Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g94.t1
Gene name
Locationscaffold_01:234024..235201
Strand-
Gene length (bp)1177
Transcript length (bp)1110
Coding sequence length (bp)1110
Protein length (aa) 370

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10288 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 3.0E-08 285 333

GO

GO Term Description Terminal node
GO:0000049 tRNA binding Yes
GO:0034227 tRNA thio-modification Yes
GO:0002098 tRNA wobble uridine modification Yes
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0044238 primary metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0034470 ncRNA processing No
GO:0071704 organic substance metabolic process No
GO:0006399 tRNA metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0009451 RNA modification No
GO:0002097 tRNA wobble base modification No
GO:1901363 heterocyclic compound binding No
GO:0006400 tRNA modification No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0009987 cellular process No
GO:0044237 cellular metabolic process No
GO:0006396 RNA processing No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0008033 tRNA processing No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0003674 molecular_function No
GO:0006807 nitrogen compound metabolic process No
GO:0043412 macromolecule modification No
GO:0003676 nucleic acid binding No
GO:0006725 cellular aromatic compound metabolic process No
GO:0003723 RNA binding No
GO:0005488 binding No
GO:0016070 RNA metabolic process No
GO:0034660 ncRNA metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 43 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g94.t1
MPAKELSKSCMECKDAEFDLIARKRQLCSSCFRRFIAHKVQSRLSVYRAFGLDGPKTQLLLPVSFGVSSSVLLHI
LNTDRQHRLDNGRPLGYDFKILIIEPSTVAATGVPFDKNYEALEKNFPMHTISRIPFHSIFDYVPEVEDIMQEYA
GSKFTDDSTRSNEDRLAAFRASISTPTSRADVDTVLLTRLIVEFAKKSGCESVIWGDSDSRLAAKALAGVAKGRG
ASLTWQVSDGMSPWGVRFEYPLRDLYKAELLQYASVCAELSDIVIPDQPPSENVLTKNLSIDELMLRYVQNQGAK
YPGVMANVARTANKLNPSTSDNAPTCALCASLVGNVQGNSGVTVANQAEDNHSSQFCYGCMRSRPGELC*
Coding >Pro_DTO377G3_2|g94.t1
ATGCCAGCAAAGGAACTGAGCAAGTCATGCATGGAATGCAAGGATGCAGAATTCGACCTCATTGCCCGGAAGAGG
CAGCTTTGCAGCTCCTGCTTTAGGCGCTTCATAGCACACAAAGTTCAGTCGCGCTTGAGTGTCTATAGAGCTTTT
GGCTTGGATGGCCCTAAAACCCAGTTGCTTCTGCCTGTGTCTTTTGGTGTTTCCTCCTCGGTCTTGTTGCATATA
TTGAATACCGATCGACAACATCGCCTGGACAATGGACGCCCGCTGGGATACGACTTCAAGATCCTGATCATCGAA
CCTTCAACTGTTGCGGCTACAGGCGTTCCATTCGATAAGAACTACGAAGCTCTTGAAAAGAATTTCCCGATGCAC
ACTATCAGTCGGATACCTTTTCATAGCATCTTCGACTATGTCCCGGAAGTGGAAGATATCATGCAGGAATATGCG
GGATCAAAATTCACAGATGACAGCACTCGGTCGAATGAAGACCGCTTAGCTGCCTTCCGTGCATCCATTTCCACC
CCTACTTCTAGGGCCGACGTTGACACCGTCTTGCTGACCAGATTGATCGTTGAATTTGCGAAAAAGTCTGGCTGT
GAATCTGTGATTTGGGGTGACTCGGACAGCCGTCTGGCTGCGAAAGCACTTGCGGGTGTCGCCAAGGGACGTGGG
GCTTCCCTCACCTGGCAGGTATCTGACGGCATGTCTCCTTGGGGCGTGCGGTTCGAGTACCCGCTCCGTGATCTG
TATAAGGCTGAGTTACTTCAATATGCGAGCGTCTGTGCCGAGCTCTCTGATATCGTCATACCTGATCAACCGCCC
TCCGAAAATGTCCTTACCAAGAACCTCTCTATTGACGAGTTGATGCTGCGATATGTCCAGAACCAAGGTGCAAAG
TATCCAGGTGTCATGGCGAATGTGGCCAGAACTGCAAACAAGCTGAACCCCTCCACGTCTGATAATGCACCAACG
TGTGCTCTTTGTGCTAGCCTAGTGGGAAATGTTCAGGGTAATTCCGGAGTTACTGTTGCGAATCAGGCAGAGGAT
AACCACAGCTCTCAATTCTGCTACGGATGTATGAGGTCTCGACCAGGGGAGCTTTGCTGA
Transcript >Pro_DTO377G3_2|g94.t1
ATGCCAGCAAAGGAACTGAGCAAGTCATGCATGGAATGCAAGGATGCAGAATTCGACCTCATTGCCCGGAAGAGG
CAGCTTTGCAGCTCCTGCTTTAGGCGCTTCATAGCACACAAAGTTCAGTCGCGCTTGAGTGTCTATAGAGCTTTT
GGCTTGGATGGCCCTAAAACCCAGTTGCTTCTGCCTGTGTCTTTTGGTGTTTCCTCCTCGGTCTTGTTGCATATA
TTGAATACCGATCGACAACATCGCCTGGACAATGGACGCCCGCTGGGATACGACTTCAAGATCCTGATCATCGAA
CCTTCAACTGTTGCGGCTACAGGCGTTCCATTCGATAAGAACTACGAAGCTCTTGAAAAGAATTTCCCGATGCAC
ACTATCAGTCGGATACCTTTTCATAGCATCTTCGACTATGTCCCGGAAGTGGAAGATATCATGCAGGAATATGCG
GGATCAAAATTCACAGATGACAGCACTCGGTCGAATGAAGACCGCTTAGCTGCCTTCCGTGCATCCATTTCCACC
CCTACTTCTAGGGCCGACGTTGACACCGTCTTGCTGACCAGATTGATCGTTGAATTTGCGAAAAAGTCTGGCTGT
GAATCTGTGATTTGGGGTGACTCGGACAGCCGTCTGGCTGCGAAAGCACTTGCGGGTGTCGCCAAGGGACGTGGG
GCTTCCCTCACCTGGCAGGTATCTGACGGCATGTCTCCTTGGGGCGTGCGGTTCGAGTACCCGCTCCGTGATCTG
TATAAGGCTGAGTTACTTCAATATGCGAGCGTCTGTGCCGAGCTCTCTGATATCGTCATACCTGATCAACCGCCC
TCCGAAAATGTCCTTACCAAGAACCTCTCTATTGACGAGTTGATGCTGCGATATGTCCAGAACCAAGGTGCAAAG
TATCCAGGTGTCATGGCGAATGTGGCCAGAACTGCAAACAAGCTGAACCCCTCCACGTCTGATAATGCACCAACG
TGTGCTCTTTGTGCTAGCCTAGTGGGAAATGTTCAGGGTAATTCCGGAGTTACTGTTGCGAATCAGGCAGAGGAT
AACCACAGCTCTCAATTCTGCTACGGATGTATGAGGTCTCGACCAGGGGAGCTTTGCTGA
Gene >Pro_DTO377G3_2|g94.t1
ATGCCAGCAAAGGAACTGAGCAAGTCATGCATGGAATGCAAGGATGCAGAATTCGACCTCATTGCCCGGAAGAGG
CAGCTTTGCAGGTATGCGACAAGTCGACAATCTACAACCCCTCCAGCTCATAGTTTCTGACTTAATTTTTTTCTC
TAGCTCCTGCTTTAGGCGCTTCATAGCACACAAAGTTCAGTCGCGCTTGAGTGTCTATAGAGCTTTTGGCTTGGA
TGGCCCTAAAACCCAGTTGCTTCTGCCTGTGTCTTTTGGTGTTTCCTCCTCGGTCTTGTTGCATATATTGAATAC
CGATCGACAACATCGCCTGGACAATGGACGCCCGCTGGGATACGACTTCAAGATCCTGATCATCGAACCTTCAAC
TGTTGCGGCTACAGGCGTTCCATTCGATAAGAACTACGAAGCTCTTGAAAAGAATTTCCCGATGCACACTATCAG
TCGGATACCTTTTCATAGCATCTTCGACTATGTCCCGGAAGTGGAAGATATCATGCAGGAATATGCGGGATCAAA
ATTCACAGATGACAGCACTCGGTCGAATGAAGACCGCTTAGCTGCCTTCCGTGCATCCATTTCCACCCCTACTTC
TAGGGCCGACGTTGACACCGTCTTGCTGACCAGATTGATCGTTGAATTTGCGAAAAAGTCTGGCTGTGAATCTGT
GATTTGGGGTGACTCGGACAGCCGTCTGGCTGCGAAAGCACTTGCGGGTGTCGCCAAGGGACGTGGGGCTTCCCT
CACCTGGCAGGTATCTGACGGCATGTCTCCTTGGGGCGTGCGGTTCGAGTACCCGCTCCGTGATCTGTATAAGGC
TGAGTTACTTCAATATGCGAGCGTCTGTGCCGAGCTCTCTGATATCGTCATACCTGATCAACCGCCCTCCGAAAA
TGTCCTTACCAAGAACCTCTCTATTGACGAGTTGATGCTGCGATATGTCCAGAACCAAGGTGCAAAGTATCCAGG
TGTCATGGCGAATGTGGCCAGAACTGCAAACAAGCTGAACCCCTCCACGTCTGATAATGCACCAACGTGTGCTCT
TTGTGCTAGCCTAGTGGGAAATGTTCAGGGTAATTCCGGAGTTACTGTTGCGAATCAGGCAGAGGATAACCACAG
CTCTCAATTCTGCTACGGATGTATGAGGTCTCGACCAGGGGAGCTTTGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail