© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9347.t1 |
| Gene name | |
| Location | scaffold_45:146082..147485 |
| Strand | + |
| Gene length (bp) | 1403 |
| Transcript length (bp) | 1128 |
| Coding sequence length (bp) | 1128 |
| Protein length (aa) | 376 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 35 | 20 |
| 2 | 48 | 70 | 22 |
| 3 | 96 | 118 | 22 |
| 4 | 130 | 152 | 22 |
| 5 | 176 | 198 | 22 |
| 6 | 218 | 240 | 22 |
| 7 | 255 | 277 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.18 | 0.0 | 0.50 |
| 5d_25C | Five days - 25 degrees Celsius | 0.39 | 0.0 | 0.90 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.05 | 0.0 | 0.18 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.03 | 0.0 | 0.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.34 | 0.0 | 0.84 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.22 | 0.0 | 0.57 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9347.t1 MDAEYINQTKGPRILGVFWAFFSVSVVMVSLRFYIRVRVLRNIGLDDYIVLVAMVMVTSYTILTTVNVVLGYGSH TSVLMEKGGIDLIERILVINYANFALGIMSFTTPKLAIAALLNRIMNPSRLSRVWLWILTASVFVTSTICIIVLF TMCDPPRALWKVHLMSEGAKCRSTKILVGYAIFTGVLSAGVDLYLAVYPTVVLLQLQMSIQKKLALCAALGLGAV ACAMAIIKCLQLPGLYNTEDSTYATADLVIWTSVESNIIIMASCIPTLGPIYEMIRGRRSWSSHARYESGKLRSY TDRPTKKSASNTREDEDILMTTDIRVTRSGSQESILNSDQLRKEAYVAGKIHRTDQVKIEYETRPQGENGPAPSW * |
| Coding | >Pro_DTO377G3_2|g9347.t1 ATGGACGCTGAATACATAAACCAGACAAAGGGTCCACGTATTCTAGGGGTCTTCTGGGCTTTTTTCAGTGTAAGC GTGGTGATGGTATCCTTACGATTTTATATCCGAGTCCGAGTGTTGAGGAACATTGGACTCGATGATTATATTGTC CTGGTGGCAATGGTTATGGTCACCAGTTATACAATTCTCACCACGGTGAACGTCGTTTTAGGCTACGGAAGCCAT ACCTCTGTCTTGATGGAAAAAGGCGGGATTGACTTGATCGAACGTATTCTAGTCATTAATTATGCAAACTTTGCA CTAGGAATCATGTCTTTCACAACTCCAAAACTGGCAATCGCTGCTCTCCTGAATCGCATCATGAATCCCAGCCGC TTGAGCCGAGTATGGCTATGGATATTGACAGCCTCGGTGTTCGTGACATCCACCATCTGCATCATCGTTCTATTC ACCATGTGTGATCCTCCCCGGGCTTTATGGAAGGTACATCTCATGAGTGAGGGGGCAAAATGTCGTTCGACCAAG ATTTTGGTGGGCTATGCAATCTTCACTGGAGTTCTGTCGGCGGGGGTCGATCTATATCTTGCAGTTTACCCGACT GTGGTATTGCTACAACTTCAAATGTCGATTCAGAAAAAATTGGCCCTGTGTGCGGCTTTGGGGTTGGGCGCCGTA GCCTGTGCAATGGCTATTATTAAGTGTCTACAGCTACCAGGTCTATATAATACGGAAGACTCAACATATGCAACA GCAGATCTTGTTATATGGACGAGCGTCGAGTCCAACATCATCATAATGGCCTCCTGCATCCCAACCTTGGGTCCG ATCTATGAAATGATTCGAGGCAGACGTTCCTGGAGCTCACACGCGCGATACGAGAGCGGAAAGTTGCGCTCTTAC ACGGATAGACCCACGAAGAAATCGGCAAGCAATACTCGCGAGGACGAGGATATCCTCATGACCACGGATATTAGG GTTACAAGGAGCGGCAGCCAAGAAAGCATTTTGAACTCGGATCAACTCCGGAAAGAGGCCTATGTGGCAGGTAAG ATTCATCGCACGGATCAGGTAAAGATCGAGTACGAGACAAGACCTCAAGGTGAGAATGGACCTGCACCTTCATGG TAG |
| Transcript | >Pro_DTO377G3_2|g9347.t1 ATGGACGCTGAATACATAAACCAGACAAAGGGTCCACGTATTCTAGGGGTCTTCTGGGCTTTTTTCAGTGTAAGC GTGGTGATGGTATCCTTACGATTTTATATCCGAGTCCGAGTGTTGAGGAACATTGGACTCGATGATTATATTGTC CTGGTGGCAATGGTTATGGTCACCAGTTATACAATTCTCACCACGGTGAACGTCGTTTTAGGCTACGGAAGCCAT ACCTCTGTCTTGATGGAAAAAGGCGGGATTGACTTGATCGAACGTATTCTAGTCATTAATTATGCAAACTTTGCA CTAGGAATCATGTCTTTCACAACTCCAAAACTGGCAATCGCTGCTCTCCTGAATCGCATCATGAATCCCAGCCGC TTGAGCCGAGTATGGCTATGGATATTGACAGCCTCGGTGTTCGTGACATCCACCATCTGCATCATCGTTCTATTC ACCATGTGTGATCCTCCCCGGGCTTTATGGAAGGTACATCTCATGAGTGAGGGGGCAAAATGTCGTTCGACCAAG ATTTTGGTGGGCTATGCAATCTTCACTGGAGTTCTGTCGGCGGGGGTCGATCTATATCTTGCAGTTTACCCGACT GTGGTATTGCTACAACTTCAAATGTCGATTCAGAAAAAATTGGCCCTGTGTGCGGCTTTGGGGTTGGGCGCCGTA GCCTGTGCAATGGCTATTATTAAGTGTCTACAGCTACCAGGTCTATATAATACGGAAGACTCAACATATGCAACA GCAGATCTTGTTATATGGACGAGCGTCGAGTCCAACATCATCATAATGGCCTCCTGCATCCCAACCTTGGGTCCG ATCTATGAAATGATTCGAGGCAGACGTTCCTGGAGCTCACACGCGCGATACGAGAGCGGAAAGTTGCGCTCTTAC ACGGATAGACCCACGAAGAAATCGGCAAGCAATACTCGCGAGGACGAGGATATCCTCATGACCACGGATATTAGG GTTACAAGGAGCGGCAGCCAAGAAAGCATTTTGAACTCGGATCAACTCCGGAAAGAGGCCTATGTGGCAGGTAAG ATTCATCGCACGGATCAGGTAAAGATCGAGTACGAGACAAGACCTCAAGGTGAGAATGGACCTGCACCTTCATGG TAG |
| Gene | >Pro_DTO377G3_2|g9347.t1 ATGGACGCTGAATACATAAACCAGACAAAGGGTCCACGTATTCTAGGGGTCTTCTGGGCTTTTTTCAGTGTAAGC GTGGTGATGGTATCCTTACGATTTTATATCCGAGTCCGAGTGTTGAGGAACATTGGACTCGATGATTATATTGTC CTGGTGGCAATGGTATGTACCTTCTAGTTGATTTTGAGATACGCCAGATACCAATTACATAGGTTATGGTCACCA GTTATACAATTCTCACCACGGTGAACGTCGTTTTAGGCTACGGAAGCCATACCTCTGTCTTGATGGAAAAAGGCG GGATTGACTTGATCGAACGTATTCTAGTCATTAATTATGCAAACTTTGCACTAGGAATCATGTCTTTCACAACTC CAAAACTGGCAATCGCTGCTCTCCTGAATCGCATCATGAATCCCAGCCGCTTGAGCCGAGTATGGCTATGGATAT TGACAGCCTCGGTGTTCGTGACATCCACCATCTGCATCATCGTTCTATTCACCATGTGTGATCCTCCCCGGGCTT TATGGAAGGTACATCTCATGAGTGAGGGGGCAAAATGTCGTTCGACCAAGATTTTGGTGGGCTATGCAATCTTCA CTGGAGGTATGTTTCTGGACTGTATACTTTTCGCAAACCAGCAACTAAACATTCTCAGTTCTGTCGGCGGGGGTC GATCTATATCTTGCAGTTTACCCGACTGTGGTATTGCTACAACTTCAAATGTCGATTCAGAAAAAATTGGCCCTG TGTGCGGCTTTGGGGTTGGGCGCCGTGTAGGTTGATTGATGTTATTGTCTAGAGAAAGTAGCTGATCGTCTACAC AGAGCCTGTGCAATGGCTATTATTAAGTGTCTACAGCTACCAGGTCTATATAATACGGAAGACTCAACATGTAAG TTGCTTTAAGTGCATAACATGAGATATATATCACTGACACGGCATAATAGATGCAACAGCAGATCTTGTTATATG GACGAGGTATGTTTTAAGTCCTATTTTTCTCCGGCCTTGACACAAAAACTTATATCGGCGTCTCATCTATCAGCG TCGAGTCCAACATCATCATAATGGCCTCCTGCATCCCAACCTTGGGTCCGATCTATGAAATGATTCGAGGCAGAC GTTCCTGGAGCTCACACGCGCGATACGAGAGCGGAAAGTTGCGCTCTTACACGGATAGACCCACGAAGAAATCGG CAAGCAATACTCGCGAGGACGAGGATATCCTCATGACCACGGATATTAGGGTTACAAGGAGCGGCAGCCAAGAAA GCATTTTGAACTCGGATCAACTCCGGAAAGAGGCCTATGTGGCAGGTAAGATTCATCGCACGGATCAGGTAAAGA TCGAGTACGAGACAAGACCTCAAGGTGAGAATGGACCTGCACCTTCATGGTAG |