Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9347.t1
Gene name
Locationscaffold_45:146082..147485
Strand+
Gene length (bp)1403
Transcript length (bp)1128
Coding sequence length (bp)1128
Protein length (aa) 376

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.5

Transmembrane Domains

Domain # Start End Length
1 15 35 20
2 48 70 22
3 96 118 22
4 130 152 22
5 176 198 22
6 218 240 22
7 255 277 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.18 0.0 0.50
5d_25C Five days - 25 degrees Celsius 0.39 0.0 0.90
7d_25C Seven days - 25 degrees Celsius 0.05 0.0 0.18
10d_25C Ten days - 25 degrees Celsius 0.03 0.0 0.16
7d_15C Seven days - 15 degrees Celsius 0.34 0.0 0.84
7d_30C Seven days - 30 degrees Celsius 0.22 0.0 0.57

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.0 no
3d_25C 7d_25C 1.0 no
3d_25C 7d_15C 1.0 no
3d_25C 7d_30C 1.0 no
3d_25C 10d_25C 1.0 no
5d_25C 7d_25C 1.0 no
5d_25C 7d_15C 1.0 no
5d_25C 7d_30C 1.0 no
5d_25C 10d_25C 1.0 no
7d_25C 7d_15C 1.0 no
7d_25C 7d_30C 1.0 no
7d_25C 10d_25C 1.0 no
7d_15C 7d_30C 1.0 no
7d_15C 10d_25C 1.0 no
7d_30C 10d_25C 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9347.t1
MDAEYINQTKGPRILGVFWAFFSVSVVMVSLRFYIRVRVLRNIGLDDYIVLVAMVMVTSYTILTTVNVVLGYGSH
TSVLMEKGGIDLIERILVINYANFALGIMSFTTPKLAIAALLNRIMNPSRLSRVWLWILTASVFVTSTICIIVLF
TMCDPPRALWKVHLMSEGAKCRSTKILVGYAIFTGVLSAGVDLYLAVYPTVVLLQLQMSIQKKLALCAALGLGAV
ACAMAIIKCLQLPGLYNTEDSTYATADLVIWTSVESNIIIMASCIPTLGPIYEMIRGRRSWSSHARYESGKLRSY
TDRPTKKSASNTREDEDILMTTDIRVTRSGSQESILNSDQLRKEAYVAGKIHRTDQVKIEYETRPQGENGPAPSW
*
Coding >Pro_DTO377G3_2|g9347.t1
ATGGACGCTGAATACATAAACCAGACAAAGGGTCCACGTATTCTAGGGGTCTTCTGGGCTTTTTTCAGTGTAAGC
GTGGTGATGGTATCCTTACGATTTTATATCCGAGTCCGAGTGTTGAGGAACATTGGACTCGATGATTATATTGTC
CTGGTGGCAATGGTTATGGTCACCAGTTATACAATTCTCACCACGGTGAACGTCGTTTTAGGCTACGGAAGCCAT
ACCTCTGTCTTGATGGAAAAAGGCGGGATTGACTTGATCGAACGTATTCTAGTCATTAATTATGCAAACTTTGCA
CTAGGAATCATGTCTTTCACAACTCCAAAACTGGCAATCGCTGCTCTCCTGAATCGCATCATGAATCCCAGCCGC
TTGAGCCGAGTATGGCTATGGATATTGACAGCCTCGGTGTTCGTGACATCCACCATCTGCATCATCGTTCTATTC
ACCATGTGTGATCCTCCCCGGGCTTTATGGAAGGTACATCTCATGAGTGAGGGGGCAAAATGTCGTTCGACCAAG
ATTTTGGTGGGCTATGCAATCTTCACTGGAGTTCTGTCGGCGGGGGTCGATCTATATCTTGCAGTTTACCCGACT
GTGGTATTGCTACAACTTCAAATGTCGATTCAGAAAAAATTGGCCCTGTGTGCGGCTTTGGGGTTGGGCGCCGTA
GCCTGTGCAATGGCTATTATTAAGTGTCTACAGCTACCAGGTCTATATAATACGGAAGACTCAACATATGCAACA
GCAGATCTTGTTATATGGACGAGCGTCGAGTCCAACATCATCATAATGGCCTCCTGCATCCCAACCTTGGGTCCG
ATCTATGAAATGATTCGAGGCAGACGTTCCTGGAGCTCACACGCGCGATACGAGAGCGGAAAGTTGCGCTCTTAC
ACGGATAGACCCACGAAGAAATCGGCAAGCAATACTCGCGAGGACGAGGATATCCTCATGACCACGGATATTAGG
GTTACAAGGAGCGGCAGCCAAGAAAGCATTTTGAACTCGGATCAACTCCGGAAAGAGGCCTATGTGGCAGGTAAG
ATTCATCGCACGGATCAGGTAAAGATCGAGTACGAGACAAGACCTCAAGGTGAGAATGGACCTGCACCTTCATGG
TAG
Transcript >Pro_DTO377G3_2|g9347.t1
ATGGACGCTGAATACATAAACCAGACAAAGGGTCCACGTATTCTAGGGGTCTTCTGGGCTTTTTTCAGTGTAAGC
GTGGTGATGGTATCCTTACGATTTTATATCCGAGTCCGAGTGTTGAGGAACATTGGACTCGATGATTATATTGTC
CTGGTGGCAATGGTTATGGTCACCAGTTATACAATTCTCACCACGGTGAACGTCGTTTTAGGCTACGGAAGCCAT
ACCTCTGTCTTGATGGAAAAAGGCGGGATTGACTTGATCGAACGTATTCTAGTCATTAATTATGCAAACTTTGCA
CTAGGAATCATGTCTTTCACAACTCCAAAACTGGCAATCGCTGCTCTCCTGAATCGCATCATGAATCCCAGCCGC
TTGAGCCGAGTATGGCTATGGATATTGACAGCCTCGGTGTTCGTGACATCCACCATCTGCATCATCGTTCTATTC
ACCATGTGTGATCCTCCCCGGGCTTTATGGAAGGTACATCTCATGAGTGAGGGGGCAAAATGTCGTTCGACCAAG
ATTTTGGTGGGCTATGCAATCTTCACTGGAGTTCTGTCGGCGGGGGTCGATCTATATCTTGCAGTTTACCCGACT
GTGGTATTGCTACAACTTCAAATGTCGATTCAGAAAAAATTGGCCCTGTGTGCGGCTTTGGGGTTGGGCGCCGTA
GCCTGTGCAATGGCTATTATTAAGTGTCTACAGCTACCAGGTCTATATAATACGGAAGACTCAACATATGCAACA
GCAGATCTTGTTATATGGACGAGCGTCGAGTCCAACATCATCATAATGGCCTCCTGCATCCCAACCTTGGGTCCG
ATCTATGAAATGATTCGAGGCAGACGTTCCTGGAGCTCACACGCGCGATACGAGAGCGGAAAGTTGCGCTCTTAC
ACGGATAGACCCACGAAGAAATCGGCAAGCAATACTCGCGAGGACGAGGATATCCTCATGACCACGGATATTAGG
GTTACAAGGAGCGGCAGCCAAGAAAGCATTTTGAACTCGGATCAACTCCGGAAAGAGGCCTATGTGGCAGGTAAG
ATTCATCGCACGGATCAGGTAAAGATCGAGTACGAGACAAGACCTCAAGGTGAGAATGGACCTGCACCTTCATGG
TAG
Gene >Pro_DTO377G3_2|g9347.t1
ATGGACGCTGAATACATAAACCAGACAAAGGGTCCACGTATTCTAGGGGTCTTCTGGGCTTTTTTCAGTGTAAGC
GTGGTGATGGTATCCTTACGATTTTATATCCGAGTCCGAGTGTTGAGGAACATTGGACTCGATGATTATATTGTC
CTGGTGGCAATGGTATGTACCTTCTAGTTGATTTTGAGATACGCCAGATACCAATTACATAGGTTATGGTCACCA
GTTATACAATTCTCACCACGGTGAACGTCGTTTTAGGCTACGGAAGCCATACCTCTGTCTTGATGGAAAAAGGCG
GGATTGACTTGATCGAACGTATTCTAGTCATTAATTATGCAAACTTTGCACTAGGAATCATGTCTTTCACAACTC
CAAAACTGGCAATCGCTGCTCTCCTGAATCGCATCATGAATCCCAGCCGCTTGAGCCGAGTATGGCTATGGATAT
TGACAGCCTCGGTGTTCGTGACATCCACCATCTGCATCATCGTTCTATTCACCATGTGTGATCCTCCCCGGGCTT
TATGGAAGGTACATCTCATGAGTGAGGGGGCAAAATGTCGTTCGACCAAGATTTTGGTGGGCTATGCAATCTTCA
CTGGAGGTATGTTTCTGGACTGTATACTTTTCGCAAACCAGCAACTAAACATTCTCAGTTCTGTCGGCGGGGGTC
GATCTATATCTTGCAGTTTACCCGACTGTGGTATTGCTACAACTTCAAATGTCGATTCAGAAAAAATTGGCCCTG
TGTGCGGCTTTGGGGTTGGGCGCCGTGTAGGTTGATTGATGTTATTGTCTAGAGAAAGTAGCTGATCGTCTACAC
AGAGCCTGTGCAATGGCTATTATTAAGTGTCTACAGCTACCAGGTCTATATAATACGGAAGACTCAACATGTAAG
TTGCTTTAAGTGCATAACATGAGATATATATCACTGACACGGCATAATAGATGCAACAGCAGATCTTGTTATATG
GACGAGGTATGTTTTAAGTCCTATTTTTCTCCGGCCTTGACACAAAAACTTATATCGGCGTCTCATCTATCAGCG
TCGAGTCCAACATCATCATAATGGCCTCCTGCATCCCAACCTTGGGTCCGATCTATGAAATGATTCGAGGCAGAC
GTTCCTGGAGCTCACACGCGCGATACGAGAGCGGAAAGTTGCGCTCTTACACGGATAGACCCACGAAGAAATCGG
CAAGCAATACTCGCGAGGACGAGGATATCCTCATGACCACGGATATTAGGGTTACAAGGAGCGGCAGCCAAGAAA
GCATTTTGAACTCGGATCAACTCCGGAAAGAGGCCTATGTGGCAGGTAAGATTCATCGCACGGATCAGGTAAAGA
TCGAGTACGAGACAAGACCTCAAGGTGAGAATGGACCTGCACCTTCATGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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