© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9296.t1 |
| Gene name | |
| Location | scaffold_45:14821..16394 |
| Strand | + |
| Gene length (bp) | 1573 |
| Transcript length (bp) | 1368 |
| Coding sequence length (bp) | 1368 |
| Protein length (aa) | 456 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03663 | Glyco_hydro_76 | Glycosyl hydrolase family 76 | 4.9E-144 | 34 | 398 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 431 | 453 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.71 | 0.20 | 3.23 |
| 5d_25C | Five days - 25 degrees Celsius | 0.59 | 0.00 | 1.27 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.39 | 0.00 | 0.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.43 | 0.00 | 0.99 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.74 | 0.25 | 3.23 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.48 | 0.00 | 1.04 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.088157 | no |
| 3d_25C | 7d_25C | 0.030863 | yes |
| 3d_25C | 7d_15C | 0.985311 | no |
| 3d_25C | 7d_30C | 0.040199 | yes |
| 3d_25C | 10d_25C | 0.048261 | yes |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 0.081084 | no |
| 5d_25C | 7d_30C | 1.000000 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.023923 | yes |
| 7d_25C | 7d_30C | 1.000000 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.037576 | yes |
| 7d_15C | 10d_25C | 0.042614 | yes |
| 7d_30C | 10d_25C | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9296.t1 MHFLGVSPFEGAVAALLLSGVARAIDLDISDEQSIKDAASTSTYAMMKYYYGNETGQIPGAFPDKWWEGAPLFMA LLEYWHFTGDTTYNEELSVGLQWQSGTDGDYMPSNYSSYLGNDDQMFWGLAAMTAAEFSFPDRSTGFSWLSLAQG VFNTQIKRWDTTSCGGGLRWQIWPYQSGYTMKNSISNGGLFQLSARLARYTGDAIYLQWANKIWEWSVSSPLLSN TTWNVADSTDVSNDCATQGNAQWTYNYGTYLMGAAYMYNYTNGTTQAQWLTAVNGLLNATIENFFLTGGVIEDYY CEPSETCNNNEVLFKGLTSTWLALTALLVPSTFDTILAKLQTSAKAAAASCTGHSNGTCGVRWYKSTWDGWMGME EEISVTKVFTANLINFNKTSPVTSTTGGNSTSNPTAGESDSDASSTTTTVTTGDRAGAGILTAVFVAGWIGLMAF MMLGG* |
| Coding | >Pro_DTO377G3_2|g9296.t1 ATGCACTTTCTCGGGGTGTCTCCCTTTGAAGGAGCTGTCGCTGCACTACTCCTTTCCGGCGTAGCACGCGCAATC GATTTGGATATTAGCGATGAACAATCGATCAAAGATGCCGCGAGTACCTCCACTTACGCTATGATGAAATATTAT TACGGCAACGAGACCGGTCAAATTCCTGGAGCCTTTCCAGACAAATGGTGGGAAGGAGCTCCACTTTTTATGGCC CTGTTAGAGTACTGGCATTTTACTGGCGACACGACATACAACGAGGAACTAAGTGTTGGATTGCAATGGCAATCA GGTACGGATGGGGACTATATGCCAAGCAACTACAGTTCTTACCTGGGGAACGATGATCAAATGTTCTGGGGTCTA GCGGCTATGACGGCCGCTGAGTTCTCATTTCCGGACCGATCGACTGGGTTCTCTTGGCTCTCTCTAGCTCAGGGT GTCTTCAATACCCAGATCAAAAGATGGGATACAACCTCTTGTGGCGGTGGTCTACGGTGGCAGATTTGGCCCTAC CAATCTGGATATACAATGAAAAATTCTATCTCCAATGGGGGGTTATTTCAGTTATCTGCACGTCTAGCCCGCTAC ACCGGAGATGCAATCTATCTGCAGTGGGCTAACAAGATCTGGGAATGGTCTGTCTCGTCACCTCTGCTAAGCAAC ACAACATGGAACGTTGCCGATTCCACCGATGTTAGTAATGATTGTGCGACCCAAGGAAACGCCCAATGGACATAT AACTACGGCACGTACCTGATGGGGGCGGCGTATATGTACAACTATACAAACGGTACTACCCAAGCTCAATGGCTG ACAGCAGTAAATGGCCTACTGAACGCGACAATTGAGAACTTTTTCCTCACGGGTGGGGTTATCGAAGACTATTAC TGCGAGCCTTCAGAAACCTGCAATAATAACGAGGTCCTTTTCAAAGGACTGACTTCCACATGGTTGGCATTGACT GCTCTCCTTGTTCCATCGACATTTGACACCATTCTCGCGAAGCTCCAAACATCGGCCAAGGCAGCCGCTGCATCC TGCACGGGCCACAGCAATGGCACTTGTGGTGTCCGGTGGTATAAGTCTACATGGGACGGGTGGATGGGAATGGAG GAAGAGATCAGTGTGACAAAAGTCTTCACGGCAAATCTGATCAACTTTAACAAGACTTCTCCGGTGACCTCGACC ACTGGCGGAAACAGTACCAGCAATCCAACGGCAGGTGAAAGTGACAGTGATGCTTCCAGTACAACGACTACAGTG ACAACCGGTGACAGGGCGGGCGCTGGCATCCTGACCGCTGTTTTTGTGGCTGGATGGATTGGACTCATGGCTTTC ATGATGCTTGGTGGTTGA |
| Transcript | >Pro_DTO377G3_2|g9296.t1 ATGCACTTTCTCGGGGTGTCTCCCTTTGAAGGAGCTGTCGCTGCACTACTCCTTTCCGGCGTAGCACGCGCAATC GATTTGGATATTAGCGATGAACAATCGATCAAAGATGCCGCGAGTACCTCCACTTACGCTATGATGAAATATTAT TACGGCAACGAGACCGGTCAAATTCCTGGAGCCTTTCCAGACAAATGGTGGGAAGGAGCTCCACTTTTTATGGCC CTGTTAGAGTACTGGCATTTTACTGGCGACACGACATACAACGAGGAACTAAGTGTTGGATTGCAATGGCAATCA GGTACGGATGGGGACTATATGCCAAGCAACTACAGTTCTTACCTGGGGAACGATGATCAAATGTTCTGGGGTCTA GCGGCTATGACGGCCGCTGAGTTCTCATTTCCGGACCGATCGACTGGGTTCTCTTGGCTCTCTCTAGCTCAGGGT GTCTTCAATACCCAGATCAAAAGATGGGATACAACCTCTTGTGGCGGTGGTCTACGGTGGCAGATTTGGCCCTAC CAATCTGGATATACAATGAAAAATTCTATCTCCAATGGGGGGTTATTTCAGTTATCTGCACGTCTAGCCCGCTAC ACCGGAGATGCAATCTATCTGCAGTGGGCTAACAAGATCTGGGAATGGTCTGTCTCGTCACCTCTGCTAAGCAAC ACAACATGGAACGTTGCCGATTCCACCGATGTTAGTAATGATTGTGCGACCCAAGGAAACGCCCAATGGACATAT AACTACGGCACGTACCTGATGGGGGCGGCGTATATGTACAACTATACAAACGGTACTACCCAAGCTCAATGGCTG ACAGCAGTAAATGGCCTACTGAACGCGACAATTGAGAACTTTTTCCTCACGGGTGGGGTTATCGAAGACTATTAC TGCGAGCCTTCAGAAACCTGCAATAATAACGAGGTCCTTTTCAAAGGACTGACTTCCACATGGTTGGCATTGACT GCTCTCCTTGTTCCATCGACATTTGACACCATTCTCGCGAAGCTCCAAACATCGGCCAAGGCAGCCGCTGCATCC TGCACGGGCCACAGCAATGGCACTTGTGGTGTCCGGTGGTATAAGTCTACATGGGACGGGTGGATGGGAATGGAG GAAGAGATCAGTGTGACAAAAGTCTTCACGGCAAATCTGATCAACTTTAACAAGACTTCTCCGGTGACCTCGACC ACTGGCGGAAACAGTACCAGCAATCCAACGGCAGGTGAAAGTGACAGTGATGCTTCCAGTACAACGACTACAGTG ACAACCGGTGACAGGGCGGGCGCTGGCATCCTGACCGCTGTTTTTGTGGCTGGATGGATTGGACTCATGGCTTTC ATGATGCTTGGTGGTTGA |
| Gene | >Pro_DTO377G3_2|g9296.t1 ATGCACTTTCTCGGGGTGTCTCCCTTTGAAGGAGCTGTCGCTGCACTACTCCTTTCCGGCGTAGCACGCGCAATC GATTTGGATATTAGCGATGAACGTACGTGGTGGAGTTGAGATTCCGCGCCTCCCCGGCCCATGTCAATTACCAGA GAAGTTAACTTTTGATCTCATAACAGAATCGATCAAAGATGCCGCGAGTACCTCCACTTACGCTATGATGAAATA TTATTACGGCAACGAGACCGGTCAAATTCCTGGAGCCTTTCCAGACAAATGGTGGGAAGGAGCTCCACTTTTTAT GGCCCTGTTAGAGTACTGGCATTTTACTGGCGACACGACATACAACGAGGAACTAAGTGTTGGATTGCAATGGCA ATCAGGTACGGATGGGGACTATATGCCAAGCAACTACAGTTCTTACCTGGTGAGCATCTTCAGAGTCTCAAAAGG CAACAATCTCTAATGCCGGGTATCTACCAGGGGAACGATGATCAAATGTTCTGGGGTCTAGCGGCTATGACGGCC GCTGAGTTCTCATTTCCGGACCGATCGACTGGGTTCTCTTGGCTCTCTCTAGCTCAGGGTGTCTTCAATACCCAG ATCAAAAGATGGGATACAACCTCTTGTGGCGGTGGTCTACGGTGGCAGATTTGGCCCTACCAATCTGGATATACA ATGAAAAATTCTATCTCCAATGGGGGGTTATTTCAGTTATCTGCACGTCTAGCCCGCTACACCGGAGATGCAATC TATCTGCAGTGGGCTAACAAGATCTGGGAATGGTCTGTCTCGTCACCTCTGCTAAGCAACACAACATGGAACGTT GCCGATTCCACCGATGTTAGTAATGATTGTGCGACCCAAGGAAACGCCCAATGGACATATAACTACGGCACGTAC CTGATGGGGGCGGCGTATATGTACAACTATGTGAGAAATGCCCTTTTCAAATTCATGTTGGCTTTGTTCAAGTAC GTGTACTAACCTCTACTGCCTACAGACAAACGGTACTACCCAAGCTCAATGGCTGACAGCAGTAAATGGCCTACT GAACGCGACAATTGAGAACTTTTTCCTCACGGGTGGGGTTATCGAAGACTATTACTGCGAGCCTTCAGAAACCTG CAATAATAACGAGGTCCTTTTCAAAGGACTGACTTCCACATGGTTGGCATTGACTGCTCTCCTTGTTCCATCGAC ATTTGACACCATTCTCGCGAAGCTCCAAACATCGGCCAAGGCAGCCGCTGCATCCTGCACGGGCCACAGCAATGG CACTTGTGGTGTCCGGTGGTATAAGTCTACATGGGACGGGTGGATGGGAATGGAGGAAGAGATCAGTGTGACAAA AGTCTTCACGGCAAATCTGATCAACTTTAACAAGACTTCTCCGGTGACCTCGACCACTGGCGGAAACAGTACCAG CAATCCAACGGCAGGTGAAAGTGACAGTGATGCTTCCAGTACAACGACTACAGTGACAACCGGTGACAGGGCGGG CGCTGGCATCCTGACCGCTGTTTTTGTGGCTGGATGGATTGGACTCATGGCTTTCATGATGCTTGGTGGTTGA |