© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9349.t1 |
| Gene name | |
| Location | scaffold_45:148641..149731 |
| Strand | + |
| Gene length (bp) | 1090 |
| Transcript length (bp) | 918 |
| Coding sequence length (bp) | 918 |
| Protein length (aa) | 306 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00970 | FAD_binding_6 | Oxidoreductase FAD-binding domain | 4.1E-33 | 61 | 160 |
| PF00175 | NAD_binding_1 | Oxidoreductase NAD-binding domain | 1.7E-27 | 170 | 281 |
| PF08030 | NAD_binding_6 | Ferric reductase NAD binding domain | 9.0E-05 | 167 | 228 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 2 | 23 | 21 |
| 2 | 27 | 44 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 127.36 | 77.44 | 177.29 |
| 5d_25C | Five days - 25 degrees Celsius | 117.02 | 71.02 | 163.01 |
| 7d_25C | Seven days - 25 degrees Celsius | 114.60 | 69.49 | 159.70 |
| 10d_25C | Ten days - 25 degrees Celsius | 104.51 | 62.68 | 146.34 |
| 7d_15C | Seven days - 15 degrees Celsius | 100.22 | 60.15 | 140.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 131.72 | 79.56 | 183.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.775534 | no |
| 3d_25C | 7d_25C | 0.716462 | no |
| 3d_25C | 7d_15C | 0.326929 | no |
| 3d_25C | 7d_30C | 0.920299 | no |
| 3d_25C | 10d_25C | 0.436298 | no |
| 5d_25C | 7d_25C | 0.952522 | no |
| 5d_25C | 7d_15C | 0.563061 | no |
| 5d_25C | 7d_30C | 0.669276 | no |
| 5d_25C | 10d_25C | 0.693442 | no |
| 7d_25C | 7d_15C | 0.628560 | no |
| 7d_25C | 7d_30C | 0.604237 | no |
| 7d_25C | 10d_25C | 0.756047 | no |
| 7d_15C | 7d_30C | 0.243370 | no |
| 7d_15C | 10d_25C | 0.902694 | no |
| 7d_30C | 10d_25C | 0.334867 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 3802 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9349.t1 MSLANIGTALVPSALLIASVYAIKPEFIAYAIAVAGVLAGYLVFSTSKPRKVLNPTEFQNFVLKEKNEISHNVAI YRFALPRSTDILGLPIGQHISLAATIAGQPKEVVRSYTPISSDNEAGYFDLLVKAYPQGNISKYLTELKIGDNMK VRGPKGAMVYTPNMCRHIGMISGGTGITPMLQVIKAIIRNRPRNGGNDTTKVDLIFANVNPEDILLKDQLEELEK EDDGFRIYYVLNNPPEGWTGGVGFVTPDMIKERLPAPAADVKILLCGPPPMVSAMKKATEALGYTKARPVSKLED QVFCF* |
| Coding | >Pro_DTO377G3_2|g9349.t1 ATGAGCCTCGCCAACATCGGCACGGCCCTCGTGCCCTCGGCCCTGCTCATCGCGAGTGTTTACGCCATTAAGCCC GAGTTTATCGCCTATGCAATTGCTGTCGCTGGAGTTCTGGCTGGTTACTTGGTTTTCAGCACCAGTAAGCCTCGC AAGGTCTTGAACCCCACCGAGTTCCAGAACTTCGTCCTCAAGGAGAAGAACGAGATCTCTCACAATGTCGCTATC TACCGTTTTGCCCTCCCCCGTTCCACCGATATCCTCGGCCTCCCCATCGGTCAGCACATCTCTCTCGCCGCCACT ATCGCCGGTCAGCCCAAGGAGGTTGTCCGCTCTTACACCCCTATCTCCTCCGACAATGAGGCCGGCTACTTCGAT CTGCTCGTCAAGGCTTACCCCCAGGGTAACATCTCCAAGTATCTTACCGAACTGAAGATTGGCGACAACATGAAG GTCCGTGGCCCCAAGGGCGCCATGGTGTACACCCCCAACATGTGCCGCCACATTGGTATGATCTCCGGCGGCACT GGTATTACCCCTATGCTGCAGGTCATCAAGGCCATCATCCGCAACCGTCCCCGCAACGGTGGCAACGACACCACC AAGGTTGACCTCATCTTCGCCAACGTCAACCCCGAGGACATCTTGCTCAAGGACCAGCTCGAGGAGTTGGAGAAG GAGGATGATGGATTCCGCATCTACTACGTTCTTAACAACCCGCCCGAGGGCTGGACTGGCGGTGTTGGCTTTGTG ACTCCCGACATGATCAAGGAGCGCCTGCCCGCCCCCGCTGCCGATGTTAAGATTTTGCTCTGCGGTCCCCCTCCC ATGGTCAGCGCGATGAAGAAGGCCACCGAGGCTCTTGGATACACCAAGGCGCGCCCCGTCAGCAAGCTGGAGGAC CAGGTCTTCTGCTTCTAA |
| Transcript | >Pro_DTO377G3_2|g9349.t1 ATGAGCCTCGCCAACATCGGCACGGCCCTCGTGCCCTCGGCCCTGCTCATCGCGAGTGTTTACGCCATTAAGCCC GAGTTTATCGCCTATGCAATTGCTGTCGCTGGAGTTCTGGCTGGTTACTTGGTTTTCAGCACCAGTAAGCCTCGC AAGGTCTTGAACCCCACCGAGTTCCAGAACTTCGTCCTCAAGGAGAAGAACGAGATCTCTCACAATGTCGCTATC TACCGTTTTGCCCTCCCCCGTTCCACCGATATCCTCGGCCTCCCCATCGGTCAGCACATCTCTCTCGCCGCCACT ATCGCCGGTCAGCCCAAGGAGGTTGTCCGCTCTTACACCCCTATCTCCTCCGACAATGAGGCCGGCTACTTCGAT CTGCTCGTCAAGGCTTACCCCCAGGGTAACATCTCCAAGTATCTTACCGAACTGAAGATTGGCGACAACATGAAG GTCCGTGGCCCCAAGGGCGCCATGGTGTACACCCCCAACATGTGCCGCCACATTGGTATGATCTCCGGCGGCACT GGTATTACCCCTATGCTGCAGGTCATCAAGGCCATCATCCGCAACCGTCCCCGCAACGGTGGCAACGACACCACC AAGGTTGACCTCATCTTCGCCAACGTCAACCCCGAGGACATCTTGCTCAAGGACCAGCTCGAGGAGTTGGAGAAG GAGGATGATGGATTCCGCATCTACTACGTTCTTAACAACCCGCCCGAGGGCTGGACTGGCGGTGTTGGCTTTGTG ACTCCCGACATGATCAAGGAGCGCCTGCCCGCCCCCGCTGCCGATGTTAAGATTTTGCTCTGCGGTCCCCCTCCC ATGGTCAGCGCGATGAAGAAGGCCACCGAGGCTCTTGGATACACCAAGGCGCGCCCCGTCAGCAAGCTGGAGGAC CAGGTCTTCTGCTTCTAA |
| Gene | >Pro_DTO377G3_2|g9349.t1 ATGAGGTGAGTCGATCTTCTCCTGTAATATCGAACAATGGCTGATTCCTCCAAGCCTCGCCAACATCGGCACGGC CCTCGTGCCCTCGGCCCTGCTCATCGCGAGTGTTTACGCCATTAAGCCCGAGTTTATCGCCTATGCAATTGCTGT CGCTGGAGTTCTGGCTGGTTACTTGGTTTTCAGCACCAGTAGTGCGTGCATCTTTTTATGTCCAAATACTGGAGT GAGGAATTAAGCTGACCCCCGATGTCGCAGAGCCTCGCAAGGTCTTGAACCCCACCGAGTTCCAGAACTTCGTCC TCAAGGAGAAGAACGAGATCTCTCACAATGTCGCTATCTACCGTTTTGCCCTCCCCCGTTCCACCGATATCCTCG GCCTCCCCATCGGTCAGCACATCTCTCTCGCCGCCACTATCGCCGGTCAGCCCAAGGAGGTTGTCCGCTCTTACA CCCCTATCTCCTCCGACAATGAGGCCGGCTACTTCGATCTGCTCGTCAAGGCTTACCCCCAGGGTAACATCTCCA AGTATCTTACCGAACTGAAGATTGGCGACAACATGAAGGTCCGTGGCCCCAAGGGCGCCATGGTGTACACCCCCA ACATGTGCCGCCACATTGGTATGATCTCCGGCGGCACTGGTATTACCCCTATGCTGCAGGTCATCAAGGCCATCA TCCGCAACCGTCCCCGCAACGGTGGCAACGACACCACCAAGGTTGACCTCATCTTCGCCAACGTCAACCCCGAGG ACATCTTGCTCAAGGACCAGCTCGAGGAGTTGGAGAAGGAGGATGATGGATTCCGCATCTACTACGTTCTTAACA ACCCGCCCGAGGGCTGGACTGGCGGTGTTGGCTTTGTGACTCCCGACATGATCAAGGTAAGTTTGCGTGCTGTGC TCGCCTGTGCCACCTCGGTATTAATTAAGCTTTATTATAGGAGCGCCTGCCCGCCCCCGCTGCCGATGTTAAGAT TTTGCTCTGCGGTCCCCCTCCCATGGTCAGCGCGATGAAGAAGGCCACCGAGGCTCTTGGATACACCAAGGCGCG CCCCGTCAGCAAGCTGGAGGACCAGGTCTTCTGCTTCTAA |