© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9321.t1 |
| Gene name | |
| Location | scaffold_45:71738..73368 |
| Strand | + |
| Gene length (bp) | 1630 |
| Transcript length (bp) | 1566 |
| Coding sequence length (bp) | 1566 |
| Protein length (aa) | 522 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01008 | IF-2B | Initiation factor 2 subunit family | 2.7E-20 | 242 | 498 |
| PF00293 | NUDIX | NUDIX domain | 3.0E-11 | 6 | 132 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0044237 | cellular metabolic process | Yes |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1213.23 | 616.53 | 1809.94 |
| 5d_25C | Five days - 25 degrees Celsius | 1810.06 | 856.08 | 2764.04 |
| 7d_25C | Seven days - 25 degrees Celsius | 1625.50 | 762.19 | 2488.81 |
| 10d_25C | Ten days - 25 degrees Celsius | 1630.43 | 789.96 | 2470.90 |
| 7d_15C | Seven days - 15 degrees Celsius | 1846.20 | 792.17 | 2900.22 |
| 7d_30C | Seven days - 30 degrees Celsius | 1331.84 | 625.48 | 2038.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.164348 | no |
| 3d_25C | 7d_25C | 0.338641 | no |
| 3d_25C | 7d_15C | 0.163348 | no |
| 3d_25C | 7d_30C | 0.813328 | no |
| 3d_25C | 10d_25C | 0.328484 | no |
| 5d_25C | 7d_25C | 0.786825 | no |
| 5d_25C | 7d_15C | 0.968710 | no |
| 5d_25C | 7d_30C | 0.342594 | no |
| 5d_25C | 10d_25C | 0.789864 | no |
| 7d_25C | 7d_15C | 0.756533 | no |
| 7d_25C | 7d_30C | 0.577859 | no |
| 7d_25C | 10d_25C | 0.994324 | no |
| 7d_15C | 7d_30C | 0.318308 | no |
| 7d_15C | 10d_25C | 0.750298 | no |
| 7d_30C | 10d_25C | 0.555836 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9321.t1 MKSLKPRSVVSSFICSNAGEPKIAIFRRSDKVSTYQHHLAPISGSIESPESPLAAAWRELREETTLTSRDMELWR QGKAFTFSDPSVGRQWTIFPFLYRLKDCSEGGRGEAGLQIDWEHEGWQWYSPDAIQDDDKFGGVPHLKESFRRVW FEVDMNDGASKALITGLKQLKADHQSGSHELTSIALRAYRDVIAQMHEDIDTQWWENARMAAWHLWKNGRESMGA ATLNAFLGLLADMEVIIHENLDSTVKRERLLALIDQHLDKRKEMPMRIKHSFATYLESKFLSTTRSRPTPSLVIL TLSSSSTIRDSIIEAFASLPIPNLDLRILESRPLCEGVNMASSILSAFKTRFPSSSDRHLKLTVYTDASAALASK DVDFILLGADRISDSGSVSNKTGSLPAVLSAKHVCPAAKVLVLSELEKVAEPDAESNRSQEENDPKELVGCWVEY GIKGLNAIAEGIDADRDNTNYTVEVKNIYFEWVPAELIEAYICEEGTLDATAIQEKAQQVKQKADRYFGQL* |
| Coding | >Pro_DTO377G3_2|g9321.t1 ATGAAGTCCTTGAAGCCAAGATCAGTGGTATCCTCTTTCATCTGCTCAAATGCAGGAGAACCCAAAATTGCCATT TTTCGGCGAAGTGATAAAGTCAGCACATATCAGCACCACCTCGCTCCCATCTCGGGCAGTATAGAAAGTCCCGAA AGTCCACTAGCAGCAGCATGGCGGGAGCTGAGAGAGGAGACTACTCTCACCTCACGAGATATGGAGCTTTGGCGA CAGGGAAAGGCATTCACATTCAGTGATCCCTCTGTCGGTCGACAATGGACCATTTTCCCGTTCCTATACCGACTC AAAGACTGCAGTGAAGGTGGCCGCGGCGAGGCGGGTCTTCAAATTGACTGGGAGCATGAAGGCTGGCAGTGGTAT AGTCCCGACGCAATCCAAGACGATGACAAGTTTGGTGGCGTACCACATCTGAAAGAAAGCTTTCGACGAGTCTGG TTCGAAGTTGACATGAATGATGGCGCTAGCAAGGCACTGATAACTGGCCTGAAACAGCTAAAGGCAGATCATCAG AGCGGATCGCACGAGCTGACCTCGATTGCGCTGCGGGCCTACCGAGATGTTATTGCGCAGATGCACGAGGATATT GACACGCAGTGGTGGGAGAATGCTCGCATGGCTGCATGGCATCTGTGGAAAAATGGACGAGAAAGCATGGGGGCA GCCACCTTGAATGCATTTCTCGGATTGCTGGCCGACATGGAAGTTATCATACATGAGAATCTCGACTCCACGGTC AAACGGGAACGCTTGTTGGCTTTGATCGACCAGCATTTGGACAAGCGCAAGGAGATGCCCATGCGCATCAAGCAC TCCTTTGCGACCTATCTTGAATCCAAGTTCTTGTCTACAACACGCTCCAGGCCTACGCCCTCTCTCGTTATTCTC ACCCTCTCGTCGAGCTCTACCATCCGGGACAGCATCATAGAAGCCTTCGCGTCTCTTCCAATTCCTAATCTGGAT CTTCGCATACTGGAATCTCGTCCGCTTTGCGAGGGTGTCAATATGGCATCTTCCATCCTCTCTGCCTTCAAAACA AGATTTCCCTCATCTTCCGATCGGCATCTCAAATTAACTGTGTACACCGATGCATCCGCCGCTCTTGCCAGCAAG GACGTAGATTTCATCCTGCTAGGGGCAGATCGGATCTCGGATTCAGGCTCAGTGAGCAATAAAACTGGATCTTTG CCAGCTGTTCTGAGTGCCAAGCATGTCTGTCCTGCCGCCAAAGTCTTGGTTCTCAGTGAGCTGGAGAAAGTGGCC GAGCCTGACGCCGAGAGCAATCGGAGCCAGGAAGAGAATGATCCAAAAGAGCTGGTGGGCTGCTGGGTGGAATAT GGCATCAAAGGACTTAATGCTATTGCTGAGGGAATTGATGCTGATCGAGATAACACAAACTACACAGTTGAAGTT AAGAATATTTACTTCGAATGGGTTCCGGCTGAACTCATAGAAGCGTATATCTGTGAAGAGGGGACTTTGGACGCC ACTGCTATTCAAGAGAAGGCTCAACAAGTAAAGCAAAAGGCGGACAGATACTTTGGTCAACTTTGA |
| Transcript | >Pro_DTO377G3_2|g9321.t1 ATGAAGTCCTTGAAGCCAAGATCAGTGGTATCCTCTTTCATCTGCTCAAATGCAGGAGAACCCAAAATTGCCATT TTTCGGCGAAGTGATAAAGTCAGCACATATCAGCACCACCTCGCTCCCATCTCGGGCAGTATAGAAAGTCCCGAA AGTCCACTAGCAGCAGCATGGCGGGAGCTGAGAGAGGAGACTACTCTCACCTCACGAGATATGGAGCTTTGGCGA CAGGGAAAGGCATTCACATTCAGTGATCCCTCTGTCGGTCGACAATGGACCATTTTCCCGTTCCTATACCGACTC AAAGACTGCAGTGAAGGTGGCCGCGGCGAGGCGGGTCTTCAAATTGACTGGGAGCATGAAGGCTGGCAGTGGTAT AGTCCCGACGCAATCCAAGACGATGACAAGTTTGGTGGCGTACCACATCTGAAAGAAAGCTTTCGACGAGTCTGG TTCGAAGTTGACATGAATGATGGCGCTAGCAAGGCACTGATAACTGGCCTGAAACAGCTAAAGGCAGATCATCAG AGCGGATCGCACGAGCTGACCTCGATTGCGCTGCGGGCCTACCGAGATGTTATTGCGCAGATGCACGAGGATATT GACACGCAGTGGTGGGAGAATGCTCGCATGGCTGCATGGCATCTGTGGAAAAATGGACGAGAAAGCATGGGGGCA GCCACCTTGAATGCATTTCTCGGATTGCTGGCCGACATGGAAGTTATCATACATGAGAATCTCGACTCCACGGTC AAACGGGAACGCTTGTTGGCTTTGATCGACCAGCATTTGGACAAGCGCAAGGAGATGCCCATGCGCATCAAGCAC TCCTTTGCGACCTATCTTGAATCCAAGTTCTTGTCTACAACACGCTCCAGGCCTACGCCCTCTCTCGTTATTCTC ACCCTCTCGTCGAGCTCTACCATCCGGGACAGCATCATAGAAGCCTTCGCGTCTCTTCCAATTCCTAATCTGGAT CTTCGCATACTGGAATCTCGTCCGCTTTGCGAGGGTGTCAATATGGCATCTTCCATCCTCTCTGCCTTCAAAACA AGATTTCCCTCATCTTCCGATCGGCATCTCAAATTAACTGTGTACACCGATGCATCCGCCGCTCTTGCCAGCAAG GACGTAGATTTCATCCTGCTAGGGGCAGATCGGATCTCGGATTCAGGCTCAGTGAGCAATAAAACTGGATCTTTG CCAGCTGTTCTGAGTGCCAAGCATGTCTGTCCTGCCGCCAAAGTCTTGGTTCTCAGTGAGCTGGAGAAAGTGGCC GAGCCTGACGCCGAGAGCAATCGGAGCCAGGAAGAGAATGATCCAAAAGAGCTGGTGGGCTGCTGGGTGGAATAT GGCATCAAAGGACTTAATGCTATTGCTGAGGGAATTGATGCTGATCGAGATAACACAAACTACACAGTTGAAGTT AAGAATATTTACTTCGAATGGGTTCCGGCTGAACTCATAGAAGCGTATATCTGTGAAGAGGGGACTTTGGACGCC ACTGCTATTCAAGAGAAGGCTCAACAAGTAAAGCAAAAGGCGGACAGATACTTTGGTCAACTTTGA |
| Gene | >Pro_DTO377G3_2|g9321.t1 ATGAAGTCCTTGAAGCCAAGATCAGTGGTATCCTCTTTCATCTGCTCAAATGCAGGAGAACCCAAAATTGCCATT TTTCGGCGAAGTGATAAAGTCAGCACATATCAGTATGTATCCTCAAGTCCCGCTTTACTATAAATTACTGTAGTC CAGATGAACTGATTTCTCTAGGCACCACCTCGCTCCCATCTCGGGCAGTATAGAAAGTCCCGAAAGTCCACTAGC AGCAGCATGGCGGGAGCTGAGAGAGGAGACTACTCTCACCTCACGAGATATGGAGCTTTGGCGACAGGGAAAGGC ATTCACATTCAGTGATCCCTCTGTCGGTCGACAATGGACCATTTTCCCGTTCCTATACCGACTCAAAGACTGCAG TGAAGGTGGCCGCGGCGAGGCGGGTCTTCAAATTGACTGGGAGCATGAAGGCTGGCAGTGGTATAGTCCCGACGC AATCCAAGACGATGACAAGTTTGGTGGCGTACCACATCTGAAAGAAAGCTTTCGACGAGTCTGGTTCGAAGTTGA CATGAATGATGGCGCTAGCAAGGCACTGATAACTGGCCTGAAACAGCTAAAGGCAGATCATCAGAGCGGATCGCA CGAGCTGACCTCGATTGCGCTGCGGGCCTACCGAGATGTTATTGCGCAGATGCACGAGGATATTGACACGCAGTG GTGGGAGAATGCTCGCATGGCTGCATGGCATCTGTGGAAAAATGGACGAGAAAGCATGGGGGCAGCCACCTTGAA TGCATTTCTCGGATTGCTGGCCGACATGGAAGTTATCATACATGAGAATCTCGACTCCACGGTCAAACGGGAACG CTTGTTGGCTTTGATCGACCAGCATTTGGACAAGCGCAAGGAGATGCCCATGCGCATCAAGCACTCCTTTGCGAC CTATCTTGAATCCAAGTTCTTGTCTACAACACGCTCCAGGCCTACGCCCTCTCTCGTTATTCTCACCCTCTCGTC GAGCTCTACCATCCGGGACAGCATCATAGAAGCCTTCGCGTCTCTTCCAATTCCTAATCTGGATCTTCGCATACT GGAATCTCGTCCGCTTTGCGAGGGTGTCAATATGGCATCTTCCATCCTCTCTGCCTTCAAAACAAGATTTCCCTC ATCTTCCGATCGGCATCTCAAATTAACTGTGTACACCGATGCATCCGCCGCTCTTGCCAGCAAGGACGTAGATTT CATCCTGCTAGGGGCAGATCGGATCTCGGATTCAGGCTCAGTGAGCAATAAAACTGGATCTTTGCCAGCTGTTCT GAGTGCCAAGCATGTCTGTCCTGCCGCCAAAGTCTTGGTTCTCAGTGAGCTGGAGAAAGTGGCCGAGCCTGACGC CGAGAGCAATCGGAGCCAGGAAGAGAATGATCCAAAAGAGCTGGTGGGCTGCTGGGTGGAATATGGCATCAAAGG ACTTAATGCTATTGCTGAGGGAATTGATGCTGATCGAGATAACACAAACTACACAGTTGAAGTTAAGAATATTTA CTTCGAATGGGTTCCGGCTGAACTCATAGAAGCGTATATCTGTGAAGAGGGGACTTTGGACGCCACTGCTATTCA AGAGAAGGCTCAACAAGTAAAGCAAAAGGCGGACAGATACTTTGGTCAACTTTGA |