Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g94.t1
Gene name
Location	scaffold_01:234024..235201
Strand	-
Gene length (bp)	1177
Transcript length (bp)	1110
Coding sequence length (bp)	1110
Protein length (aa)	370

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10288	CTU2	Cytoplasmic tRNA 2-thiolation protein 2	3.0E-08	285	333

GO

GO Term	Description	Terminal node
GO:0000049	tRNA binding	Yes
GO:0034227	tRNA thio-modification	Yes
GO:0002098	tRNA wobble uridine modification	Yes
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0044238	primary metabolic process	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0034470	ncRNA processing	No
GO:0071704	organic substance metabolic process	No
GO:0006399	tRNA metabolic process	No
GO:0097159	organic cyclic compound binding	No
GO:0009451	RNA modification	No
GO:0002097	tRNA wobble base modification	No
GO:1901363	heterocyclic compound binding	No
GO:0006400	tRNA modification	No
GO:0090304	nucleic acid metabolic process	No
GO:0046483	heterocycle metabolic process	No
GO:0009987	cellular process	No
GO:0044237	cellular metabolic process	No
GO:0006396	RNA processing	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0008033	tRNA processing	No
GO:0008152	metabolic process	No
GO:0008150	biological_process	No
GO:0003674	molecular_function	No
GO:0006807	nitrogen compound metabolic process	No
GO:0043412	macromolecule modification	No
GO:0003676	nucleic acid binding	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0003723	RNA binding	No
GO:0005488	binding	No
GO:0016070	RNA metabolic process	No
GO:0034660	ncRNA metabolic process	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 43	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g94.t1 MPAKELSKSCMECKDAEFDLIARKRQLCSSCFRRFIAHKVQSRLSVYRAFGLDGPKTQLLLPVSFGVSSSVLLHI LNTDRQHRLDNGRPLGYDFKILIIEPSTVAATGVPFDKNYEALEKNFPMHTISRIPFHSIFDYVPEVEDIMQEYA GSKFTDDSTRSNEDRLAAFRASISTPTSRADVDTVLLTRLIVEFAKKSGCESVIWGDSDSRLAAKALAGVAKGRG ASLTWQVSDGMSPWGVRFEYPLRDLYKAELLQYASVCAELSDIVIPDQPPSENVLTKNLSIDELMLRYVQNQGAK YPGVMANVARTANKLNPSTSDNAPTCALCASLVGNVQGNSGVTVANQAEDNHSSQFCYGCMRSRPGELC*
Coding	>Pro_DTO377G3_2\|g94.t1 ATGCCAGCAAAGGAACTGAGCAAGTCATGCATGGAATGCAAGGATGCAGAATTCGACCTCATTGCCCGGAAGAGG CAGCTTTGCAGCTCCTGCTTTAGGCGCTTCATAGCACACAAAGTTCAGTCGCGCTTGAGTGTCTATAGAGCTTTT GGCTTGGATGGCCCTAAAACCCAGTTGCTTCTGCCTGTGTCTTTTGGTGTTTCCTCCTCGGTCTTGTTGCATATA TTGAATACCGATCGACAACATCGCCTGGACAATGGACGCCCGCTGGGATACGACTTCAAGATCCTGATCATCGAA CCTTCAACTGTTGCGGCTACAGGCGTTCCATTCGATAAGAACTACGAAGCTCTTGAAAAGAATTTCCCGATGCAC ACTATCAGTCGGATACCTTTTCATAGCATCTTCGACTATGTCCCGGAAGTGGAAGATATCATGCAGGAATATGCG GGATCAAAATTCACAGATGACAGCACTCGGTCGAATGAAGACCGCTTAGCTGCCTTCCGTGCATCCATTTCCACC CCTACTTCTAGGGCCGACGTTGACACCGTCTTGCTGACCAGATTGATCGTTGAATTTGCGAAAAAGTCTGGCTGT GAATCTGTGATTTGGGGTGACTCGGACAGCCGTCTGGCTGCGAAAGCACTTGCGGGTGTCGCCAAGGGACGTGGG GCTTCCCTCACCTGGCAGGTATCTGACGGCATGTCTCCTTGGGGCGTGCGGTTCGAGTACCCGCTCCGTGATCTG TATAAGGCTGAGTTACTTCAATATGCGAGCGTCTGTGCCGAGCTCTCTGATATCGTCATACCTGATCAACCGCCC TCCGAAAATGTCCTTACCAAGAACCTCTCTATTGACGAGTTGATGCTGCGATATGTCCAGAACCAAGGTGCAAAG TATCCAGGTGTCATGGCGAATGTGGCCAGAACTGCAAACAAGCTGAACCCCTCCACGTCTGATAATGCACCAACG TGTGCTCTTTGTGCTAGCCTAGTGGGAAATGTTCAGGGTAATTCCGGAGTTACTGTTGCGAATCAGGCAGAGGAT AACCACAGCTCTCAATTCTGCTACGGATGTATGAGGTCTCGACCAGGGGAGCTTTGCTGA
Transcript	>Pro_DTO377G3_2\|g94.t1 ATGCCAGCAAAGGAACTGAGCAAGTCATGCATGGAATGCAAGGATGCAGAATTCGACCTCATTGCCCGGAAGAGG CAGCTTTGCAGCTCCTGCTTTAGGCGCTTCATAGCACACAAAGTTCAGTCGCGCTTGAGTGTCTATAGAGCTTTT GGCTTGGATGGCCCTAAAACCCAGTTGCTTCTGCCTGTGTCTTTTGGTGTTTCCTCCTCGGTCTTGTTGCATATA TTGAATACCGATCGACAACATCGCCTGGACAATGGACGCCCGCTGGGATACGACTTCAAGATCCTGATCATCGAA CCTTCAACTGTTGCGGCTACAGGCGTTCCATTCGATAAGAACTACGAAGCTCTTGAAAAGAATTTCCCGATGCAC ACTATCAGTCGGATACCTTTTCATAGCATCTTCGACTATGTCCCGGAAGTGGAAGATATCATGCAGGAATATGCG GGATCAAAATTCACAGATGACAGCACTCGGTCGAATGAAGACCGCTTAGCTGCCTTCCGTGCATCCATTTCCACC CCTACTTCTAGGGCCGACGTTGACACCGTCTTGCTGACCAGATTGATCGTTGAATTTGCGAAAAAGTCTGGCTGT GAATCTGTGATTTGGGGTGACTCGGACAGCCGTCTGGCTGCGAAAGCACTTGCGGGTGTCGCCAAGGGACGTGGG GCTTCCCTCACCTGGCAGGTATCTGACGGCATGTCTCCTTGGGGCGTGCGGTTCGAGTACCCGCTCCGTGATCTG TATAAGGCTGAGTTACTTCAATATGCGAGCGTCTGTGCCGAGCTCTCTGATATCGTCATACCTGATCAACCGCCC TCCGAAAATGTCCTTACCAAGAACCTCTCTATTGACGAGTTGATGCTGCGATATGTCCAGAACCAAGGTGCAAAG TATCCAGGTGTCATGGCGAATGTGGCCAGAACTGCAAACAAGCTGAACCCCTCCACGTCTGATAATGCACCAACG TGTGCTCTTTGTGCTAGCCTAGTGGGAAATGTTCAGGGTAATTCCGGAGTTACTGTTGCGAATCAGGCAGAGGAT AACCACAGCTCTCAATTCTGCTACGGATGTATGAGGTCTCGACCAGGGGAGCTTTGCTGA
Gene	>Pro_DTO377G3_2\|g94.t1 ATGCCAGCAAAGGAACTGAGCAAGTCATGCATGGAATGCAAGGATGCAGAATTCGACCTCATTGCCCGGAAGAGG CAGCTTTGCAGGTATGCGACAAGTCGACAATCTACAACCCCTCCAGCTCATAGTTTCTGACTTAATTTTTTTCTC TAGCTCCTGCTTTAGGCGCTTCATAGCACACAAAGTTCAGTCGCGCTTGAGTGTCTATAGAGCTTTTGGCTTGGA TGGCCCTAAAACCCAGTTGCTTCTGCCTGTGTCTTTTGGTGTTTCCTCCTCGGTCTTGTTGCATATATTGAATAC CGATCGACAACATCGCCTGGACAATGGACGCCCGCTGGGATACGACTTCAAGATCCTGATCATCGAACCTTCAAC TGTTGCGGCTACAGGCGTTCCATTCGATAAGAACTACGAAGCTCTTGAAAAGAATTTCCCGATGCACACTATCAG TCGGATACCTTTTCATAGCATCTTCGACTATGTCCCGGAAGTGGAAGATATCATGCAGGAATATGCGGGATCAAA ATTCACAGATGACAGCACTCGGTCGAATGAAGACCGCTTAGCTGCCTTCCGTGCATCCATTTCCACCCCTACTTC TAGGGCCGACGTTGACACCGTCTTGCTGACCAGATTGATCGTTGAATTTGCGAAAAAGTCTGGCTGTGAATCTGT GATTTGGGGTGACTCGGACAGCCGTCTGGCTGCGAAAGCACTTGCGGGTGTCGCCAAGGGACGTGGGGCTTCCCT CACCTGGCAGGTATCTGACGGCATGTCTCCTTGGGGCGTGCGGTTCGAGTACCCGCTCCGTGATCTGTATAAGGC TGAGTTACTTCAATATGCGAGCGTCTGTGCCGAGCTCTCTGATATCGTCATACCTGATCAACCGCCCTCCGAAAA TGTCCTTACCAAGAACCTCTCTATTGACGAGTTGATGCTGCGATATGTCCAGAACCAAGGTGCAAAGTATCCAGG TGTCATGGCGAATGTGGCCAGAACTGCAAACAAGCTGAACCCCTCCACGTCTGATAATGCACCAACGTGTGCTCT TTGTGCTAGCCTAGTGGGAAATGTTCAGGGTAATTCCGGAGTTACTGTTGCGAATCAGGCAGAGGATAACCACAG CTCTCAATTCTGCTACGGATGTATGAGGTCTCGACCAGGGGAGCTTTGCTGA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences