTCGCACGTTCTTCATCAC TCTCAAAATCAAGTCGTCGTTCCAGAGTGAAGAGAACCCAGTGCTACAGTGGGTTCGCAAACAAGCCAGCAAAGC GAGCCTGTTCTCATTTGGGAAGCGAAAGTCAGACCCGCGAGGTCTAGCAGCTATCTGGGAAGACCGACAAACAGA GATTGCGCAACTGCAAGCCTGGCTAACGGAGACCGCGGAGACCTTTATTGTTATCCATGGTCCTCGTGGCTCAGG GAAACGCGAGTTGGTTTTGGAACAAGCCCTGAAAGAGCACAAGTATAAAGTCATCATTGACTGCAAGCAAATTCA AGATGCTCGGGGTGATACAACTAAGATTTCACGAGCAGCCGCTCAGGTCGGCTACCGACCGATCTTCTCTTGGAT GAACAGTATCAGCAGCTTCATTGACCTTGCTGCACAGGGAATGATCGGCACCAAAGCCGGCTTCTCCGAGACTCT AGATGCGCAGTTGAGCAAGATCTGGCAGAATACTGGTGTCGCTATGAAGCGAGTCGCCTTGGAAGGTAGACGAAA GGAGGACAAAGATTTCAACATGTCCGAAGATGAGTACCTGGAGGCTCATCCCGAGGTGAGACCTGTCGTTGTGAT TGACAATTTCCTCTATGACGAGGATGACAGTGTCGTGCTCGACAAACTTACCGAATGGGCGGCTGGTCTGACATC CGCAAATATCGCCCATGTCATCTTCTTGACGACTGATGCCTCGTTTGCAAAGCCATTGAGCAAAGCCATGCCTAA CCAAGTGTTCCGCACAATTGCCTTAGGTGACTGCTCGCTCGAAGTTGGTCGTCGTTTCGTGTTGAGTCATCTGGA TGCCGAGGCAGACGATAGTGACGATGAACAGAATGCAAGGCGCAAAGAGACGCTTCGTGGCTTGGATGCTTGTAT CAAAGTGCTGGGAGGTCGAGTTACTGACTTGGAGTTCATGGCTCATCGAATTGAGGCCGGAGAGACACCTGAAGG TATGTTTATCTTTTTTTCTACCTGGAGAATTCTATTAACCATTGTATAGCTGCCGTGGACCGTATCATTGAACAG TCGGCGTCTGAAATCCTGAAGCTCTTCATCCTCGGAACAGAGTCAATTACACTCCAGTGGTCCCGTGAGCAGGCG TGGCATCTGATCAAGTCTATCGCCCACTCCAAGGATGGAAACCTGTTGTACAACAAAGTCCTCCTCGACGATGTA TTCAAGGACAACGGCGAGGTCACTCTCCGGGCACTAGAGCAAGCAGAGCTTGTCTCCATCGGGACTGACAAAGGA TTCCCACGATACGTCAAACCGGGCAAACCCGTGTATCGCGCGGCTTTCCAACGTCTGGTTGCGAACAAGACCCTG CAGGGCCGCCTTGACTTGTTAATCCTCTCACAGCTCATTAACAACGAGAATTCAAGTATCACGAAGTATGAACAG GAGCTGCAGGTCCTTGGCTCACTGCCAAAGTACCCCTGGGAGCTAACGTCGCGGATCGAGTGGCTTCTGCGCAAA GTTCACGGATCGCAATCGAAGATTCTCAAGTATGAGAGTGAAAGTGCTGCCTTGTCAAAGTCTTTGCAGAAGGAA TATTAA |