Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9352.t1
Gene name
Locationscaffold_46:5975..8435
Strand+
Gene length (bp)2460
Transcript length (bp)2460
Coding sequence length (bp)2460
Protein length (aa) 820

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-09 279 332
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.4E-11 504 561
PF10378 RRM Putative RRM domain 1.9E-08 73 101

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 53 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 35.49 21.35 49.63
5d_25C Five days - 25 degrees Celsius 16.14 8.53 23.74
7d_25C Seven days - 25 degrees Celsius 18.56 9.58 27.54
10d_25C Ten days - 25 degrees Celsius 9.98 4.58 15.38
7d_15C Seven days - 15 degrees Celsius 16.60 7.22 25.97
7d_30C Seven days - 30 degrees Celsius 21.52 11.32 31.73

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.000700 yes
3d_25C 7d_25C 0.004840 yes
3d_25C 7d_15C 0.004045 yes
3d_25C 7d_30C 0.036293 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.681121 no
5d_25C 7d_15C 0.950790 no
5d_25C 7d_30C 0.317241 no
5d_25C 10d_25C 0.090191 no
7d_25C 7d_15C 0.778988 no
7d_25C 7d_30C 0.667192 no
7d_25C 10d_25C 0.026832 yes
7d_15C 7d_30C 0.437315 no
7d_15C 10d_25C 0.100869 no
7d_30C 10d_25C 0.005235 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9352.t1
MQASDVSSIPNNSRLIHPGSKYALNGDTGFSHGAYNNNHPNHIQGFSDRNTRRANIPAINTAAGQHSDMASGFDM
NYTPLLPSQLLVGSPFQPGTPSAFASPQFTNFGGFSQANGNGHSQNNQNHIHSPTQGMQNHGLYGMMSPDGMGIS
QMMGPQSPINGLGMGNGGLGSPQASVAPGMLSGTSRTVYLGNIPAETSAEEILNHVRSGQIESVRLLPDKNCAFI
SFLDSSSATHFHSDAILKKLAIKGNDIKVGWGKPSQVPTSVALAVQQSGASRNVYLGNLPEETSEEDLREDLGKF
GPIDTVKIVKEKAIGFVHFLSISNAMKSVTQLPQEPQWQAPKRVFYGKDRCAYVSKTQQQNAAQFLGIAPGYAHV
LNTADRDLISNALAQQSVAAAAVATTAGGVNNLGNRTIYLGNIHPETTIEEICNVVRGGLLHHVRYIPDKHICFV
TFIDPTSAASFYALSNLQGLMIHNRRLKIGWGKHSGPLPPAIALAVSGGASRNVYVGNLDEAWSEERLRQDFSEY
GEIELVNTLREKSCAFVNFTNIANAIKAIEGMRNREDYRRFKINFGKDRCGNPPRQAGNNQNGQNRNGGMEGQSP
PSVLNGFQQNLSQSGSQSSPTRPALSPASGSTGSHNGQHRHPLQNVTSPSGVLNIGSSNPLTMYLNQMSAHQAQE
QENHLHDHMALSGLQAQAQSQQSMYNSVSNGDMNGHMDQSMHQHKSSNSYLSVANGSGHGHHASTSSLSVPRASH
SRAVSLPSFSQEPFGPVSGQPHPRTGAHQPQSSFSSFSALGGLNHSGFGLAIQNENSLPGWAEEEIGAK*
Coding >Pro_DTO377G3_2|g9352.t1
ATGCAAGCCTCGGATGTATCGAGCATCCCGAACAATTCGCGTCTAATTCATCCTGGGTCTAAATACGCGCTGAAC
GGTGACACTGGCTTTTCTCACGGAGCGTACAACAACAACCACCCCAATCATATCCAAGGATTCTCGGACCGGAAT
ACGCGTCGCGCCAATATCCCCGCTATAAACACTGCCGCCGGCCAACACTCCGATATGGCTTCCGGCTTCGATATG
AACTACACCCCCCTGCTCCCTTCCCAGCTGCTGGTAGGCAGTCCCTTCCAACCAGGAACGCCCTCGGCTTTTGCT
TCGCCGCAGTTTACCAATTTCGGTGGCTTCTCACAAGCCAATGGCAATGGACACTCCCAAAACAACCAGAACCAT
ATCCACAGCCCTACGCAAGGAATGCAGAACCATGGTTTGTATGGCATGATGTCACCTGACGGTATGGGTATCTCC
CAGATGATGGGGCCGCAATCGCCGATTAATGGTCTTGGGATGGGCAATGGGGGTCTCGGCAGCCCCCAAGCGTCC
GTGGCCCCGGGCATGCTGTCGGGGACCAGTCGCACCGTGTATCTTGGAAACATCCCGGCTGAAACATCTGCCGAG
GAGATTTTAAACCACGTGCGTAGCGGTCAGATTGAGTCGGTGCGCCTGCTCCCTGATAAAAACTGCGCTTTCATC
TCCTTTTTGGATAGCAGCTCAGCCACTCATTTCCATTCCGATGCCATCTTGAAGAAGTTGGCCATCAAGGGAAAT
GATATCAAGGTCGGCTGGGGTAAGCCGTCGCAGGTTCCCACCTCAGTTGCCCTGGCTGTTCAACAGTCGGGCGCG
TCGCGTAATGTTTATCTTGGAAATTTGCCCGAGGAAACATCCGAGGAGGATCTGCGGGAGGATCTGGGCAAATTT
GGGCCCATTGACACCGTCAAGATCGTCAAGGAGAAGGCGATTGGATTCGTCCATTTCCTATCGATCAGTAATGCC
ATGAAGTCTGTCACCCAGCTCCCCCAGGAGCCGCAATGGCAAGCGCCAAAGCGGGTGTTCTACGGCAAGGACCGT
TGTGCGTATGTATCCAAGACTCAGCAGCAAAATGCTGCCCAGTTCCTCGGCATCGCACCCGGGTATGCACATGTG
CTGAACACGGCGGATCGTGATCTGATTTCTAATGCCCTTGCACAACAGTCTGTTGCCGCGGCCGCCGTGGCGACG
ACAGCAGGCGGTGTTAACAATCTCGGCAACCGCACCATTTACCTCGGAAACATTCACCCCGAAACAACGATCGAA
GAGATCTGCAATGTCGTTCGCGGAGGCTTGCTACACCATGTTCGGTATATCCCAGATAAGCACATTTGCTTCGTT
ACATTCATCGATCCCACTTCGGCCGCCTCCTTTTACGCCCTGAGCAACCTGCAGGGACTAATGATCCACAACCGG
CGCCTGAAGATTGGATGGGGCAAACACTCCGGCCCTCTCCCGCCCGCCATTGCGTTAGCAGTCAGCGGCGGTGCG
TCACGCAATGTCTATGTTGGTAACTTGGACGAGGCCTGGTCGGAGGAACGCCTTCGCCAGGACTTCTCGGAGTAT
GGTGAGATCGAGTTGGTGAACACGCTGCGCGAGAAGAGTTGTGCCTTTGTCAACTTCACGAATATCGCCAATGCC
ATCAAGGCTATTGAGGGAATGCGTAATCGGGAGGACTACCGGCGGTTCAAGATCAACTTTGGAAAGGACCGCTGC
GGAAACCCACCGCGTCAAGCCGGAAACAACCAAAATGGACAGAACCGCAACGGAGGCATGGAAGGCCAGTCACCA
CCGTCCGTTCTCAACGGATTCCAGCAGAACCTCAGCCAGTCTGGCTCCCAGTCAAGTCCGACTCGCCCTGCCCTT
TCCCCGGCATCGGGATCAACTGGGTCGCATAACGGACAGCATCGCCACCCGCTGCAGAACGTGACCTCTCCTTCT
GGGGTCCTGAATATCGGCTCAAGCAACCCGTTGACGATGTACCTGAACCAGATGTCTGCTCATCAGGCCCAGGAG
CAGGAGAACCATCTCCACGACCATATGGCCCTCTCTGGTCTACAGGCGCAGGCACAATCACAGCAGTCAATGTAT
AACAGCGTCAGCAACGGCGACATGAATGGACACATGGACCAGTCTATGCACCAGCACAAGTCCTCCAACAGCTAC
CTGAGTGTGGCAAATGGATCGGGACACGGCCACCACGCAAGCACCAGCAGTCTGAGCGTGCCCCGTGCTTCGCAC
TCACGGGCTGTCAGCCTGCCCTCATTCTCCCAGGAGCCCTTCGGACCTGTCTCTGGTCAACCCCACCCCCGCACA
GGTGCCCACCAGCCTCAGAGCAGCTTCTCCAGCTTCTCTGCCCTCGGTGGACTGAACCACTCAGGATTTGGTCTG
GCTATTCAAAACGAAAACTCGCTGCCCGGCTGGGCTGAAGAGGAGATCGGAGCCAAATAA
Transcript >Pro_DTO377G3_2|g9352.t1
ATGCAAGCCTCGGATGTATCGAGCATCCCGAACAATTCGCGTCTAATTCATCCTGGGTCTAAATACGCGCTGAAC
GGTGACACTGGCTTTTCTCACGGAGCGTACAACAACAACCACCCCAATCATATCCAAGGATTCTCGGACCGGAAT
ACGCGTCGCGCCAATATCCCCGCTATAAACACTGCCGCCGGCCAACACTCCGATATGGCTTCCGGCTTCGATATG
AACTACACCCCCCTGCTCCCTTCCCAGCTGCTGGTAGGCAGTCCCTTCCAACCAGGAACGCCCTCGGCTTTTGCT
TCGCCGCAGTTTACCAATTTCGGTGGCTTCTCACAAGCCAATGGCAATGGACACTCCCAAAACAACCAGAACCAT
ATCCACAGCCCTACGCAAGGAATGCAGAACCATGGTTTGTATGGCATGATGTCACCTGACGGTATGGGTATCTCC
CAGATGATGGGGCCGCAATCGCCGATTAATGGTCTTGGGATGGGCAATGGGGGTCTCGGCAGCCCCCAAGCGTCC
GTGGCCCCGGGCATGCTGTCGGGGACCAGTCGCACCGTGTATCTTGGAAACATCCCGGCTGAAACATCTGCCGAG
GAGATTTTAAACCACGTGCGTAGCGGTCAGATTGAGTCGGTGCGCCTGCTCCCTGATAAAAACTGCGCTTTCATC
TCCTTTTTGGATAGCAGCTCAGCCACTCATTTCCATTCCGATGCCATCTTGAAGAAGTTGGCCATCAAGGGAAAT
GATATCAAGGTCGGCTGGGGTAAGCCGTCGCAGGTTCCCACCTCAGTTGCCCTGGCTGTTCAACAGTCGGGCGCG
TCGCGTAATGTTTATCTTGGAAATTTGCCCGAGGAAACATCCGAGGAGGATCTGCGGGAGGATCTGGGCAAATTT
GGGCCCATTGACACCGTCAAGATCGTCAAGGAGAAGGCGATTGGATTCGTCCATTTCCTATCGATCAGTAATGCC
ATGAAGTCTGTCACCCAGCTCCCCCAGGAGCCGCAATGGCAAGCGCCAAAGCGGGTGTTCTACGGCAAGGACCGT
TGTGCGTATGTATCCAAGACTCAGCAGCAAAATGCTGCCCAGTTCCTCGGCATCGCACCCGGGTATGCACATGTG
CTGAACACGGCGGATCGTGATCTGATTTCTAATGCCCTTGCACAACAGTCTGTTGCCGCGGCCGCCGTGGCGACG
ACAGCAGGCGGTGTTAACAATCTCGGCAACCGCACCATTTACCTCGGAAACATTCACCCCGAAACAACGATCGAA
GAGATCTGCAATGTCGTTCGCGGAGGCTTGCTACACCATGTTCGGTATATCCCAGATAAGCACATTTGCTTCGTT
ACATTCATCGATCCCACTTCGGCCGCCTCCTTTTACGCCCTGAGCAACCTGCAGGGACTAATGATCCACAACCGG
CGCCTGAAGATTGGATGGGGCAAACACTCCGGCCCTCTCCCGCCCGCCATTGCGTTAGCAGTCAGCGGCGGTGCG
TCACGCAATGTCTATGTTGGTAACTTGGACGAGGCCTGGTCGGAGGAACGCCTTCGCCAGGACTTCTCGGAGTAT
GGTGAGATCGAGTTGGTGAACACGCTGCGCGAGAAGAGTTGTGCCTTTGTCAACTTCACGAATATCGCCAATGCC
ATCAAGGCTATTGAGGGAATGCGTAATCGGGAGGACTACCGGCGGTTCAAGATCAACTTTGGAAAGGACCGCTGC
GGAAACCCACCGCGTCAAGCCGGAAACAACCAAAATGGACAGAACCGCAACGGAGGCATGGAAGGCCAGTCACCA
CCGTCCGTTCTCAACGGATTCCAGCAGAACCTCAGCCAGTCTGGCTCCCAGTCAAGTCCGACTCGCCCTGCCCTT
TCCCCGGCATCGGGATCAACTGGGTCGCATAACGGACAGCATCGCCACCCGCTGCAGAACGTGACCTCTCCTTCT
GGGGTCCTGAATATCGGCTCAAGCAACCCGTTGACGATGTACCTGAACCAGATGTCTGCTCATCAGGCCCAGGAG
CAGGAGAACCATCTCCACGACCATATGGCCCTCTCTGGTCTACAGGCGCAGGCACAATCACAGCAGTCAATGTAT
AACAGCGTCAGCAACGGCGACATGAATGGACACATGGACCAGTCTATGCACCAGCACAAGTCCTCCAACAGCTAC
CTGAGTGTGGCAAATGGATCGGGACACGGCCACCACGCAAGCACCAGCAGTCTGAGCGTGCCCCGTGCTTCGCAC
TCACGGGCTGTCAGCCTGCCCTCATTCTCCCAGGAGCCCTTCGGACCTGTCTCTGGTCAACCCCACCCCCGCACA
GGTGCCCACCAGCCTCAGAGCAGCTTCTCCAGCTTCTCTGCCCTCGGTGGACTGAACCACTCAGGATTTGGTCTG
GCTATTCAAAACGAAAACTCGCTGCCCGGCTGGGCTGAAGAGGAGATCGGAGCCAAATAA
Gene >Pro_DTO377G3_2|g9352.t1
ATGCAAGCCTCGGATGTATCGAGCATCCCGAACAATTCGCGTCTAATTCATCCTGGGTCTAAATACGCGCTGAAC
GGTGACACTGGCTTTTCTCACGGAGCGTACAACAACAACCACCCCAATCATATCCAAGGATTCTCGGACCGGAAT
ACGCGTCGCGCCAATATCCCCGCTATAAACACTGCCGCCGGCCAACACTCCGATATGGCTTCCGGCTTCGATATG
AACTACACCCCCCTGCTCCCTTCCCAGCTGCTGGTAGGCAGTCCCTTCCAACCAGGAACGCCCTCGGCTTTTGCT
TCGCCGCAGTTTACCAATTTCGGTGGCTTCTCACAAGCCAATGGCAATGGACACTCCCAAAACAACCAGAACCAT
ATCCACAGCCCTACGCAAGGAATGCAGAACCATGGTTTGTATGGCATGATGTCACCTGACGGTATGGGTATCTCC
CAGATGATGGGGCCGCAATCGCCGATTAATGGTCTTGGGATGGGCAATGGGGGTCTCGGCAGCCCCCAAGCGTCC
GTGGCCCCGGGCATGCTGTCGGGGACCAGTCGCACCGTGTATCTTGGAAACATCCCGGCTGAAACATCTGCCGAG
GAGATTTTAAACCACGTGCGTAGCGGTCAGATTGAGTCGGTGCGCCTGCTCCCTGATAAAAACTGCGCTTTCATC
TCCTTTTTGGATAGCAGCTCAGCCACTCATTTCCATTCCGATGCCATCTTGAAGAAGTTGGCCATCAAGGGAAAT
GATATCAAGGTCGGCTGGGGTAAGCCGTCGCAGGTTCCCACCTCAGTTGCCCTGGCTGTTCAACAGTCGGGCGCG
TCGCGTAATGTTTATCTTGGAAATTTGCCCGAGGAAACATCCGAGGAGGATCTGCGGGAGGATCTGGGCAAATTT
GGGCCCATTGACACCGTCAAGATCGTCAAGGAGAAGGCGATTGGATTCGTCCATTTCCTATCGATCAGTAATGCC
ATGAAGTCTGTCACCCAGCTCCCCCAGGAGCCGCAATGGCAAGCGCCAAAGCGGGTGTTCTACGGCAAGGACCGT
TGTGCGTATGTATCCAAGACTCAGCAGCAAAATGCTGCCCAGTTCCTCGGCATCGCACCCGGGTATGCACATGTG
CTGAACACGGCGGATCGTGATCTGATTTCTAATGCCCTTGCACAACAGTCTGTTGCCGCGGCCGCCGTGGCGACG
ACAGCAGGCGGTGTTAACAATCTCGGCAACCGCACCATTTACCTCGGAAACATTCACCCCGAAACAACGATCGAA
GAGATCTGCAATGTCGTTCGCGGAGGCTTGCTACACCATGTTCGGTATATCCCAGATAAGCACATTTGCTTCGTT
ACATTCATCGATCCCACTTCGGCCGCCTCCTTTTACGCCCTGAGCAACCTGCAGGGACTAATGATCCACAACCGG
CGCCTGAAGATTGGATGGGGCAAACACTCCGGCCCTCTCCCGCCCGCCATTGCGTTAGCAGTCAGCGGCGGTGCG
TCACGCAATGTCTATGTTGGTAACTTGGACGAGGCCTGGTCGGAGGAACGCCTTCGCCAGGACTTCTCGGAGTAT
GGTGAGATCGAGTTGGTGAACACGCTGCGCGAGAAGAGTTGTGCCTTTGTCAACTTCACGAATATCGCCAATGCC
ATCAAGGCTATTGAGGGAATGCGTAATCGGGAGGACTACCGGCGGTTCAAGATCAACTTTGGAAAGGACCGCTGC
GGAAACCCACCGCGTCAAGCCGGAAACAACCAAAATGGACAGAACCGCAACGGAGGCATGGAAGGCCAGTCACCA
CCGTCCGTTCTCAACGGATTCCAGCAGAACCTCAGCCAGTCTGGCTCCCAGTCAAGTCCGACTCGCCCTGCCCTT
TCCCCGGCATCGGGATCAACTGGGTCGCATAACGGACAGCATCGCCACCCGCTGCAGAACGTGACCTCTCCTTCT
GGGGTCCTGAATATCGGCTCAAGCAACCCGTTGACGATGTACCTGAACCAGATGTCTGCTCATCAGGCCCAGGAG
CAGGAGAACCATCTCCACGACCATATGGCCCTCTCTGGTCTACAGGCGCAGGCACAATCACAGCAGTCAATGTAT
AACAGCGTCAGCAACGGCGACATGAATGGACACATGGACCAGTCTATGCACCAGCACAAGTCCTCCAACAGCTAC
CTGAGTGTGGCAAATGGATCGGGACACGGCCACCACGCAAGCACCAGCAGTCTGAGCGTGCCCCGTGCTTCGCAC
TCACGGGCTGTCAGCCTGCCCTCATTCTCCCAGGAGCCCTTCGGACCTGTCTCTGGTCAACCCCACCCCCGCACA
GGTGCCCACCAGCCTCAGAGCAGCTTCTCCAGCTTCTCTGCCCTCGGTGGACTGAACCACTCAGGATTTGGTCTG
GCTATTCAAAACGAAAACTCGCTGCCCGGCTGGGCTGAAGAGGAGATCGGAGCCAAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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