© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g9335.t1 |
| Gene name | |
| Location | scaffold_45:106526..107195 |
| Strand | - |
| Gene length (bp) | 669 |
| Transcript length (bp) | 615 |
| Coding sequence length (bp) | 615 |
| Protein length (aa) | 205 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02466 | Tim17 | Tim17/Tim22/Tim23/Pmp24 family | 6.0E-26 | 82 | 192 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 181 | 198 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 112.03 | 63.99 | 160.08 |
| 5d_25C | Five days - 25 degrees Celsius | 99.01 | 55.39 | 142.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 96.68 | 53.88 | 139.48 |
| 10d_25C | Ten days - 25 degrees Celsius | 113.63 | 65.07 | 162.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 93.50 | 51.48 | 135.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 107.71 | 60.93 | 154.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.691512 | no |
| 3d_25C | 7d_25C | 0.628189 | no |
| 3d_25C | 7d_15C | 0.535952 | no |
| 3d_25C | 7d_30C | 0.913564 | no |
| 3d_25C | 10d_25C | 0.971867 | no |
| 5d_25C | 7d_25C | 0.952800 | no |
| 5d_25C | 7d_15C | 0.877537 | no |
| 5d_25C | 7d_30C | 0.800650 | no |
| 5d_25C | 10d_25C | 0.651290 | no |
| 7d_25C | 7d_15C | 0.933233 | no |
| 7d_25C | 7d_30C | 0.734070 | no |
| 7d_25C | 10d_25C | 0.582121 | no |
| 7d_15C | 7d_30C | 0.648473 | no |
| 7d_15C | 10d_25C | 0.502056 | no |
| 7d_30C | 10d_25C | 0.880927 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9335.t1 MSIWDSLSGRKQTGPEAFDPSTAQDATSFLSEVAIPDPSRLHPLAGLNQDTLDYLSLDDTALDELPGSRSVLPSR GWSDDLCYGAGTTYLVALATGGAWGLVEGLKKTPPTAAPKIRLNGVLNSVTRRGPFLGNSAGVVAMVYNGFNSSL GYVRGKHDATNSIVAGALSGMVFKSTRGLKPMMISGGIVATIAGAWAVTRRAFF* |
| Coding | >Pro_DTO377G3_2|g9335.t1 ATGTCCATCTGGGACTCCCTCAGCGGCCGCAAGCAAACCGGGCCCGAGGCCTTCGACCCTTCAACCGCGCAAGAT GCCACATCCTTCCTCTCCGAGGTCGCTATTCCCGATCCCTCTCGCCTCCATCCTCTGGCTGGTTTGAACCAGGAT ACCCTCGACTACCTCTCCCTCGATGACACTGCCCTTGACGAACTCCCCGGCTCCCGATCAGTGTTGCCATCCCGT GGATGGTCAGATGACCTTTGTTATGGTGCCGGTACTACCTATCTCGTTGCACTCGCTACTGGAGGCGCGTGGGGA CTTGTAGAAGGATTGAAAAAGACACCACCCACGGCAGCACCCAAAATTCGACTCAACGGTGTACTCAACTCCGTT ACCCGTCGCGGTCCGTTCCTCGGAAACTCGGCTGGTGTTGTAGCTATGGTTTACAACGGATTCAACTCCAGCCTC GGATATGTGCGAGGCAAGCATGACGCGACTAACAGCATCGTGGCCGGCGCATTGAGCGGCATGGTCTTCAAGAGC ACGCGTGGACTTAAGCCAATGATGATCTCTGGCGGCATTGTGGCTACCATTGCTGGTGCCTGGGCTGTGACCCGA AGGGCCTTCTTCTAG |
| Transcript | >Pro_DTO377G3_2|g9335.t1 ATGTCCATCTGGGACTCCCTCAGCGGCCGCAAGCAAACCGGGCCCGAGGCCTTCGACCCTTCAACCGCGCAAGAT GCCACATCCTTCCTCTCCGAGGTCGCTATTCCCGATCCCTCTCGCCTCCATCCTCTGGCTGGTTTGAACCAGGAT ACCCTCGACTACCTCTCCCTCGATGACACTGCCCTTGACGAACTCCCCGGCTCCCGATCAGTGTTGCCATCCCGT GGATGGTCAGATGACCTTTGTTATGGTGCCGGTACTACCTATCTCGTTGCACTCGCTACTGGAGGCGCGTGGGGA CTTGTAGAAGGATTGAAAAAGACACCACCCACGGCAGCACCCAAAATTCGACTCAACGGTGTACTCAACTCCGTT ACCCGTCGCGGTCCGTTCCTCGGAAACTCGGCTGGTGTTGTAGCTATGGTTTACAACGGATTCAACTCCAGCCTC GGATATGTGCGAGGCAAGCATGACGCGACTAACAGCATCGTGGCCGGCGCATTGAGCGGCATGGTCTTCAAGAGC ACGCGTGGACTTAAGCCAATGATGATCTCTGGCGGCATTGTGGCTACCATTGCTGGTGCCTGGGCTGTGACCCGA AGGGCCTTCTTCTAG |
| Gene | >Pro_DTO377G3_2|g9335.t1 ATGTCCATCTGGGACTCCCTCAGCGGCCGCAAGCAAACCGGGCCCGAGGCCTTCGACCCTTCAACCGCGCAAGAT GCCACATCCTTCCTCTCCGAGGTCGCTATTCCCGATCCCTCTCGCCTCCATCCTCTGGCTGGTTTGAACCAGGAT ACCCTCGACTACCTCTCCCTCGATGACACTGCCCTTGACGAACTCCCCGGCTCCCGATCAGTGTTGCCATCCCGT GGATGGTCAGATGACCTTTGTTATGGTGCCGGTACTACCTATCTCGTTGCACTCGCTACTGGAGGCGCGTGGGGA CTTGTAGAAGGATTGAAAAAGACACCACCCACGGCAGCACCCAAAATTCGACTCAACGGTGTACTCAACTCCGTT ACCCGTCGCGGTCCGTTCCTCGGAAACTCGGCTGGTGTTGTAGCTATGGTTTACAACGGATTCAACTCCAGCCTC GGATATGTGCGAGGCAAGCATGACGCGACTAACAGCATCGTGGCCGGCGCATTGAGCGGCATGGTCTTCAAGAGC ACGCGTGGACTTAAGCCAATGATGATCTCTGGCGGCATTGTGGCTACCATTGCTGGTGCCTGGGCTGTATGTATA TTGCTGTGATATGCTGCCTGATTTTTGCTAACCTCGATCCTACAGGTGACCCGAAGGGCCTTCTTCTAG |