© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g931.t1 |
| Gene name | |
| Location | scaffold_01:2468334..2470297 |
| Strand | + |
| Gene length (bp) | 1963 |
| Transcript length (bp) | 1908 |
| Coding sequence length (bp) | 1908 |
| Protein length (aa) | 636 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13738 | Pyr_redox_3 | Pyridine nucleotide-disulphide oxidoreductase | 1.3E-16 | 218 | 421 |
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 2.6E-11 | 216 | 422 |
| PF00743 | FMO-like | Flavin-binding monooxygenase-like | 1.0E-10 | 269 | 425 |
| PF13434 | Lys_Orn_oxgnase | L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase | 5.4E-06 | 306 | 420 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 2.2E-05 | 219 | 253 |
| PF01494 | FAD_binding_3 | FAD binding domain | 3.9E-05 | 216 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004499 | N,N-dimethylaniline monooxygenase activity | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 39.29 | 23.54 | 55.04 |
| 5d_25C | Five days - 25 degrees Celsius | 19.26 | 10.35 | 28.18 |
| 7d_25C | Seven days - 25 degrees Celsius | 17.81 | 9.39 | 26.23 |
| 10d_25C | Ten days - 25 degrees Celsius | 26.46 | 15.07 | 37.84 |
| 7d_15C | Seven days - 15 degrees Celsius | 39.65 | 23.78 | 55.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 43.18 | 25.63 | 60.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.001278 | yes |
| 3d_25C | 7d_15C | 0.980865 | no |
| 3d_25C | 7d_30C | 0.755395 | no |
| 3d_25C | 10d_25C | 0.083080 | no |
| 5d_25C | 7d_25C | 0.832152 | no |
| 5d_25C | 7d_15C | 0.002297 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.220632 | no |
| 7d_25C | 7d_15C | 0.001278 | yes |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.117102 | no |
| 7d_15C | 7d_30C | 0.784544 | no |
| 7d_15C | 10d_25C | 0.073459 | no |
| 7d_30C | 10d_25C | 0.025128 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g931.t1 MASADIQQNIPSHIRGVPGSVNIPVASFPVPSKCATCEPEHVASTLVEAFNLALAKRDFNGIANLFGDNGFWRDH LALTWQLRTVQGHEAIVKFLERSSESRDGLRLKKISIDRSTPVRAPKVWSLDGAGEVQGIQFFFKAETSHGSATG IARLALQNHTWKIFTLFTGLQELKGHEELLGRRRPKGAEHGGNPDRKNWAEKRADSAAYTDGREPSVLIIGGGQG GLTAAARLKMLGVDSLIIDKNESVGDNWRLRYRQLVLHDPVWYDHMPYMEFPATWPIFTPKDKLAEFFECYVKML ELNVWTTTTITNCEWNEKTANWTVTLSRKQKDGTTEERVFHPRHIIQATGHSGKMKMPEVPGVDGFQGDLLCHSS QFPGAKRNSQGKKAIVVGSCNSAHDIAQDYQERGYDITMVQRSTTCIISSTAITKIGLKGLYEEDGPALADADLL LHGTPTPVMKALQIHITSQEAEHDKELLEGLEKAGFKVDRGPNGGGLFVKYFQRGGGYYIDVGASQMIVDGKIKV KQGQEIAEILPRGLKFADGTELEADEIIFATGYDNMRSQTRTMLGDKVADKVSDVWGYNNEGEIRTMWQNSGHPG FYFHGGNLATARYYSKILALQIKALEEGIYNHGEF* |
| Coding | >Pro_DTO377G3_2|g931.t1 ATGGCCAGCGCAGACATCCAGCAGAATATCCCCTCGCACATCCGTGGAGTGCCCGGCTCAGTCAACATACCAGTA GCAAGCTTCCCAGTTCCCTCCAAGTGTGCCACATGTGAACCAGAACACGTTGCATCGACACTTGTTGAGGCTTTC AACCTTGCCTTGGCCAAACGTGACTTCAACGGCATCGCCAACTTATTCGGAGACAATGGCTTCTGGCGCGACCAT CTAGCTCTGACCTGGCAGCTTCGAACAGTGCAAGGCCACGAAGCGATCGTGAAATTCCTTGAGAGATCTTCCGAG TCCAGGGACGGCCTGCGACTCAAGAAAATCTCTATTGACAGAAGCACCCCCGTTCGCGCCCCGAAAGTGTGGTCA CTTGATGGAGCTGGCGAAGTTCAAGGTATCCAATTTTTCTTCAAGGCAGAGACATCCCATGGCTCTGCGACCGGA ATCGCCCGCCTCGCGCTGCAGAACCACACGTGGAAAATATTCACCTTGTTCACTGGTCTTCAAGAGCTCAAGGGC CATGAGGAGCTTCTTGGACGTCGGAGGCCCAAGGGCGCAGAGCACGGTGGTAACCCGGATCGCAAGAATTGGGCC GAAAAAAGAGCCGACTCTGCTGCTTACACTGACGGTCGCGAGCCAAGTGTGCTGATTATCGGCGGCGGACAGGGC GGTTTGACCGCAGCTGCGAGATTAAAGATGCTCGGAGTGGACTCCCTCATCATCGATAAAAACGAGTCCGTCGGG GATAACTGGCGACTCCGATACCGTCAGCTTGTCCTGCACGATCCCGTGTGGTACGATCACATGCCCTACATGGAG TTCCCAGCGACTTGGCCTATCTTCACCCCGAAGGATAAGCTGGCTGAATTCTTCGAGTGCTACGTCAAAATGCTC GAACTCAATGTTTGGACCACAACCACTATCACCAATTGCGAATGGAATGAGAAGACTGCCAACTGGACCGTGACC CTTTCTCGCAAACAGAAGGACGGTACCACTGAAGAGAGAGTGTTCCACCCGCGCCATATCATCCAAGCGACCGGT CATTCCGGAAAGATGAAGATGCCTGAAGTCCCCGGCGTGGACGGCTTCCAGGGTGACCTTCTTTGTCACTCCTCG CAATTCCCAGGTGCCAAGAGAAACAGCCAAGGCAAAAAGGCTATCGTTGTGGGCTCATGCAATTCCGCCCACGAT ATTGCACAAGATTATCAAGAGAGAGGCTACGATATCACTATGGTCCAGAGATCCACAACCTGCATTATCTCCTCA ACTGCCATCACAAAGATCGGTCTGAAGGGCCTTTACGAAGAGGATGGTCCCGCATTGGCAGATGCCGATCTCCTT CTCCATGGCACTCCCACACCAGTTATGAAAGCGCTTCAGATCCATATCACTTCCCAAGAAGCAGAGCATGATAAG GAGCTTCTCGAGGGGCTTGAAAAGGCAGGATTCAAGGTTGATCGTGGTCCAAATGGCGGCGGACTCTTCGTCAAA TATTTCCAGCGCGGTGGCGGCTACTATATCGACGTCGGAGCCTCCCAAATGATCGTGGATGGCAAGATCAAGGTG AAGCAAGGCCAGGAGATTGCTGAAATTCTGCCTCGAGGCCTCAAATTTGCCGATGGCACTGAGCTCGAAGCCGAT GAGATTATCTTCGCTACTGGATACGACAATATGCGCTCGCAAACAAGGACGATGCTGGGCGACAAGGTCGCTGAT AAGGTGTCTGATGTTTGGGGCTACAATAACGAAGGAGAAATTAGGACCATGTGGCAGAATAGTGGGCACCCAGGA TTCTACTTCCATGGAGGCAATCTGGCGACTGCAAGATACTATTCTAAGATTCTGGCACTCCAGATCAAGGCTCTT GAGGAAGGTATCTATAACCATGGTGAATTCTAA |
| Transcript | >Pro_DTO377G3_2|g931.t1 ATGGCCAGCGCAGACATCCAGCAGAATATCCCCTCGCACATCCGTGGAGTGCCCGGCTCAGTCAACATACCAGTA GCAAGCTTCCCAGTTCCCTCCAAGTGTGCCACATGTGAACCAGAACACGTTGCATCGACACTTGTTGAGGCTTTC AACCTTGCCTTGGCCAAACGTGACTTCAACGGCATCGCCAACTTATTCGGAGACAATGGCTTCTGGCGCGACCAT CTAGCTCTGACCTGGCAGCTTCGAACAGTGCAAGGCCACGAAGCGATCGTGAAATTCCTTGAGAGATCTTCCGAG TCCAGGGACGGCCTGCGACTCAAGAAAATCTCTATTGACAGAAGCACCCCCGTTCGCGCCCCGAAAGTGTGGTCA CTTGATGGAGCTGGCGAAGTTCAAGGTATCCAATTTTTCTTCAAGGCAGAGACATCCCATGGCTCTGCGACCGGA ATCGCCCGCCTCGCGCTGCAGAACCACACGTGGAAAATATTCACCTTGTTCACTGGTCTTCAAGAGCTCAAGGGC CATGAGGAGCTTCTTGGACGTCGGAGGCCCAAGGGCGCAGAGCACGGTGGTAACCCGGATCGCAAGAATTGGGCC GAAAAAAGAGCCGACTCTGCTGCTTACACTGACGGTCGCGAGCCAAGTGTGCTGATTATCGGCGGCGGACAGGGC GGTTTGACCGCAGCTGCGAGATTAAAGATGCTCGGAGTGGACTCCCTCATCATCGATAAAAACGAGTCCGTCGGG GATAACTGGCGACTCCGATACCGTCAGCTTGTCCTGCACGATCCCGTGTGGTACGATCACATGCCCTACATGGAG TTCCCAGCGACTTGGCCTATCTTCACCCCGAAGGATAAGCTGGCTGAATTCTTCGAGTGCTACGTCAAAATGCTC GAACTCAATGTTTGGACCACAACCACTATCACCAATTGCGAATGGAATGAGAAGACTGCCAACTGGACCGTGACC CTTTCTCGCAAACAGAAGGACGGTACCACTGAAGAGAGAGTGTTCCACCCGCGCCATATCATCCAAGCGACCGGT CATTCCGGAAAGATGAAGATGCCTGAAGTCCCCGGCGTGGACGGCTTCCAGGGTGACCTTCTTTGTCACTCCTCG CAATTCCCAGGTGCCAAGAGAAACAGCCAAGGCAAAAAGGCTATCGTTGTGGGCTCATGCAATTCCGCCCACGAT ATTGCACAAGATTATCAAGAGAGAGGCTACGATATCACTATGGTCCAGAGATCCACAACCTGCATTATCTCCTCA ACTGCCATCACAAAGATCGGTCTGAAGGGCCTTTACGAAGAGGATGGTCCCGCATTGGCAGATGCCGATCTCCTT CTCCATGGCACTCCCACACCAGTTATGAAAGCGCTTCAGATCCATATCACTTCCCAAGAAGCAGAGCATGATAAG GAGCTTCTCGAGGGGCTTGAAAAGGCAGGATTCAAGGTTGATCGTGGTCCAAATGGCGGCGGACTCTTCGTCAAA TATTTCCAGCGCGGTGGCGGCTACTATATCGACGTCGGAGCCTCCCAAATGATCGTGGATGGCAAGATCAAGGTG AAGCAAGGCCAGGAGATTGCTGAAATTCTGCCTCGAGGCCTCAAATTTGCCGATGGCACTGAGCTCGAAGCCGAT GAGATTATCTTCGCTACTGGATACGACAATATGCGCTCGCAAACAAGGACGATGCTGGGCGACAAGGTCGCTGAT AAGGTGTCTGATGTTTGGGGCTACAATAACGAAGGAGAAATTAGGACCATGTGGCAGAATAGTGGGCACCCAGGA TTCTACTTCCATGGAGGCAATCTGGCGACTGCAAGATACTATTCTAAGATTCTGGCACTCCAGATCAAGGCTCTT GAGGAAGGTATCTATAACCATGGTGAATTCTAA |
| Gene | >Pro_DTO377G3_2|g931.t1 ATGGCCAGCGCAGACATCCAGCAGAATATCCCCTCGCACATCCGTGGAGTGCCCGGCTCAGTCAACATACCAGTA GCAAGCTTCCCAGTTCCCTCCAAGTGTGCCACATGTGAACCAGAACACGTTGCATCGACACTTGTTGAGGCTTTC AACCTTGCCTTGGCCAAACGTGACTTCAACGGCATCGCCAACTTATTCGGAGACAATGGCTTCTGGCGCGACCAT CTAGCTCTGACCTGGCAGCTTCGAACAGTGCAAGGCCACGAAGCGATCGTGAAATTCCTTGAGAGATCTTCCGAG TCCAGGGACGGCCTGCGACTCAAGAAAATCTCTATTGACAGAAGCACCCCCGTTCGCGCCCCGAAAGTGTGGTCA CTTGATGGAGCTGGCGAAGTTCAAGGTATCCAATTTTTCTTCAAGGCAGAGACATCCCATGGCTCTGCGACCGGA ATCGCCCGCCTCGCGCTGCAGAACCACACGTGGAAAATATTCACCTTGTTCACTGGTCTTCAAGAGCTCAAGGGC CATGAGGAGCTTCTTGGACGTCGGAGGCCCAAGGGCGCAGAGCACGGTGGTAACCCGGATCGCAAGAATTGGGCC GAAAAAAGAGCCGACTCTGCTGCTTACACTGACGGTCGCGAGCCAAGTGTGCTGATTATCGGTAAGTTTCTATCT TTTCATCATTTTGAAGAACCCAGCTAATCCTTATTTCAAAGGCGGCGGACAGGGCGGTTTGACCGCAGCTGCGAG ATTAAAGATGCTCGGAGTGGACTCCCTCATCATCGATAAAAACGAGTCCGTCGGGGATAACTGGCGACTCCGATA CCGTCAGCTTGTCCTGCACGATCCCGTGTGGTACGATCACATGCCCTACATGGAGTTCCCAGCGACTTGGCCTAT CTTCACCCCGAAGGATAAGCTGGCTGAATTCTTCGAGTGCTACGTCAAAATGCTCGAACTCAATGTTTGGACCAC AACCACTATCACCAATTGCGAATGGAATGAGAAGACTGCCAACTGGACCGTGACCCTTTCTCGCAAACAGAAGGA CGGTACCACTGAAGAGAGAGTGTTCCACCCGCGCCATATCATCCAAGCGACCGGTCATTCCGGAAAGATGAAGAT GCCTGAAGTCCCCGGCGTGGACGGCTTCCAGGGTGACCTTCTTTGTCACTCCTCGCAATTCCCAGGTGCCAAGAG AAACAGCCAAGGCAAAAAGGCTATCGTTGTGGGCTCATGCAATTCCGCCCACGATATTGCACAAGATTATCAAGA GAGAGGCTACGATATCACTATGGTCCAGAGATCCACAACCTGCATTATCTCCTCAACTGCCATCACAAAGATCGG TCTGAAGGGCCTTTACGAAGAGGATGGTCCCGCATTGGCAGATGCCGATCTCCTTCTCCATGGCACTCCCACACC AGTTATGAAAGCGCTTCAGATCCATATCACTTCCCAAGAAGCAGAGCATGATAAGGAGCTTCTCGAGGGGCTTGA AAAGGCAGGATTCAAGGTTGATCGTGGTCCAAATGGCGGCGGACTCTTCGTCAAATATTTCCAGCGCGGTGGCGG CTACTATATCGACGTCGGAGCCTCCCAAATGATCGTGGATGGCAAGATCAAGGTGAAGCAAGGCCAGGAGATTGC TGAAATTCTGCCTCGAGGCCTCAAATTTGCCGATGGCACTGAGCTCGAAGCCGATGAGATTATCTTCGCTACTGG ATACGACAATATGCGCTCGCAAACAAGGACGATGCTGGGCGACAAGGTCGCTGATAAGGTGTCTGATGTTTGGGG CTACAATAACGAAGGAGAAATTAGGACCATGTGGCAGAATAGTGGGCACCCAGGATTCTACTTCCATGGAGGCAA TCTGGCGACTGCAAGATACTATTCTAAGATTCTGGCACTCCAGATCAAGGCTCTTGAGGAAGGTATCTATAACCA TGGTGAATTCTAA |