Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9349.t1
Gene name
Locationscaffold_45:148641..149731
Strand+
Gene length (bp)1090
Transcript length (bp)918
Coding sequence length (bp)918
Protein length (aa) 306

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00970 FAD_binding_6 Oxidoreductase FAD-binding domain 4.1E-33 61 160
PF00175 NAD_binding_1 Oxidoreductase NAD-binding domain 1.7E-27 170 281
PF08030 NAD_binding_6 Ferric reductase NAD binding domain 9.0E-05 167 228

GO

GO Term Description Terminal node
GO:0016491 oxidoreductase activity Yes
GO:0003674 molecular_function No
GO:0003824 catalytic activity No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 2 23 21
2 27 44 17

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 127.36 77.44 177.29
5d_25C Five days - 25 degrees Celsius 117.02 71.02 163.01
7d_25C Seven days - 25 degrees Celsius 114.60 69.49 159.70
10d_25C Ten days - 25 degrees Celsius 104.51 62.68 146.34
7d_15C Seven days - 15 degrees Celsius 100.22 60.15 140.28
7d_30C Seven days - 30 degrees Celsius 131.72 79.56 183.88

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.775534 no
3d_25C 7d_25C 0.716462 no
3d_25C 7d_15C 0.326929 no
3d_25C 7d_30C 0.920299 no
3d_25C 10d_25C 0.436298 no
5d_25C 7d_25C 0.952522 no
5d_25C 7d_15C 0.563061 no
5d_25C 7d_30C 0.669276 no
5d_25C 10d_25C 0.693442 no
7d_25C 7d_15C 0.628560 no
7d_25C 7d_30C 0.604237 no
7d_25C 10d_25C 0.756047 no
7d_15C 7d_30C 0.243370 no
7d_15C 10d_25C 0.902694 no
7d_30C 10d_25C 0.334867 no

Orthologs

Orthofinder run ID2
Orthogroup3802
Change Orthofinder run
Species Protein ID
Penicillium roqueforti DTO002I6 Pro_DTO002I6_2|g4306.t1
Penicillium roqueforti DTO003C3 Pro_DTO003C3_2|g7866.t1
Penicillium roqueforti DTO003H1 (CBS 147308) Pro_DTO003H1_2|g7720.t1
Penicillium roqueforti DTO006G1 Pro_DTO006G1_2|g4180.t1
Penicillium roqueforti DTO006G7 Pro_DTO006G7_3|g9899.t1
Penicillium roqueforti DTO012A1 Pro_DTO012A1_2|g2731.t1
Penicillium roqueforti DTO012A2 (CBS 147309) Pro_DTO012A2_2|g8556.t1
Penicillium roqueforti DTO012A6 (CBS 147310) Pro_DTO012A6_2|g6129.t1
Penicillium roqueforti DTO012A7 Pro_DTO012A7_2|g2382.t1
Penicillium roqueforti DTO012A8 Pro_DTO012A8_2|g4846.t1
Penicillium roqueforti DTO012A9 Pro_DTO012A9_2|g8627.t1
Penicillium roqueforti DTO013E5 Pro_DTO013E5_2|g2257.t1
Penicillium roqueforti DTO013F2 Pro_DTO013F2_2|g7465.t1
Penicillium roqueforti DTO013F5 (CBS 147311) Pro_DTO013F5_2|g3654.t1
Penicillium roqueforti DTO027I6 Pro_DTO027I6_2|g7931.t1
Penicillium roqueforti DTO032C6 Pro_DTO032C6_2|g5399.t1
Penicillium roqueforti DTO039G3 Pro_DTO039G3_2|g977.t1
Penicillium roqueforti DTO046C5 Pro_DTO046C5_2|g2010.t1
Penicillium roqueforti DTO070G2 (CBS 147317) Pro_DTO070G2_2|g2420.t1
Penicillium roqueforti DTO081F9 (CBS 147318) Pro_DTO081F9_2|g9244.t1
Penicillium roqueforti DTO101D6 (CBS 147325) Pro_DTO101D6_2|g8427.t1
Penicillium roqueforti DTO102I9 (CBS 147326) Pro_DTO102I9_2|g2059.t1
Penicillium roqueforti DTO126G2 (CBS 147330) Pro_DTO126G2_2|g593.t1
Penicillium roqueforti DTO127F7 (CBS 147331) Pro_DTO127F7_2|g306.t1
Penicillium roqueforti DTO127F9 (CBS 147332) Pro_DTO127F9_2|g2849.t1
Penicillium roqueforti DTO130C1 (CBS 147333) Pro_DTO130C1_2|g8058.t1
Penicillium roqueforti DTO163C3 (CBS 147337) Pro_DTO163C3_2|g1497.t1
Penicillium roqueforti DTO163F5 (CBS 147338) Pro_DTO163F5_2|g3425.t1
Penicillium roqueforti DTO163G4 (CBS 147339) Pro_DTO163G4_2|g8072.t1
Penicillium roqueforti DTO265D5 (CBS 147372) Pro_DTO265D5_2|g1771.t1
Penicillium roqueforti DTO369A1 (CBS 147354) Pro_DTO369A1_2|g7550.t1
Penicillium roqueforti DTO375B1 (CBS 147355) Pro_DTO375B1_2|g4785.t1
Penicillium roqueforti DTO377G2 (LCP 96.3914a) Pro_DTO377G2_2|g655.t1
Penicillium roqueforti LCP96 04111 Pro_DTO377G3_2|g9349.t1 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9349.t1
MSLANIGTALVPSALLIASVYAIKPEFIAYAIAVAGVLAGYLVFSTSKPRKVLNPTEFQNFVLKEKNEISHNVAI
YRFALPRSTDILGLPIGQHISLAATIAGQPKEVVRSYTPISSDNEAGYFDLLVKAYPQGNISKYLTELKIGDNMK
VRGPKGAMVYTPNMCRHIGMISGGTGITPMLQVIKAIIRNRPRNGGNDTTKVDLIFANVNPEDILLKDQLEELEK
EDDGFRIYYVLNNPPEGWTGGVGFVTPDMIKERLPAPAADVKILLCGPPPMVSAMKKATEALGYTKARPVSKLED
QVFCF*
Coding >Pro_DTO377G3_2|g9349.t1
ATGAGCCTCGCCAACATCGGCACGGCCCTCGTGCCCTCGGCCCTGCTCATCGCGAGTGTTTACGCCATTAAGCCC
GAGTTTATCGCCTATGCAATTGCTGTCGCTGGAGTTCTGGCTGGTTACTTGGTTTTCAGCACCAGTAAGCCTCGC
AAGGTCTTGAACCCCACCGAGTTCCAGAACTTCGTCCTCAAGGAGAAGAACGAGATCTCTCACAATGTCGCTATC
TACCGTTTTGCCCTCCCCCGTTCCACCGATATCCTCGGCCTCCCCATCGGTCAGCACATCTCTCTCGCCGCCACT
ATCGCCGGTCAGCCCAAGGAGGTTGTCCGCTCTTACACCCCTATCTCCTCCGACAATGAGGCCGGCTACTTCGAT
CTGCTCGTCAAGGCTTACCCCCAGGGTAACATCTCCAAGTATCTTACCGAACTGAAGATTGGCGACAACATGAAG
GTCCGTGGCCCCAAGGGCGCCATGGTGTACACCCCCAACATGTGCCGCCACATTGGTATGATCTCCGGCGGCACT
GGTATTACCCCTATGCTGCAGGTCATCAAGGCCATCATCCGCAACCGTCCCCGCAACGGTGGCAACGACACCACC
AAGGTTGACCTCATCTTCGCCAACGTCAACCCCGAGGACATCTTGCTCAAGGACCAGCTCGAGGAGTTGGAGAAG
GAGGATGATGGATTCCGCATCTACTACGTTCTTAACAACCCGCCCGAGGGCTGGACTGGCGGTGTTGGCTTTGTG
ACTCCCGACATGATCAAGGAGCGCCTGCCCGCCCCCGCTGCCGATGTTAAGATTTTGCTCTGCGGTCCCCCTCCC
ATGGTCAGCGCGATGAAGAAGGCCACCGAGGCTCTTGGATACACCAAGGCGCGCCCCGTCAGCAAGCTGGAGGAC
CAGGTCTTCTGCTTCTAA
Transcript >Pro_DTO377G3_2|g9349.t1
ATGAGCCTCGCCAACATCGGCACGGCCCTCGTGCCCTCGGCCCTGCTCATCGCGAGTGTTTACGCCATTAAGCCC
GAGTTTATCGCCTATGCAATTGCTGTCGCTGGAGTTCTGGCTGGTTACTTGGTTTTCAGCACCAGTAAGCCTCGC
AAGGTCTTGAACCCCACCGAGTTCCAGAACTTCGTCCTCAAGGAGAAGAACGAGATCTCTCACAATGTCGCTATC
TACCGTTTTGCCCTCCCCCGTTCCACCGATATCCTCGGCCTCCCCATCGGTCAGCACATCTCTCTCGCCGCCACT
ATCGCCGGTCAGCCCAAGGAGGTTGTCCGCTCTTACACCCCTATCTCCTCCGACAATGAGGCCGGCTACTTCGAT
CTGCTCGTCAAGGCTTACCCCCAGGGTAACATCTCCAAGTATCTTACCGAACTGAAGATTGGCGACAACATGAAG
GTCCGTGGCCCCAAGGGCGCCATGGTGTACACCCCCAACATGTGCCGCCACATTGGTATGATCTCCGGCGGCACT
GGTATTACCCCTATGCTGCAGGTCATCAAGGCCATCATCCGCAACCGTCCCCGCAACGGTGGCAACGACACCACC
AAGGTTGACCTCATCTTCGCCAACGTCAACCCCGAGGACATCTTGCTCAAGGACCAGCTCGAGGAGTTGGAGAAG
GAGGATGATGGATTCCGCATCTACTACGTTCTTAACAACCCGCCCGAGGGCTGGACTGGCGGTGTTGGCTTTGTG
ACTCCCGACATGATCAAGGAGCGCCTGCCCGCCCCCGCTGCCGATGTTAAGATTTTGCTCTGCGGTCCCCCTCCC
ATGGTCAGCGCGATGAAGAAGGCCACCGAGGCTCTTGGATACACCAAGGCGCGCCCCGTCAGCAAGCTGGAGGAC
CAGGTCTTCTGCTTCTAA
Gene >Pro_DTO377G3_2|g9349.t1
ATGAGGTGAGTCGATCTTCTCCTGTAATATCGAACAATGGCTGATTCCTCCAAGCCTCGCCAACATCGGCACGGC
CCTCGTGCCCTCGGCCCTGCTCATCGCGAGTGTTTACGCCATTAAGCCCGAGTTTATCGCCTATGCAATTGCTGT
CGCTGGAGTTCTGGCTGGTTACTTGGTTTTCAGCACCAGTAGTGCGTGCATCTTTTTATGTCCAAATACTGGAGT
GAGGAATTAAGCTGACCCCCGATGTCGCAGAGCCTCGCAAGGTCTTGAACCCCACCGAGTTCCAGAACTTCGTCC
TCAAGGAGAAGAACGAGATCTCTCACAATGTCGCTATCTACCGTTTTGCCCTCCCCCGTTCCACCGATATCCTCG
GCCTCCCCATCGGTCAGCACATCTCTCTCGCCGCCACTATCGCCGGTCAGCCCAAGGAGGTTGTCCGCTCTTACA
CCCCTATCTCCTCCGACAATGAGGCCGGCTACTTCGATCTGCTCGTCAAGGCTTACCCCCAGGGTAACATCTCCA
AGTATCTTACCGAACTGAAGATTGGCGACAACATGAAGGTCCGTGGCCCCAAGGGCGCCATGGTGTACACCCCCA
ACATGTGCCGCCACATTGGTATGATCTCCGGCGGCACTGGTATTACCCCTATGCTGCAGGTCATCAAGGCCATCA
TCCGCAACCGTCCCCGCAACGGTGGCAACGACACCACCAAGGTTGACCTCATCTTCGCCAACGTCAACCCCGAGG
ACATCTTGCTCAAGGACCAGCTCGAGGAGTTGGAGAAGGAGGATGATGGATTCCGCATCTACTACGTTCTTAACA
ACCCGCCCGAGGGCTGGACTGGCGGTGTTGGCTTTGTGACTCCCGACATGATCAAGGTAAGTTTGCGTGCTGTGC
TCGCCTGTGCCACCTCGGTATTAATTAAGCTTTATTATAGGAGCGCCTGCCCGCCCCCGCTGCCGATGTTAAGAT
TTTGCTCTGCGGTCCCCCTCCCATGGTCAGCGCGATGAAGAAGGCCACCGAGGCTCTTGGATACACCAAGGCGCG
CCCCGTCAGCAAGCTGGAGGACCAGGTCTTCTGCTTCTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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