© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9310.t1 |
| Gene name | |
| Location | scaffold_45:50736..52270 |
| Strand | - |
| Gene length (bp) | 1534 |
| Transcript length (bp) | 1419 |
| Coding sequence length (bp) | 1419 |
| Protein length (aa) | 473 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.3E-16 | 65 | 408 |
| PF05978 | UNC-93 | Ion channel regulatory protein UNC-93 | 1.1E-11 | 78 | 262 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 33 | 55 | 22 |
| 2 | 65 | 87 | 22 |
| 3 | 94 | 111 | 17 |
| 4 | 121 | 143 | 22 |
| 5 | 156 | 178 | 22 |
| 6 | 193 | 215 | 22 |
| 7 | 241 | 263 | 22 |
| 8 | 283 | 305 | 22 |
| 9 | 312 | 334 | 22 |
| 10 | 349 | 368 | 19 |
| 11 | 375 | 397 | 22 |
| 12 | 422 | 444 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.34 | 1.74 | 8.94 |
| 5d_25C | Five days - 25 degrees Celsius | 7.77 | 2.96 | 12.59 |
| 7d_25C | Seven days - 25 degrees Celsius | 6.75 | 2.44 | 11.06 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.65 | 3.26 | 14.04 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.12 | 2.14 | 10.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 10.39 | 4.36 | 16.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.352239 | no |
| 3d_25C | 7d_25C | 0.608026 | no |
| 3d_25C | 7d_15C | 0.790053 | no |
| 3d_25C | 7d_30C | 0.054411 | no |
| 3d_25C | 10d_25C | 0.205039 | no |
| 5d_25C | 7d_25C | 0.759770 | no |
| 5d_25C | 7d_15C | 0.566826 | no |
| 5d_25C | 7d_30C | 0.443173 | no |
| 5d_25C | 10d_25C | 0.824657 | no |
| 7d_25C | 7d_15C | 0.851490 | no |
| 7d_25C | 7d_30C | 0.236449 | no |
| 7d_25C | 10d_25C | 0.559644 | no |
| 7d_15C | 7d_30C | 0.117768 | no |
| 7d_15C | 10d_25C | 0.371818 | no |
| 7d_30C | 10d_25C | 0.665276 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9310.t1 MSNQSVEEGRVAGTHNENRSTLFKIWTDSWFQISLISFICFCCPGMYNALSGLGGSGQVNQTVAANATVALLACT AGTALFVVGPIFDRVGPRVCLLLGGWTYALYSGSLLCFNSTNNGAFVIASGALLGVGASFLWVAQGAIMTTYVPE SHKGRAIAVFWIIFNLGGGVGSLASFGINFKSTSGTVSDSTYIALLTIMAFGWALGVFICPPSYVKGAQLQITPE SEKNFRHILRHAILTICNWRVLCILPLFFSANVFYSYQQNAVNGMNFNIRTRSLNGALYWIAQMLGGLVMGLILD FPGLNRPMRARIAWVFLFVTGMGIWGGGYKFQLWSTARLDKGLKQDIDYTQGSISVGPMFLYIFYGAYDALWQSF CYWIVGAQSNSPATSAVLVGAYKTFQSVGGAMAWRINAMKKPAMTQFAMDWGLCMGSLVIAIPTVLAITLTSDVE TIAVEEKDFPEMKEPEAEVVKS* |
| Coding | >Pro_DTO377G3_2|g9310.t1 ATGTCGAACCAATCAGTCGAAGAAGGGCGTGTCGCCGGCACCCACAATGAGAATCGCTCTACCTTGTTCAAGATC TGGACCGATTCTTGGTTCCAGATCAGCTTGATCAGTTTCATCTGCTTCTGCTGCCCGGGAATGTACAATGCTCTC AGCGGTCTTGGTGGTTCCGGTCAAGTTAACCAGACCGTCGCTGCAAATGCGACTGTAGCTCTCCTGGCCTGTACT GCCGGAACTGCACTCTTCGTTGTCGGCCCTATCTTCGATCGTGTGGGACCCAGAGTTTGTCTCTTGCTCGGAGGA TGGACTTATGCATTGTATTCCGGCAGTCTTCTGTGTTTCAACTCAACCAACAATGGTGCATTTGTGATTGCCTCC GGTGCCCTTCTCGGTGTTGGCGCATCATTCTTGTGGGTGGCACAGGGCGCCATCATGACTACCTATGTGCCCGAA TCACACAAGGGTCGCGCAATCGCAGTCTTCTGGATTATCTTCAACCTCGGTGGTGGCGTTGGATCTCTCGCTAGT TTCGGCATCAATTTCAAGTCGACGAGCGGCACTGTTAGCGACTCAACGTACATCGCCTTACTTACCATCATGGCC TTCGGATGGGCCCTGGGAGTATTCATTTGCCCGCCATCGTATGTCAAAGGTGCCCAATTGCAGATCACACCGGAG AGCGAAAAGAACTTCCGCCACATTCTTCGCCATGCCATCCTGACTATCTGCAACTGGCGGGTGTTGTGTATCCTG CCGCTCTTCTTCTCCGCCAATGTTTTCTACTCCTACCAGCAGAATGCTGTGAATGGTATGAACTTTAATATCCGG ACGCGTTCGCTCAACGGCGCGCTTTATTGGATTGCGCAGATGCTGGGTGGTCTCGTCATGGGTCTCATTCTCGAC TTCCCGGGTCTGAACCGACCCATGCGCGCTCGCATCGCCTGGGTATTCTTGTTCGTCACTGGAATGGGCATCTGG GGTGGTGGTTATAAGTTCCAGTTGTGGTCTACTGCCCGTCTGGATAAGGGCCTGAAGCAGGATATCGATTACACA CAGGGTAGCATCTCAGTGGGCCCGATGTTCCTCTACATCTTCTACGGTGCTTATGATGCGCTGTGGCAATCATTC TGCTACTGGATCGTGGGCGCTCAGTCCAATTCCCCCGCTACATCGGCCGTTCTGGTCGGAGCGTACAAGACCTTC CAGAGTGTTGGTGGTGCAATGGCGTGGCGTATCAATGCCATGAAGAAACCCGCGATGACCCAATTCGCTATGGAC TGGGGCCTTTGCATGGGCTCATTGGTTATCGCTATCCCAACCGTCCTGGCTATCACTCTGACCAGTGATGTAGAA ACAATCGCCGTCGAGGAGAAGGACTTCCCAGAGATGAAGGAGCCCGAGGCCGAGGTGGTGAAGTCTTGA |
| Transcript | >Pro_DTO377G3_2|g9310.t1 ATGTCGAACCAATCAGTCGAAGAAGGGCGTGTCGCCGGCACCCACAATGAGAATCGCTCTACCTTGTTCAAGATC TGGACCGATTCTTGGTTCCAGATCAGCTTGATCAGTTTCATCTGCTTCTGCTGCCCGGGAATGTACAATGCTCTC AGCGGTCTTGGTGGTTCCGGTCAAGTTAACCAGACCGTCGCTGCAAATGCGACTGTAGCTCTCCTGGCCTGTACT GCCGGAACTGCACTCTTCGTTGTCGGCCCTATCTTCGATCGTGTGGGACCCAGAGTTTGTCTCTTGCTCGGAGGA TGGACTTATGCATTGTATTCCGGCAGTCTTCTGTGTTTCAACTCAACCAACAATGGTGCATTTGTGATTGCCTCC GGTGCCCTTCTCGGTGTTGGCGCATCATTCTTGTGGGTGGCACAGGGCGCCATCATGACTACCTATGTGCCCGAA TCACACAAGGGTCGCGCAATCGCAGTCTTCTGGATTATCTTCAACCTCGGTGGTGGCGTTGGATCTCTCGCTAGT TTCGGCATCAATTTCAAGTCGACGAGCGGCACTGTTAGCGACTCAACGTACATCGCCTTACTTACCATCATGGCC TTCGGATGGGCCCTGGGAGTATTCATTTGCCCGCCATCGTATGTCAAAGGTGCCCAATTGCAGATCACACCGGAG AGCGAAAAGAACTTCCGCCACATTCTTCGCCATGCCATCCTGACTATCTGCAACTGGCGGGTGTTGTGTATCCTG CCGCTCTTCTTCTCCGCCAATGTTTTCTACTCCTACCAGCAGAATGCTGTGAATGGTATGAACTTTAATATCCGG ACGCGTTCGCTCAACGGCGCGCTTTATTGGATTGCGCAGATGCTGGGTGGTCTCGTCATGGGTCTCATTCTCGAC TTCCCGGGTCTGAACCGACCCATGCGCGCTCGCATCGCCTGGGTATTCTTGTTCGTCACTGGAATGGGCATCTGG GGTGGTGGTTATAAGTTCCAGTTGTGGTCTACTGCCCGTCTGGATAAGGGCCTGAAGCAGGATATCGATTACACA CAGGGTAGCATCTCAGTGGGCCCGATGTTCCTCTACATCTTCTACGGTGCTTATGATGCGCTGTGGCAATCATTC TGCTACTGGATCGTGGGCGCTCAGTCCAATTCCCCCGCTACATCGGCCGTTCTGGTCGGAGCGTACAAGACCTTC CAGAGTGTTGGTGGTGCAATGGCGTGGCGTATCAATGCCATGAAGAAACCCGCGATGACCCAATTCGCTATGGAC TGGGGCCTTTGCATGGGCTCATTGGTTATCGCTATCCCAACCGTCCTGGCTATCACTCTGACCAGTGATGTAGAA ACAATCGCCGTCGAGGAGAAGGACTTCCCAGAGATGAAGGAGCCCGAGGCCGAGGTGGTGAAGTCTTGA |
| Gene | >Pro_DTO377G3_2|g9310.t1 ATGTCGAACCAATCAGTCGAAGAAGGGCGTGTCGCCGGCACCCACAATGAGAATCGCTCTACCTTGTTCAAGATC TGGACCGATTCTTGGTTCCAGATCAGCTTGATCAGTTTCATCTGCTTCTGCTGCCCGGGAGTGAGTTTGGCAAGG ACTGGTAGTCCAAGTTCCAAGAACTAACAATGCTATTAGATGTACAATGCTCTCAGCGGTCTTGGTGGTTCCGGT CAAGTTAACCAGACCGTCGCTGCAAATGCGACTGTAGCTCTCCTGGCCTGTACTGCCGGAACTGCACTCTTCGTT GTCGGCCCTATCTTCGATCGTGTGGGACCCAGAGTTTGTCTCTTGCTCGGAGGATGGACTTATGCATTGTATTCC GGCAGTCTTCTGTGTTTCAACTGTATGATCAGCTTCTAATCTGCACTGCCGTTGTATACACAGCTAACGTATACT TCCAACAGCAACCAACAATGGTGCATTTGTGATTGCCTCCGGTGCCCTTCTCGGTGTTGGCGCATCATTCTTGTG GGTGGCACAGGGCGCCATCATGACTACCTATGTGCCCGAATCACACAAGGGTCGCGCAATCGCAGTCTTCTGGAT TATCTTCAACCTCGGTGGTGGCGTTGGATCTCTCGCTAGTTTCGGCATCAATTTCAAGTCGACGAGCGGCACTGT TAGCGACTCAACGTACATCGCCTTACTTACCATCATGGCCTTCGGATGGGCCCTGGGAGTATTCATTTGCCCGCC ATCGTATGTCAAAGGTGCCCAATTGCAGATCACACCGGAGAGCGAAAAGAACTTCCGCCACATTCTTCGCCATGC CATCCTGACTATCTGCAACTGGCGGGTGTTGTGTATCCTGCCGCTCTTCTTCTCCGCCAATGTTTTCTACTCCTA CCAGCAGAATGCTGTGAATGGTATGAACTTTAATATCCGGACGCGTTCGCTCAACGGCGCGCTTTATTGGATTGC GCAGATGCTGGGTGGTCTCGTCATGGGTCTCATTCTCGACTTCCCGGGTCTGAACCGACCCATGCGCGCTCGCAT CGCCTGGGTATTCTTGTTCGTCACTGGAATGGGCATCTGGGGTGGTGGTTATAAGTTCCAGTTGTGGTCTACTGC CCGTCTGGATAAGGGCCTGAAGCAGGATATCGATTACACACAGGGTAGCATCTCAGTGGGCCCGATGTTCCTCTA CATCTTCTACGGTGCTTATGATGCGCTGTGGCAATCATTCTGCTACTGGATCGTGGGCGCTCAGTCCAATTCCCC CGCTACATCGGCCGTTCTGGTCGGAGCGTACAAGACCTTCCAGAGTGTTGGTGGTGCAATGGCGTGGCGTATCAA TGCCATGAAGAAACCCGCGATGACCCAATTCGCTATGGACTGGGGCCTTTGCATGGGCTCATTGGTTATCGCTAT CCCAACCGTCCTGGCTATCACTCTGACCAGTGATGTAGAAACAATCGCCGTCGAGGAGAAGGACTTCCCAGAGAT GAAGGAGCCCGAGGCCGAGGTGGTGAAGTCTTGA |