© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9329.t1 |
| Gene name | |
| Location | scaffold_45:91289..92404 |
| Strand | + |
| Gene length (bp) | 1115 |
| Transcript length (bp) | 999 |
| Coding sequence length (bp) | 999 |
| Protein length (aa) | 333 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 35 | 57 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 36.87 | 19.23 | 54.50 |
| 5d_25C | Five days - 25 degrees Celsius | 30.64 | 15.22 | 46.06 |
| 7d_25C | Seven days - 25 degrees Celsius | 28.78 | 14.13 | 43.44 |
| 10d_25C | Ten days - 25 degrees Celsius | 24.19 | 11.25 | 37.14 |
| 7d_15C | Seven days - 15 degrees Celsius | 33.56 | 17.01 | 50.11 |
| 7d_30C | Seven days - 30 degrees Celsius | 32.24 | 16.02 | 48.45 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.570248 | no |
| 3d_25C | 7d_25C | 0.412549 | no |
| 3d_25C | 7d_15C | 0.796074 | no |
| 3d_25C | 7d_30C | 0.705863 | no |
| 3d_25C | 10d_25C | 0.150824 | no |
| 5d_25C | 7d_25C | 0.880610 | no |
| 5d_25C | 7d_15C | 0.813222 | no |
| 5d_25C | 7d_30C | 0.906703 | no |
| 5d_25C | 10d_25C | 0.495223 | no |
| 7d_25C | 7d_15C | 0.655325 | no |
| 7d_25C | 7d_30C | 0.767240 | no |
| 7d_25C | 10d_25C | 0.632307 | no |
| 7d_15C | 7d_30C | 0.925584 | no |
| 7d_15C | 10d_25C | 0.288933 | no |
| 7d_30C | 10d_25C | 0.379689 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9329.t1 MERYSQFRDRGSGIAPFLPIPVEPLGLQTPLRIFLFCFRLPLFIFVTLSYFLILQWLPIGSLGKKAALWCILGVP SIWWIDLQVDGVRKGSLKQQQARLPQPGSVIASSFTSPIDAVYLAAIFDPIFTASYPNTRQVERISLFQAILRAF ASPATQPAPGALMVDVSSLVEKYPNRPIVLFPECTTTNGRGILTLSNSLLSVPPKTKIFPVSLRYTPMDIVTPLP GSYMSLLWTLLSKPTHCIRVRIAECITRSQNAIDTAPSLATAKSTYNTNYLDTLDRDGQELASSSEKALLDNVGE SLARLGRVKRVGLGVKEKQEFSRAWSKSRRTW* |
| Coding | >Pro_DTO377G3_2|g9329.t1 ATGGAGAGATACTCACAGTTTCGGGATCGAGGCTCGGGAATTGCACCCTTCCTCCCGATCCCCGTTGAACCACTC GGCCTCCAAACGCCTCTTCGCATTTTCCTTTTCTGCTTCCGCCTCCCGCTATTTATTTTCGTCACTCTTAGCTAT TTTTTGATCCTACAATGGCTTCCTATCGGATCGCTGGGCAAAAAGGCTGCTTTGTGGTGTATACTTGGAGTTCCC AGCATCTGGTGGATTGACCTTCAAGTGGACGGAGTGCGCAAAGGGTCTTTGAAACAGCAGCAAGCACGTCTGCCT CAACCCGGCTCTGTCATCGCCTCGTCCTTCACATCACCTATTGATGCCGTGTACCTGGCGGCTATCTTCGACCCG ATCTTCACAGCATCCTACCCCAACACTCGCCAGGTCGAGCGCATCTCTCTGTTCCAAGCCATACTGCGAGCCTTC GCTTCCCCCGCAACGCAACCGGCCCCTGGTGCCCTGATGGTGGATGTCTCAAGCTTGGTCGAGAAGTACCCCAAC AGACCGATTGTATTGTTCCCAGAGTGTACCACCACCAACGGCCGTGGCATCTTGACCTTGAGCAACTCCCTTCTC AGCGTACCTCCCAAGACCAAGATCTTCCCCGTTAGTCTGCGCTATACGCCTATGGATATCGTGACCCCCCTCCCT GGGAGCTATATGAGCTTGCTGTGGACGCTTCTTAGCAAGCCGACCCACTGCATCAGAGTGCGCATCGCGGAGTGC ATCACAAGAAGCCAAAATGCCATTGATACGGCTCCCTCTCTGGCGACTGCGAAGTCGACCTATAATACGAATTAC CTGGACACACTGGACCGGGACGGGCAAGAACTGGCATCGTCCAGCGAGAAGGCGCTCCTGGATAATGTGGGCGAG TCGCTCGCCCGTCTTGGTCGGGTTAAGCGGGTTGGCTTGGGGGTGAAAGAGAAGCAGGAATTTTCTCGAGCTTGG AGTAAGAGTCGTCGGACATGGTGA |
| Transcript | >Pro_DTO377G3_2|g9329.t1 ATGGAGAGATACTCACAGTTTCGGGATCGAGGCTCGGGAATTGCACCCTTCCTCCCGATCCCCGTTGAACCACTC GGCCTCCAAACGCCTCTTCGCATTTTCCTTTTCTGCTTCCGCCTCCCGCTATTTATTTTCGTCACTCTTAGCTAT TTTTTGATCCTACAATGGCTTCCTATCGGATCGCTGGGCAAAAAGGCTGCTTTGTGGTGTATACTTGGAGTTCCC AGCATCTGGTGGATTGACCTTCAAGTGGACGGAGTGCGCAAAGGGTCTTTGAAACAGCAGCAAGCACGTCTGCCT CAACCCGGCTCTGTCATCGCCTCGTCCTTCACATCACCTATTGATGCCGTGTACCTGGCGGCTATCTTCGACCCG ATCTTCACAGCATCCTACCCCAACACTCGCCAGGTCGAGCGCATCTCTCTGTTCCAAGCCATACTGCGAGCCTTC GCTTCCCCCGCAACGCAACCGGCCCCTGGTGCCCTGATGGTGGATGTCTCAAGCTTGGTCGAGAAGTACCCCAAC AGACCGATTGTATTGTTCCCAGAGTGTACCACCACCAACGGCCGTGGCATCTTGACCTTGAGCAACTCCCTTCTC AGCGTACCTCCCAAGACCAAGATCTTCCCCGTTAGTCTGCGCTATACGCCTATGGATATCGTGACCCCCCTCCCT GGGAGCTATATGAGCTTGCTGTGGACGCTTCTTAGCAAGCCGACCCACTGCATCAGAGTGCGCATCGCGGAGTGC ATCACAAGAAGCCAAAATGCCATTGATACGGCTCCCTCTCTGGCGACTGCGAAGTCGACCTATAATACGAATTAC CTGGACACACTGGACCGGGACGGGCAAGAACTGGCATCGTCCAGCGAGAAGGCGCTCCTGGATAATGTGGGCGAG TCGCTCGCCCGTCTTGGTCGGGTTAAGCGGGTTGGCTTGGGGGTGAAAGAGAAGCAGGAATTTTCTCGAGCTTGG AGTAAGAGTCGTCGGACATGGTGA |
| Gene | >Pro_DTO377G3_2|g9329.t1 ATGGAGAGATACTCACAGTTTCGGGATCGAGGTAAATTTGCGCTGTGCTAACCAGCCCCCAAGTCCAGTTATACT GACATCTCTAGGCTCGGGAATTGCACCCTTCCTCCCGATCCCCGTTGAACCACTCGGCCTCCAAACGCCTCTTCG CATTTTCCTTTTCTGCTTCCGCCTCCCGCTATTTATTTTCGTCACTCTTAGCTATTTTTTGATCCTACAATGGCT TCCTATCGGATCGCTGGGCAAAAAGGCTGCTTTGTGGTGTATACTTGGAGTTCCCAGCATCTGGTGGATTGACCT TCAAGTGGACGGAGTGCGCAAAGGGTTCGTGCTGCACCATCGAAACTATAGCCTGTTCTGCTGGTAACTAAAATA TCCGGCACAGGTCTTTGAAACAGCAGCAAGCACGTCTGCCTCAACCCGGCTCTGTCATCGCCTCGTCCTTCACAT CACCTATTGATGCCGTGTACCTGGCGGCTATCTTCGACCCGATCTTCACAGCATCCTACCCCAACACTCGCCAGG TCGAGCGCATCTCTCTGTTCCAAGCCATACTGCGAGCCTTCGCTTCCCCCGCAACGCAACCGGCCCCTGGTGCCC TGATGGTGGATGTCTCAAGCTTGGTCGAGAAGTACCCCAACAGACCGATTGTATTGTTCCCAGAGTGTACCACCA CCAACGGCCGTGGCATCTTGACCTTGAGCAACTCCCTTCTCAGCGTACCTCCCAAGACCAAGATCTTCCCCGTTA GTCTGCGCTATACGCCTATGGATATCGTGACCCCCCTCCCTGGGAGCTATATGAGCTTGCTGTGGACGCTTCTTA GCAAGCCGACCCACTGCATCAGAGTGCGCATCGCGGAGTGCATCACAAGAAGCCAAAATGCCATTGATACGGCTC CCTCTCTGGCGACTGCGAAGTCGACCTATAATACGAATTACCTGGACACACTGGACCGGGACGGGCAAGAACTGG CATCGTCCAGCGAGAAGGCGCTCCTGGATAATGTGGGCGAGTCGCTCGCCCGTCTTGGTCGGGTTAAGCGGGTTG GCTTGGGGGTGAAAGAGAAGCAGGAATTTTCTCGAGCTTGGAGTAAGAGTCGTCGGACATGGTGA |