© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g9312.t1 |
| Gene name | |
| Location | scaffold_45:55400..56771 |
| Strand | - |
| Gene length (bp) | 1371 |
| Transcript length (bp) | 1194 |
| Coding sequence length (bp) | 1194 |
| Protein length (aa) | 398 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00891 | Methyltransf_2 | O-methyltransferase domain | 1.7E-17 | 178 | 374 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008171 | O-methyltransferase activity | Yes |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| GO:0008168 | methyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 23.69 | 11.89 | 35.49 |
| 5d_25C | Five days - 25 degrees Celsius | 4.24 | 0.85 | 7.64 |
| 7d_25C | Seven days - 25 degrees Celsius | 14.95 | 6.39 | 23.51 |
| 10d_25C | Ten days - 25 degrees Celsius | 9.43 | 2.92 | 15.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.82 | 0.69 | 6.96 |
| 7d_30C | Seven days - 30 degrees Celsius | 14.96 | 6.57 | 23.35 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.134199 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.133708 | no |
| 3d_25C | 10d_25C | 0.006742 | yes |
| 5d_25C | 7d_25C | 0.002297 | yes |
| 5d_25C | 7d_15C | 0.880723 | no |
| 5d_25C | 7d_30C | 0.002297 | yes |
| 5d_25C | 10d_25C | 0.063693 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.998423 | no |
| 7d_25C | 10d_25C | 0.212099 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.029770 | yes |
| 7d_30C | 10d_25C | 0.210858 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9312.t1 MTITTPFQCLVSRLGQMALKEALEPSPQAHFELLRVIDELRSAVETPTETVLRLIYQPPQNAALRVVIDLGIFAM LVEKRHRGTGLSAAQLAEYTGAERDLIVRLMRVMASLGLCVTPTPELYVANEKTVALTQPIGRDGIPCIYDLTFP TLSKLPEYLRSHGYANPQDYTQSPMQWAVGQSQFEWLSSHAQQQELFNSYMASRREGRPMWYDIYPVGRLFGHAV PYKDTVFLVDIGGNQGHDLGKFRREYGHLPGRMVLQDLPSVIEGVEAESAGIEVMGYNFMDPQPVKGARAYYFRS IFHDWDDHISRKILRNTVTAMAPDYSRILIVDFVLPDTDTPLMQASLDIQMMSIGAGVERSERQWRDLLHSAGLE ITGIWNQSPAMESVIEAVPMLK* |
| Coding | >Pro_DTO377G3_2|g9312.t1 ATGACGATCACCACACCCTTTCAATGTTTGGTCAGCCGTCTCGGCCAAATGGCTCTGAAAGAAGCCTTGGAGCCA TCGCCACAAGCCCACTTTGAGCTATTACGAGTGATCGACGAGCTGAGGTCTGCAGTGGAAACGCCGACGGAGACC GTGTTGCGTCTGATCTACCAGCCTCCTCAAAATGCTGCATTGCGCGTTGTCATTGATTTGGGAATTTTCGCCATG CTTGTGGAGAAGCGGCACAGAGGAACGGGGCTTTCAGCCGCTCAGCTGGCAGAATACACGGGCGCTGAGCGTGAT TTAATTGTCCGACTGATGCGTGTCATGGCTTCTCTTGGGCTGTGCGTCACACCGACTCCCGAGCTCTATGTTGCC AATGAGAAGACGGTGGCACTCACTCAGCCGATTGGGAGAGATGGAATCCCATGCATATATGATCTTACCTTTCCA ACCCTGAGCAAACTTCCGGAGTATCTGCGCTCCCACGGCTATGCCAATCCCCAGGATTATACTCAGTCGCCTATG CAATGGGCCGTTGGTCAGAGTCAGTTTGAGTGGCTTTCGAGTCATGCCCAGCAGCAGGAGCTCTTCAACTCGTAC ATGGCTAGTCGTCGCGAGGGTAGACCGATGTGGTACGATATATACCCCGTCGGACGACTGTTTGGCCATGCCGTG CCATACAAAGATACCGTCTTCCTAGTAGACATTGGTGGCAACCAGGGGCATGATCTGGGCAAGTTCCGCCGGGAA TATGGCCATCTGCCTGGCAGAATGGTACTGCAGGATTTACCAAGCGTGATCGAAGGGGTCGAGGCAGAGAGTGCA GGAATCGAGGTGATGGGATACAATTTCATGGATCCTCAACCGGTCAAAGGTGCCCGTGCGTACTACTTTCGCTCT ATCTTCCACGACTGGGATGACCATATCAGTCGCAAGATCCTCCGCAATACGGTGACAGCAATGGCGCCGGACTAT TCTCGGATTCTCATTGTGGATTTCGTCCTGCCAGACACCGATACGCCGCTGATGCAGGCCTCCCTAGATATTCAG ATGATGAGTATAGGAGCTGGTGTCGAGCGGTCAGAGCGACAGTGGAGAGATCTCTTGCATAGTGCCGGCCTGGAA ATCACGGGGATTTGGAACCAGAGTCCGGCGATGGAATCGGTGATTGAAGCGGTTCCAATGTTAAAATAG |
| Transcript | >Pro_DTO377G3_2|g9312.t1 ATGACGATCACCACACCCTTTCAATGTTTGGTCAGCCGTCTCGGCCAAATGGCTCTGAAAGAAGCCTTGGAGCCA TCGCCACAAGCCCACTTTGAGCTATTACGAGTGATCGACGAGCTGAGGTCTGCAGTGGAAACGCCGACGGAGACC GTGTTGCGTCTGATCTACCAGCCTCCTCAAAATGCTGCATTGCGCGTTGTCATTGATTTGGGAATTTTCGCCATG CTTGTGGAGAAGCGGCACAGAGGAACGGGGCTTTCAGCCGCTCAGCTGGCAGAATACACGGGCGCTGAGCGTGAT TTAATTGTCCGACTGATGCGTGTCATGGCTTCTCTTGGGCTGTGCGTCACACCGACTCCCGAGCTCTATGTTGCC AATGAGAAGACGGTGGCACTCACTCAGCCGATTGGGAGAGATGGAATCCCATGCATATATGATCTTACCTTTCCA ACCCTGAGCAAACTTCCGGAGTATCTGCGCTCCCACGGCTATGCCAATCCCCAGGATTATACTCAGTCGCCTATG CAATGGGCCGTTGGTCAGAGTCAGTTTGAGTGGCTTTCGAGTCATGCCCAGCAGCAGGAGCTCTTCAACTCGTAC ATGGCTAGTCGTCGCGAGGGTAGACCGATGTGGTACGATATATACCCCGTCGGACGACTGTTTGGCCATGCCGTG CCATACAAAGATACCGTCTTCCTAGTAGACATTGGTGGCAACCAGGGGCATGATCTGGGCAAGTTCCGCCGGGAA TATGGCCATCTGCCTGGCAGAATGGTACTGCAGGATTTACCAAGCGTGATCGAAGGGGTCGAGGCAGAGAGTGCA GGAATCGAGGTGATGGGATACAATTTCATGGATCCTCAACCGGTCAAAGGTGCCCGTGCGTACTACTTTCGCTCT ATCTTCCACGACTGGGATGACCATATCAGTCGCAAGATCCTCCGCAATACGGTGACAGCAATGGCGCCGGACTAT TCTCGGATTCTCATTGTGGATTTCGTCCTGCCAGACACCGATACGCCGCTGATGCAGGCCTCCCTAGATATTCAG ATGATGAGTATAGGAGCTGGTGTCGAGCGGTCAGAGCGACAGTGGAGAGATCTCTTGCATAGTGCCGGCCTGGAA ATCACGGGGATTTGGAACCAGAGTCCGGCGATGGAATCGGTGATTGAAGCGGTTCCAATGTTAAAATAG |
| Gene | >Pro_DTO377G3_2|g9312.t1 ATGACGATCACCACACCCTTTCAATGTTTGGTCAGCCGTCTCGGCCAAATGGCTCTGAAAGAAGCCTTGGAGCCA TCGCCACAAGCCCACTTTGAGCTATTACGAGTGATCGACGAGCTGAGGTCTGCAGTGGAAACGCCGACGGAGACC GTGTTGCGTCTGATCTACCAGGTGAGGCGTTCCACGGACCAAAACTGACTTCTCATTCTGACTGGACTATAGCCT CCTCAAAATGCTGCATTGCGCGTTGTCATTGATTTGGGAATTTTCGCCATGCTTGTGGAGAAGCGGCACAGAGGA ACGGGGCTTTCAGCCGCTCAGCTGGCAGAATACACGGGCGCTGAGCGTGATTTAATTGGTACTTTTTCCTGCAAT ATCATTAGTTCGTCACACATTGTGATTCGGCTAACTCCGTGAATTAGTCCGACTGATGCGTGTCATGGCTTCTCT TGGGCTGTGCGTCACACCGACTCCCGAGCTCTATGTTGCCAATGAGAAGACGGTGGCACTCACTCAGCCGATTGG GAGAGATGGAATCCCATGCATGTATGTGATGTGGCTTGGTGGCTTGCGTCTCTTCGCGCCGTTACTCACTGACCC TTGTTTAGATATGATCTTACCTTTCCAACCCTGAGCAAACTTCCGGAGTATCTGCGCTCCCACGGCTATGCCAAT CCCCAGGATTATACTCAGTCGCCTATGCAATGGGCCGTTGGTCAGAGTCAGTTTGAGTGGCTTTCGAGTCATGCC CAGCAGCAGGAGCTCTTCAACTCGTACATGGCTAGTCGTCGCGAGGGTAGACCGATGTGGTACGATATATACCCC GTCGGACGACTGTTTGGCCATGCCGTGCCATACAAAGATACCGTCTTCCTAGTAGACATTGGTGGCAACCAGGGG CATGATCTGGGCAAGTTCCGCCGGGAATATGGCCATCTGCCTGGCAGAATGGTACTGCAGGATTTACCAAGCGTG ATCGAAGGGGTCGAGGCAGAGAGTGCAGGAATCGAGGTGATGGGATACAATTTCATGGATCCTCAACCGGTCAAA GGTGCCCGTGCGTACTACTTTCGCTCTATCTTCCACGACTGGGATGACCATATCAGTCGCAAGATCCTCCGCAAT ACGGTGACAGCAATGGCGCCGGACTATTCTCGGATTCTCATTGTGGATTTCGTCCTGCCAGACACCGATACGCCG CTGATGCAGGCCTCCCTAGATATTCAGATGATGAGTATAGGAGCTGGTGTCGAGCGGTCAGAGCGACAGTGGAGA GATCTCTTGCATAGTGCCGGCCTGGAAATCACGGGGATTTGGAACCAGAGTCCGGCGATGGAATCGGTGATTGAA GCGGTTCCAATGTTAAAATAG |