© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g939.t1 |
| Gene name | |
| Location | scaffold_01:2491398..2492401 |
| Strand | - |
| Gene length (bp) | 1003 |
| Transcript length (bp) | 948 |
| Coding sequence length (bp) | 948 |
| Protein length (aa) | 316 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03446 | NAD_binding_2 | NAD binding domain of 6-phosphogluconate dehydrogenase | 1.1E-28 | 6 | 162 |
| PF14833 | NAD_binding_11 | NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase | 5.2E-08 | 182 | 301 |
| PF03807 | F420_oxidored | NADP oxidoreductase coenzyme F420-dependent | 5.8E-07 | 5 | 104 |
| PF01488 | Shikimate_DH | Shikimate / quinate 5-dehydrogenase | 6.8E-06 | 4 | 76 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051287 | NAD binding | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0050662 | coenzyme binding | No |
| GO:0048037 | cofactor binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g939.t1 MAGPRVAWIGLGNIGRGMSQNIAEKGPQTGPLLLYNRTTARATAHASKLPNAKAVTTLPEAVNQSDLIFTCVGDD AALDSIVTAILSDPTIPQDLSDKIFIDCSTVHPDTSRQTEAAFNERGAGFVACPVFGAPNMADAGQLIVVPAGKR AAIEKVRPFFDGVVSKKTIDLSSGRGGDIDVGRASTLKLLGNTFILNTVGVLAEALVAAEASGLGVEPLQEWLGL FAPGPFANYAQRMVGGDYCTRDEPLFAVDLARKDLRHAYGIAKEGGLRMKNVEVMDGLLEVVKEVRGDKGDVAAV YGAARKGAGMEFGNQ* |
| Coding | >Pro_DTO377G3_2|g939.t1 ATGGCAGGGCCTCGAGTCGCATGGATAGGTCTCGGCAACATCGGCCGAGGCATGAGCCAAAACATCGCCGAAAAA GGACCCCAAACCGGCCCCCTCCTCCTCTACAACCGCACAACCGCACGAGCAACCGCCCACGCCTCGAAACTCCCA AACGCCAAAGCCGTAACTACCCTCCCGGAAGCAGTAAACCAATCCGACCTGATCTTCACCTGCGTCGGCGACGAC GCCGCCCTGGACTCAATCGTCACGGCAATCCTATCGGACCCTACAATCCCGCAAGACCTGTCCGACAAGATCTTC ATCGATTGCTCGACCGTGCACCCGGATACATCGCGACAAACCGAGGCCGCCTTCAATGAGCGGGGAGCGGGGTTC GTCGCGTGTCCGGTCTTCGGGGCACCGAATATGGCAGATGCGGGACAGCTTATCGTCGTTCCGGCTGGGAAGCGT GCGGCAATTGAGAAAGTGCGACCGTTTTTCGACGGTGTCGTGTCTAAGAAGACGATTGATCTTTCGTCTGGGAGG GGAGGTGATATAGATGTTGGACGGGCGTCGACGCTGAAATTACTCGGTAACACGTTCATTCTCAATACGGTTGGT GTTCTTGCTGAGGCCCTTGTTGCCGCTGAGGCGTCTGGGCTGGGAGTTGAGCCGCTGCAAGAATGGCTTGGGCTT TTTGCGCCGGGCCCGTTTGCTAATTATGCGCAGAGGATGGTGGGCGGGGATTATTGTACCCGGGACGAGCCGCTC TTTGCAGTTGATCTTGCTAGGAAGGATCTGAGACATGCTTATGGGATTGCGAAGGAGGGAGGACTGAGGATGAAA AACGTCGAGGTTATGGATGGGCTTCTAGAGGTCGTTAAGGAGGTTAGGGGGGACAAGGGAGATGTTGCTGCTGTT TACGGGGCGGCTAGAAAGGGAGCTGGGATGGAATTCGGGAATCAATGA |
| Transcript | >Pro_DTO377G3_2|g939.t1 ATGGCAGGGCCTCGAGTCGCATGGATAGGTCTCGGCAACATCGGCCGAGGCATGAGCCAAAACATCGCCGAAAAA GGACCCCAAACCGGCCCCCTCCTCCTCTACAACCGCACAACCGCACGAGCAACCGCCCACGCCTCGAAACTCCCA AACGCCAAAGCCGTAACTACCCTCCCGGAAGCAGTAAACCAATCCGACCTGATCTTCACCTGCGTCGGCGACGAC GCCGCCCTGGACTCAATCGTCACGGCAATCCTATCGGACCCTACAATCCCGCAAGACCTGTCCGACAAGATCTTC ATCGATTGCTCGACCGTGCACCCGGATACATCGCGACAAACCGAGGCCGCCTTCAATGAGCGGGGAGCGGGGTTC GTCGCGTGTCCGGTCTTCGGGGCACCGAATATGGCAGATGCGGGACAGCTTATCGTCGTTCCGGCTGGGAAGCGT GCGGCAATTGAGAAAGTGCGACCGTTTTTCGACGGTGTCGTGTCTAAGAAGACGATTGATCTTTCGTCTGGGAGG GGAGGTGATATAGATGTTGGACGGGCGTCGACGCTGAAATTACTCGGTAACACGTTCATTCTCAATACGGTTGGT GTTCTTGCTGAGGCCCTTGTTGCCGCTGAGGCGTCTGGGCTGGGAGTTGAGCCGCTGCAAGAATGGCTTGGGCTT TTTGCGCCGGGCCCGTTTGCTAATTATGCGCAGAGGATGGTGGGCGGGGATTATTGTACCCGGGACGAGCCGCTC TTTGCAGTTGATCTTGCTAGGAAGGATCTGAGACATGCTTATGGGATTGCGAAGGAGGGAGGACTGAGGATGAAA AACGTCGAGGTTATGGATGGGCTTCTAGAGGTCGTTAAGGAGGTTAGGGGGGACAAGGGAGATGTTGCTGCTGTT TACGGGGCGGCTAGAAAGGGAGCTGGGATGGAATTCGGGAATCAATGA |
| Gene | >Pro_DTO377G3_2|g939.t1 ATGGCAGGGCCTCGAGTCGCATGGATAGGTCTCGGCAACATCGGCCGAGTAAGCCAATCCGCACCGCAACCAAAA AGCAACCTCATCTAATCCGCAATCGCAGGGCATGAGCCAAAACATCGCCGAAAAAGGACCCCAAACCGGCCCCCT CCTCCTCTACAACCGCACAACCGCACGAGCAACCGCCCACGCCTCGAAACTCCCAAACGCCAAAGCCGTAACTAC CCTCCCGGAAGCAGTAAACCAATCCGACCTGATCTTCACCTGCGTCGGCGACGACGCCGCCCTGGACTCAATCGT CACGGCAATCCTATCGGACCCTACAATCCCGCAAGACCTGTCCGACAAGATCTTCATCGATTGCTCGACCGTGCA CCCGGATACATCGCGACAAACCGAGGCCGCCTTCAATGAGCGGGGAGCGGGGTTCGTCGCGTGTCCGGTCTTCGG GGCACCGAATATGGCAGATGCGGGACAGCTTATCGTCGTTCCGGCTGGGAAGCGTGCGGCAATTGAGAAAGTGCG ACCGTTTTTCGACGGTGTCGTGTCTAAGAAGACGATTGATCTTTCGTCTGGGAGGGGAGGTGATATAGATGTTGG ACGGGCGTCGACGCTGAAATTACTCGGTAACACGTTCATTCTCAATACGGTTGGTGTTCTTGCTGAGGCCCTTGT TGCCGCTGAGGCGTCTGGGCTGGGAGTTGAGCCGCTGCAAGAATGGCTTGGGCTTTTTGCGCCGGGCCCGTTTGC TAATTATGCGCAGAGGATGGTGGGCGGGGATTATTGTACCCGGGACGAGCCGCTCTTTGCAGTTGATCTTGCTAG GAAGGATCTGAGACATGCTTATGGGATTGCGAAGGAGGGAGGACTGAGGATGAAAAACGTCGAGGTTATGGATGG GCTTCTAGAGGTCGTTAAGGAGGTTAGGGGGGACAAGGGAGATGTTGCTGCTGTTTACGGGGCGGCTAGAAAGGG AGCTGGGATGGAATTCGGGAATCAATGA |