© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9326.t1 |
| Gene name | |
| Location | scaffold_45:84832..85650 |
| Strand | + |
| Gene length (bp) | 818 |
| Transcript length (bp) | 750 |
| Coding sequence length (bp) | 750 |
| Protein length (aa) | 250 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00808 | CBFD_NFYB_HMF | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 1.0E-15 | 137 | 200 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Histone-like TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 91.37 | 52.79 | 129.95 |
| 5d_25C | Five days - 25 degrees Celsius | 105.93 | 62.36 | 149.50 |
| 7d_25C | Seven days - 25 degrees Celsius | 103.86 | 61.02 | 146.70 |
| 10d_25C | Ten days - 25 degrees Celsius | 137.36 | 82.85 | 191.87 |
| 7d_15C | Seven days - 15 degrees Celsius | 59.70 | 31.49 | 87.91 |
| 7d_30C | Seven days - 30 degrees Celsius | 140.25 | 84.81 | 195.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.599256 | no |
| 3d_25C | 7d_25C | 0.658791 | no |
| 3d_25C | 7d_15C | 0.085222 | no |
| 3d_25C | 7d_30C | 0.048648 | yes |
| 3d_25C | 10d_25C | 0.070025 | no |
| 5d_25C | 7d_25C | 0.958460 | no |
| 5d_25C | 7d_15C | 0.013513 | yes |
| 5d_25C | 7d_30C | 0.227602 | no |
| 5d_25C | 10d_25C | 0.288602 | no |
| 7d_25C | 7d_15C | 0.016924 | yes |
| 7d_25C | 7d_30C | 0.187430 | no |
| 7d_25C | 10d_25C | 0.243542 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.952757 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9326.t1 MTENNYRPRSPDLSLPPPQQYALASPITSHESPFFNSYQPHQRPILSRVGQQYVPPYQPDSDMARRSSRLAQSDR TPIPEPMPEAILPIPEAIQPIPEAIQPTPEPIAMAPVPAIAPEIEEEMPPAPPSAAIEVKTKFPVARIKRIMQAD EDVGKVAQVTPIAVSKALELFMISLVTKAAQEAKDRNSKRVTASHLKQAVAKDEVLDFLADIISKIPDQPASRKH EDDGSDQNEGRRKRGGRRPKDESD* |
| Coding | >Pro_DTO377G3_2|g9326.t1 ATGACAGAGAACAATTATCGGCCTCGCTCTCCTGATCTATCTCTTCCTCCTCCTCAACAATACGCGCTTGCGAGT CCAATTACATCCCACGAATCTCCCTTCTTCAACTCATACCAACCTCACCAACGCCCAATTCTAAGTCGCGTGGGT CAACAATACGTTCCACCTTATCAGCCAGACTCGGACATGGCTCGCCGTTCTAGCCGTCTTGCTCAGTCCGACCGT ACCCCCATCCCAGAACCCATGCCCGAGGCAATTCTACCAATCCCAGAGGCAATCCAACCAATCCCAGAGGCAATC CAACCAACCCCAGAGCCGATCGCAATGGCGCCGGTCCCCGCTATTGCGCCGGAGATAGAGGAAGAGATGCCACCG GCGCCTCCGAGTGCGGCGATTGAAGTAAAGACCAAGTTTCCCGTGGCGCGCATCAAGCGCATCATGCAGGCCGAT GAGGATGTCGGCAAGGTTGCTCAAGTGACACCGATTGCTGTGTCCAAGGCTCTCGAACTCTTCATGATCTCTCTT GTCACCAAGGCGGCACAAGAAGCAAAGGACCGCAACTCAAAGCGCGTCACGGCCTCGCATCTCAAACAGGCCGTC GCCAAGGATGAAGTGCTTGACTTCTTGGCTGACATCATCTCCAAGATCCCTGATCAACCCGCCAGTCGCAAACAC GAAGACGACGGGAGCGATCAAAATGAGGGTCGCCGTAAGCGTGGCGGGCGGCGACCGAAGGATGAAAGTGATTGA |
| Transcript | >Pro_DTO377G3_2|g9326.t1 ATGACAGAGAACAATTATCGGCCTCGCTCTCCTGATCTATCTCTTCCTCCTCCTCAACAATACGCGCTTGCGAGT CCAATTACATCCCACGAATCTCCCTTCTTCAACTCATACCAACCTCACCAACGCCCAATTCTAAGTCGCGTGGGT CAACAATACGTTCCACCTTATCAGCCAGACTCGGACATGGCTCGCCGTTCTAGCCGTCTTGCTCAGTCCGACCGT ACCCCCATCCCAGAACCCATGCCCGAGGCAATTCTACCAATCCCAGAGGCAATCCAACCAATCCCAGAGGCAATC CAACCAACCCCAGAGCCGATCGCAATGGCGCCGGTCCCCGCTATTGCGCCGGAGATAGAGGAAGAGATGCCACCG GCGCCTCCGAGTGCGGCGATTGAAGTAAAGACCAAGTTTCCCGTGGCGCGCATCAAGCGCATCATGCAGGCCGAT GAGGATGTCGGCAAGGTTGCTCAAGTGACACCGATTGCTGTGTCCAAGGCTCTCGAACTCTTCATGATCTCTCTT GTCACCAAGGCGGCACAAGAAGCAAAGGACCGCAACTCAAAGCGCGTCACGGCCTCGCATCTCAAACAGGCCGTC GCCAAGGATGAAGTGCTTGACTTCTTGGCTGACATCATCTCCAAGATCCCTGATCAACCCGCCAGTCGCAAACAC GAAGACGACGGGAGCGATCAAAATGAGGGTCGCCGTAAGCGTGGCGGGCGGCGACCGAAGGATGAAAGTGATTGA |
| Gene | >Pro_DTO377G3_2|g9326.t1 ATGACAGAGAACAATTATCGGCCTCGCTCTCCTGATCTATCTCTTCCTCCTCCTCAACAATACGCGCTTGCGAGT CCAATTACATCCCACGAATCTCCCTTCTTCAACTCATACCAACCTCACCAACGCCCAATTCTAAGTCGCGTGGGT CAACAATACGTTCCACCTTATCAGCCAGACTCGGACATGGCTCGCCGTTCTAGCCGTCTTGCTCAGTCCGACCGT ACCCCCATCCCAGAACCCATGCCCGAGGCAATTCTACCAATCCCAGAGGCAATCCAACCAATCCCAGAGGCAATC CAACCAACCCCAGAGCCGATCGCAATGGCGCCGGTCCCCGCTATTGCGCCGGAGATAGAGGAAGAGATGCCACCG GCGCCTCCGAGTGCGGCGATTGAAGTAAAGACCAAGTTTCCCGTGGCGCGCATCAAGCGCATCATGCAGGCCGAT GAGGATGTCGGCAAGGTTGCTCAAGTGACACCGATTGCTGTGTGTATGTACGCCCTTTGCGCTCCCCTTATTACC AATCTGCCAGAGATACTGACCAGACTCTTTTGATAGCCAAGGCTCTCGAACTCTTCATGATCTCTCTTGTCACCA AGGCGGCACAAGAAGCAAAGGACCGCAACTCAAAGCGCGTCACGGCCTCGCATCTCAAACAGGCCGTCGCCAAGG ATGAAGTGCTTGACTTCTTGGCTGACATCATCTCCAAGATCCCTGATCAACCCGCCAGTCGCAAACACGAAGACG ACGGGAGCGATCAAAATGAGGGTCGCCGTAAGCGTGGCGGGCGGCGACCGAAGGATGAAAGTGATTGA |