© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9386.t1 |
| Gene name | |
| Location | scaffold_47:13522..16374 |
| Strand | + |
| Gene length (bp) | 2852 |
| Transcript length (bp) | 2454 |
| Coding sequence length (bp) | 2454 |
| Protein length (aa) | 818 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00806 | PUF | Pumilio-family RNA binding repeat | 8.2E-01 | 455 | 481 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 2.3E-07 | 484 | 517 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 2.5E-10 | 522 | 554 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 1.9E-01 | 562 | 575 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 2.1E-03 | 599 | 630 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 2.6E-01 | 636 | 663 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 1.4E+01 | 670 | 687 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 4.1E-03 | 715 | 744 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 31.01 | 18.60 | 43.42 |
| 5d_25C | Five days - 25 degrees Celsius | 11.68 | 5.92 | 17.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 12.42 | 6.08 | 18.75 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.05 | 1.24 | 6.87 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.19 | 4.70 | 15.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 5.09 | 2.05 | 8.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.886798 | no |
| 5d_25C | 7d_15C | 0.719023 | no |
| 5d_25C | 7d_30C | 0.006000 | yes |
| 5d_25C | 10d_25C | 0.001278 | yes |
| 7d_25C | 7d_15C | 0.581978 | no |
| 7d_25C | 7d_30C | 0.001804 | yes |
| 7d_25C | 10d_25C | 0.001278 | yes |
| 7d_15C | 7d_30C | 0.023923 | yes |
| 7d_15C | 10d_25C | 0.006742 | yes |
| 7d_30C | 10d_25C | 0.615177 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9386.t1 MSTLSGPSTLGRMGNGGCFTSNDTIDVRNLSFGHDSSNPQNSIAHYGSSDTAETSRHGMLQSLSGEGAEHSSSKK LDHIKVEPLNGQTSDLDRILAKISPKTQPLSHSETDRSSVSSQITPVTTVSTLTLNKAPNPCPQEDRTVELLRLR QELLAANSKIALQEQELAQTRVIKHTLDQALGPSSEADFGSREITEQTISHLQNAFNASSSAFSHFQDAWSAQDD SQSDVSDPLSTGAYNRSRALWAQNEAATDREYGDSLSGTSSSTSQEPNRFWGVSNVYPPFPGPPSLQSQRPHSGS SASPCGFYSRPIGEQMLCPSGPITGARRCITQNSRGGSLFPIQSTPWGEFASGSSSEHTVKSPASPKRPPSAFQQ IGLYSVPSYPPRPIGSPLSPTATEFTGTNTNETTWTNSMSGNSIQTYVSPLEPLNYRRLLDKNVSCDWKYIVDKI ICNNDQQASIFLQQKLKVGTTEQKYDIIESIVHQAYPLMVNRFGNFLIQRCFEHGTPEQVVAIANAIRGNTLNLS MDAFGCHVVQKAFDCVSEEHKAIMVHELLRRIPETVVHRYACHVWQKLFELRWSGEPPQVMAKVNDALRGMWHEV ALGETGSLVVQNIFENCVEEEKRPAIEEVLAKIDVLAHGQFGNWCIQHICEHGAPHDKSRAVEHVLRWSVDYSMD QFASKIMEKCLKIGGTEFMDHYLSRVCTGRSDRPRMPLIDIAGDQYGNYLIQWILMNAAPHQRELVASHIRKHMV SLRGSKFGSRGAMLCCNPSHATRPGPGAGMQIGRFNNFDADKFTTTSQSGGRFGRGHQWGPHYAPLR* |
| Coding | >Pro_DTO377G3_2|g9386.t1 ATGTCTACCCTAAGCGGACCTTCAACACTTGGTCGAATGGGGAATGGGGGATGTTTTACCTCCAATGATACCATT GATGTGCGAAATCTTTCTTTTGGACACGATTCCTCGAACCCTCAGAACTCGATTGCTCATTACGGTTCTTCCGAT ACGGCTGAAACATCCCGGCATGGAATGTTGCAGTCCTTGTCTGGTGAAGGGGCTGAGCACTCGTCGAGCAAGAAG CTAGATCATATCAAAGTTGAACCTTTGAACGGACAAACATCGGATCTTGACAGAATACTGGCCAAGATTTCCCCC AAAACACAACCCCTTTCACATTCTGAAACCGATCGCTCTTCTGTTTCGTCCCAGATCACTCCAGTTACAACGGTG TCAACTTTAACCCTCAACAAAGCCCCCAATCCTTGCCCCCAGGAAGACAGAACGGTGGAGCTCCTTCGTCTTAGG CAGGAACTCCTTGCTGCAAATTCCAAGATTGCTCTGCAGGAGCAGGAGCTTGCCCAAACCCGTGTGATAAAACAT ACCTTGGATCAAGCCCTTGGTCCGTCATCAGAGGCTGATTTCGGCAGCCGCGAAATTACAGAGCAGACCATTAGT CACCTGCAGAATGCATTTAATGCATCGAGCTCTGCATTCTCTCACTTTCAAGATGCATGGAGTGCCCAAGACGAT TCGCAGTCTGATGTCTCGGATCCATTGTCTACAGGAGCTTACAATAGATCTCGCGCACTCTGGGCCCAGAATGAG GCTGCCACAGACAGAGAATATGGAGATAGCCTTTCAGGCACCAGCAGCTCGACAAGCCAGGAGCCAAATCGGTTC TGGGGAGTCTCCAATGTGTATCCTCCGTTTCCCGGCCCACCATCTCTACAATCGCAAAGACCACACTCGGGGTCC TCAGCTAGTCCATGTGGATTCTACTCACGTCCCATTGGTGAACAGATGTTGTGTCCTTCAGGACCCATAACTGGG GCTCGTCGCTGTATCACTCAAAACAGTAGGGGTGGATCTCTATTCCCAATTCAGTCTACTCCTTGGGGTGAATTT GCTTCTGGGTCCTCCAGTGAGCATACCGTCAAGTCACCTGCTTCGCCGAAGAGACCCCCTAGCGCCTTTCAGCAG ATCGGGCTTTACTCTGTGCCCTCTTACCCCCCTCGACCGATTGGCAGCCCCCTTTCACCTACTGCTACCGAGTTT ACGGGCACCAACACGAATGAAACCACATGGACCAACTCGATGAGCGGCAATTCCATCCAGACGTACGTGTCCCCA CTCGAGCCACTCAACTATCGACGCCTGCTCGACAAGAATGTGTCGTGTGATTGGAAGTACATTGTAGACAAGATC ATCTGTAACAATGACCAACAAGCTTCAATTTTCTTACAGCAAAAGCTCAAGGTCGGCACAACCGAGCAAAAATAT GACATTATCGAGTCAATTGTGCACCAAGCCTACCCACTCATGGTTAACCGCTTTGGAAACTTCCTCATACAACGC TGCTTTGAACATGGAACTCCGGAGCAAGTCGTCGCTATCGCGAATGCAATCAGAGGAAATACGCTGAACCTCAGC ATGGATGCATTTGGCTGCCATGTCGTCCAAAAGGCGTTTGACTGTGTTTCAGAAGAGCATAAAGCTATCATGGTA CATGAACTTCTTCGCAGAATTCCTGAGACGGTGGTCCATCGATATGCGTGCCACGTTTGGCAGAAACTCTTCGAG CTCCGGTGGAGTGGTGAGCCTCCGCAGGTGATGGCCAAAGTAAATGACGCACTACGTGGAATGTGGCACGAGGTT GCTCTTGGAGAGACAGGAAGTCTGGTCGTCCAAAATATCTTTGAGAACTGTGTGGAGGAGGAAAAGCGACCGGCA ATCGAAGAAGTACTGGCGAAGATCGATGTACTCGCTCATGGTCAATTCGGGAATTGGTGCATCCAACACATCTGC GAGCACGGTGCTCCCCACGACAAGAGCCGTGCTGTTGAGCATGTTCTTCGTTGGTCTGTGGATTACAGCATGGAT CAGTTCGCGTCTAAGATTATGGAAAAATGCCTCAAGATTGGCGGCACAGAGTTTATGGATCATTATCTCTCTCGT GTCTGCACTGGCCGATCTGACCGACCTCGCATGCCATTGATCGACATAGCGGGTGACCAGTATGGTAACTATCTC ATCCAATGGATTTTGATGAACGCCGCACCTCATCAACGAGAGCTCGTGGCGAGCCACATTCGGAAACACATGGTC TCCCTTCGTGGCTCTAAATTTGGCTCTCGTGGGGCAATGCTTTGCTGCAACCCGTCTCATGCTACACGCCCTGGT CCTGGGGCTGGAATGCAAATTGGCCGTTTCAACAATTTCGACGCAGACAAATTTACGACCACGAGCCAATCCGGT GGTCGTTTTGGCCGGGGACATCAATGGGGACCCCATTATGCGCCACTTCGTTGA |
| Transcript | >Pro_DTO377G3_2|g9386.t1 ATGTCTACCCTAAGCGGACCTTCAACACTTGGTCGAATGGGGAATGGGGGATGTTTTACCTCCAATGATACCATT GATGTGCGAAATCTTTCTTTTGGACACGATTCCTCGAACCCTCAGAACTCGATTGCTCATTACGGTTCTTCCGAT ACGGCTGAAACATCCCGGCATGGAATGTTGCAGTCCTTGTCTGGTGAAGGGGCTGAGCACTCGTCGAGCAAGAAG CTAGATCATATCAAAGTTGAACCTTTGAACGGACAAACATCGGATCTTGACAGAATACTGGCCAAGATTTCCCCC AAAACACAACCCCTTTCACATTCTGAAACCGATCGCTCTTCTGTTTCGTCCCAGATCACTCCAGTTACAACGGTG TCAACTTTAACCCTCAACAAAGCCCCCAATCCTTGCCCCCAGGAAGACAGAACGGTGGAGCTCCTTCGTCTTAGG CAGGAACTCCTTGCTGCAAATTCCAAGATTGCTCTGCAGGAGCAGGAGCTTGCCCAAACCCGTGTGATAAAACAT ACCTTGGATCAAGCCCTTGGTCCGTCATCAGAGGCTGATTTCGGCAGCCGCGAAATTACAGAGCAGACCATTAGT CACCTGCAGAATGCATTTAATGCATCGAGCTCTGCATTCTCTCACTTTCAAGATGCATGGAGTGCCCAAGACGAT TCGCAGTCTGATGTCTCGGATCCATTGTCTACAGGAGCTTACAATAGATCTCGCGCACTCTGGGCCCAGAATGAG GCTGCCACAGACAGAGAATATGGAGATAGCCTTTCAGGCACCAGCAGCTCGACAAGCCAGGAGCCAAATCGGTTC TGGGGAGTCTCCAATGTGTATCCTCCGTTTCCCGGCCCACCATCTCTACAATCGCAAAGACCACACTCGGGGTCC TCAGCTAGTCCATGTGGATTCTACTCACGTCCCATTGGTGAACAGATGTTGTGTCCTTCAGGACCCATAACTGGG GCTCGTCGCTGTATCACTCAAAACAGTAGGGGTGGATCTCTATTCCCAATTCAGTCTACTCCTTGGGGTGAATTT GCTTCTGGGTCCTCCAGTGAGCATACCGTCAAGTCACCTGCTTCGCCGAAGAGACCCCCTAGCGCCTTTCAGCAG ATCGGGCTTTACTCTGTGCCCTCTTACCCCCCTCGACCGATTGGCAGCCCCCTTTCACCTACTGCTACCGAGTTT ACGGGCACCAACACGAATGAAACCACATGGACCAACTCGATGAGCGGCAATTCCATCCAGACGTACGTGTCCCCA CTCGAGCCACTCAACTATCGACGCCTGCTCGACAAGAATGTGTCGTGTGATTGGAAGTACATTGTAGACAAGATC ATCTGTAACAATGACCAACAAGCTTCAATTTTCTTACAGCAAAAGCTCAAGGTCGGCACAACCGAGCAAAAATAT GACATTATCGAGTCAATTGTGCACCAAGCCTACCCACTCATGGTTAACCGCTTTGGAAACTTCCTCATACAACGC TGCTTTGAACATGGAACTCCGGAGCAAGTCGTCGCTATCGCGAATGCAATCAGAGGAAATACGCTGAACCTCAGC ATGGATGCATTTGGCTGCCATGTCGTCCAAAAGGCGTTTGACTGTGTTTCAGAAGAGCATAAAGCTATCATGGTA CATGAACTTCTTCGCAGAATTCCTGAGACGGTGGTCCATCGATATGCGTGCCACGTTTGGCAGAAACTCTTCGAG CTCCGGTGGAGTGGTGAGCCTCCGCAGGTGATGGCCAAAGTAAATGACGCACTACGTGGAATGTGGCACGAGGTT GCTCTTGGAGAGACAGGAAGTCTGGTCGTCCAAAATATCTTTGAGAACTGTGTGGAGGAGGAAAAGCGACCGGCA ATCGAAGAAGTACTGGCGAAGATCGATGTACTCGCTCATGGTCAATTCGGGAATTGGTGCATCCAACACATCTGC GAGCACGGTGCTCCCCACGACAAGAGCCGTGCTGTTGAGCATGTTCTTCGTTGGTCTGTGGATTACAGCATGGAT CAGTTCGCGTCTAAGATTATGGAAAAATGCCTCAAGATTGGCGGCACAGAGTTTATGGATCATTATCTCTCTCGT GTCTGCACTGGCCGATCTGACCGACCTCGCATGCCATTGATCGACATAGCGGGTGACCAGTATGGTAACTATCTC ATCCAATGGATTTTGATGAACGCCGCACCTCATCAACGAGAGCTCGTGGCGAGCCACATTCGGAAACACATGGTC TCCCTTCGTGGCTCTAAATTTGGCTCTCGTGGGGCAATGCTTTGCTGCAACCCGTCTCATGCTACACGCCCTGGT CCTGGGGCTGGAATGCAAATTGGCCGTTTCAACAATTTCGACGCAGACAAATTTACGACCACGAGCCAATCCGGT GGTCGTTTTGGCCGGGGACATCAATGGGGACCCCATTATGCGCCACTTCGTTGA |
| Gene | >Pro_DTO377G3_2|g9386.t1 ATGTCTACCCTAAGCGGACCTTCAACACTTGGTCGAATGGGGAATGGGGGATGTTTTACCTCCAATGATACCATT GATGTGCGAAATCTTTCTTTTGGACACGATTCCTCGGTATGCTTCTCGGAAGACAGCTTTGAATCGATTCTCCAG CATGCTAATCACATTGGTCGCGGCAGAACCCTCAGAACTCGATTGCTCATTACGGTTCTTCCGATACGGCTGAAA CATCCCGGCATGGAATGTTGCAGTCCTTGTCTGGTGAAGGGGCTGAGCACTCGTCGAGCAAGGTATGTGTTTCCT CTGGTGTTGACTCATGCGTTTGGGTGTCTGTGATCTCACAACCCTAGAAGCAGAAGCTAGATCATATCAAAGTTG AACCTTTGAACGGACAAACATCGGATCTTGACAGAATACTGGCCAAGATTTCCCCCAAAACACAACCCCTTTCAC ATTCTGAAACCGATCGCTCTTCTGTTTCGTCCCAGATCACTCCAGTTACAACGGTGTCAACTTTAACCCTCAACA AAGCCCCCAATCCTTGCCCCCAGGAAGACAGAACGGTGGAGCTCCTTCGTCTTAGGCAGGAACTCCTTGCTGCAA ATTCCAAGATTGCTCTGCAGGAGCAGGAGCTTGCCCAAACCCGTGTGATAAAACATACCTTGGATCAAGCCCTTG GTCCGTCATCAGAGGCTGATTTCGGCAGCCGCGAAATTACAGAGCAGACCATTAGTCACCTGCAGAATGCATTTA ATGCATCGAGCTCTGCATTCTCTCACTTTCAAGATGCATGGAGTGCCCAAGACGATTCGCAGTCTGATGTCTCGG ATCCATTGTCTACAGGAGCTTACAATAGATCTCGCGCACTCTGGGCCCAGAATGAGGCTGCCACAGACAGAGAAT ATGGAGATAGCCTTTCAGGCACCAGCAGCTCGACAAGCCAGGAGCCAAATCGGTTCTGGGGAGTCTCCAATGTGT ATCCTCCGTTTCCCGGCCCACCATCTCTACAATCGCAAAGACCACACTCGGGGTCCTCAGCTAGTCCATGTGGAT TCTACTCACGTCCCATTGGTGAACAGATGTTGTGTCCTTCAGGACCCATAACTGGGGCTCGTCGCTGTATCACTC AAAACAGTAGGGGTGGATCTCTATTCCCAATTCAGTCTACTCCTTGGGGTGAATTTGCTTCTGGGTCCTCCAGTG AGCATACCGTCAAGTCACCTGCTTCGCCGAAGAGACCCCCTAGCGCCTTTCAGCAGATCGGGCTTTACTCTGTGC CCTCTTACCCCCCTCGACCGATTGGCAGCCCCCTTTCACCTACTGCTACCGAGTTTACGGGCACCAACACGAATG AAACCACATGGACCAACTCGGTAAGTAATAACCATGGGCATCTTGTTTAAATTCATTCTAACTCTTGTCAGATGA GCGGCAATTCCATCCAGACGTACGTGTCCCCACTCGAGCCACTCAACTATCGACGCCTGCTCGACAAGAATGTGT CGTGTGATTGGAAGTACATTGTAGACAAGATCATCTGTAACAATGACCAACAAGCTTCAATTTTCTTACAGCAAA AGCTCAAGGTCGGCACAACCGAGCAAAAATATGACATTATCGAGTCAATTGTGCACCAAGCCTACCCACTCATGG TTAACCGCTTTGGAAACTTCCTCATACAACGCTGCTTTGAACATGGAACTCCGGAGCAAGTCGTCGCTATCGCGA ATGCAATCAGAGGAAATACGCTGAACCTCAGCATGGATGCATTTGGCTGCCATGTCGTCCAAAAGGCGTTTGACT GTGTTTCAGAAGAGCATAAAGCTATCATGGTACATGAACTTCTTCGCAGAATTCCTGAGACGGTGGTCCATCGAT ATGCGTGCCACGTTTGGCAGAAACTCTTCGAGCTCCGGTGGAGTGGTGAGCCTCCGCAGGTGATGGCCAAAGTAA ATGACGCACTACGTGGAATGTGGCACGAGGTTGCTCTTGGAGAGACAGGAAGTCTGGTCGTCCAAAATATCTTTG AGAACTGTGTGGAGGAGGAAAAGGTGAGACTCCCCGTCAGATACCATACGCATCAAGCCCCTTGTTTTCGCTGTC CTACTTCTCTGCTGGTCCGTTATGTTGAGTATGCCAATGCTAATTCATTGCAGCGACCGGCAATCGAAGAAGTAC TGGCGAAGATCGATGTACTCGCTCATGGTCAATTCGGGAATTGGTGCATCCAACACATCTGCGAGCACGGTGCTC CCCACGACAAGAGCCGTGCTGTTGAGCATGTTCTTCGTTGGTCTGTGGATTACAGCATGGATCAGTTCGCGTCTA AGATTATGGAAAAATGCCTCAAGATTGGCGGCACAGAGTTTATGGATCATTATCTCTCTCGTGTCTGCACTGGCC GATCTGACCGACCTCGCATGCCATTGATCGACAGTAAGTTGCTCAGGATTTAACGCCGTGAGAACGTACTAATTT TTTGTAGTAGCGGGTGACCAGTATGGTAACTATCTCATCCAATGGATTTTGATGAACGCCGCACCTCATCAACGA GAGCTCGTGGCGAGCCACATTCGGTAACACCCCCTGACTGTCTATCCTACTTTGAGTGGTCTGAAGTCTAACCTG ATTTAACTAGGAAACACATGGTCTCCCTTCGTGGCTCTAAATTTGGCTCTCGTGGGGCAATGCTTTGCTGCAACC CGTCTCATGCTACACGCCCTGGTCCTGGGGCTGGAATGCAAATTGGCCGTTTCAACAATTTCGACGCAGACAAAT TTACGACCACGAGCCAATCCGGTGGTCGTTTTGGCCGGGGACATCAATGGGGACCCCATTATGCGCCACTTCGTT GA |