Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g9276.t1
Gene name
Location	scaffold_44:106564..108149
Strand	+
Gene length (bp)	1585
Transcript length (bp)	1230
Coding sequence length (bp)	1230
Protein length (aa)	410

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00647	EF1G	Elongation factor 1 gamma, conserved domain	6.8E-42	247	353
PF00043	GST_C	Glutathione S-transferase, C-terminal domain	3.0E-15	96	201
PF02798	GST_N	Glutathione S-transferase, N-terminal domain	1.3E-10	4	79
PF13410	GST_C_2	Glutathione S-transferase, C-terminal domain	1.3E-09	131	195

GO

GO Term	Description	Terminal node
GO:0003746	translation elongation factor activity	Yes
GO:0006414	translational elongation	Yes
GO:0006749	glutathione metabolic process	Yes
GO:0005515	protein binding	Yes
GO:0044260	cellular macromolecule metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0005488	binding	No
GO:0034645	cellular macromolecule biosynthetic process	No
GO:0008152	metabolic process	No
GO:0003674	molecular_function	No
GO:0003676	nucleic acid binding	No
GO:0071704	organic substance metabolic process	No
GO:0008150	biological_process	No
GO:0045182	translation regulator activity	No
GO:0043603	cellular amide metabolic process	No
GO:0006518	peptide metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0009058	biosynthetic process	No
GO:0006790	sulfur compound metabolic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:0044249	cellular biosynthetic process	No
GO:0006575	cellular modified amino acid metabolic process	No
GO:0097159	organic cyclic compound binding	No
GO:1901363	heterocyclic compound binding	No
GO:0044237	cellular metabolic process	No
GO:1901564	organonitrogen compound metabolic process	No
GO:0009987	cellular process	No
GO:0008135	translation factor activity, RNA binding	No
GO:0009059	macromolecule biosynthetic process	No
GO:0090079	translation regulator activity, nucleic acid binding	No
GO:1901576	organic substance biosynthetic process	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	276.80	167.47	386.12
5d_25C	Five days - 25 degrees Celsius	234.63	142.68	326.58
7d_25C	Seven days - 25 degrees Celsius	227.08	137.95	316.21
10d_25C	Ten days - 25 degrees Celsius	209.35	127.39	291.30
7d_15C	Seven days - 15 degrees Celsius	284.11	171.86	396.35
7d_30C	Seven days - 30 degrees Celsius	233.26	140.77	325.75

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.518738	no
3d_25C	7d_25C	0.426589	no
3d_25C	7d_15C	0.939474	no
3d_25C	7d_30C	0.509965	no
3d_25C	10d_25C	0.224091	no
5d_25C	7d_25C	0.921209	no
5d_25C	7d_15C	0.435504	no
5d_25C	7d_30C	0.987027	no
5d_25C	10d_25C	0.681260	no
7d_25C	7d_15C	0.344967	no
7d_25C	7d_30C	0.936948	no
7d_25C	10d_25C	0.780583	no
7d_15C	7d_30C	0.438271	no
7d_15C	10d_25C	0.174937	no
7d_30C	10d_25C	0.703420	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g9276.t1 MAFGKLYGLPDNGRTISILVAAKHNDLDLELVNTQANSTAEFNTSAEYLKINPTGKIPAFEGANGFTLSEAIAIA VYVTSQNEKTTLLGKTKQDYASILRWLSFVNSEVLPKFGAWYRPLLGLDGYNKKTVDEASKVALKAISAFETHLT ANTYLVGERITLADIFAASLLTRAFATVLDKTWREANPATTRWYNTIINQDAFKAVVPSPKFAEEVVKYVAPKKE PKPKAAAPAAAAPVEASTAEPKAKHPLEALGKPTLILDDWKRKFSNEDPRTVAMPWFWEHFNADEYSLWKVNYRY NNELKLTFMANNLIGGFQTRLEASRKYLFGAQSVYGENYNCVVYGAYMTRGQEWEPAFTVGPDYEGYEFTKLDPS NEADRKLVEDMWSQDVPVTVDGQVKEWADGHVFK*
Coding	>Pro_DTO377G3_2\|g9276.t1 ATGGCATTCGGAAAGCTCTACGGTCTGCCTGACAACGGTCGCACCATCTCCATCCTGGTCGCTGCTAAGCACAAC GACCTCGACTTGGAGCTGGTTAACACCCAGGCCAACTCTACCGCTGAATTCAACACCAGCGCTGAGTACCTCAAG ATCAACCCCACTGGCAAGATCCCCGCCTTCGAGGGTGCCAATGGCTTCACTCTGTCTGAGGCTATTGCCATTGCC GTCTATGTTACCTCCCAGAACGAGAAGACCACCCTTCTCGGCAAGACCAAGCAGGATTACGCTTCCATCCTCCGC TGGTTGTCCTTCGTCAACTCCGAGGTTCTCCCCAAGTTCGGTGCCTGGTACCGTCCTTTGTTGGGTCTGGATGGT TACAACAAGAAGACTGTCGATGAGGCCTCCAAGGTTGCCCTGAAGGCCATCTCCGCCTTCGAGACTCACCTCACT GCCAACACCTACCTTGTTGGTGAGCGTATCACTCTGGCCGATATCTTCGCTGCCTCCCTCCTTACCCGTGCTTTC GCCACTGTCTTGGACAAGACCTGGCGCGAGGCCAACCCCGCCACCACCCGGTGGTACAACACTATTATCAACCAG GACGCCTTCAAGGCCGTCGTCCCCAGCCCCAAGTTCGCTGAGGAGGTCGTCAAGTACGTCGCCCCCAAGAAGGAG CCCAAGCCCAAGGCCGCTGCCCCCGCCGCTGCCGCCCCCGTCGAGGCCTCTACCGCTGAGCCTAAGGCTAAGCAC CCCCTTGAGGCTCTTGGCAAGCCCACTCTTATCCTCGATGACTGGAAGCGCAAGTTCTCCAACGAGGACCCCCGC ACCGTTGCCATGCCCTGGTTCTGGGAGCACTTCAACGCCGATGAGTACTCTCTCTGGAAGGTCAACTACCGTTAC AACAACGAGCTCAAGCTCACCTTCATGGCCAACAACTTGATCGGTGGCTTCCAGACTCGTCTCGAGGCTTCCCGC AAGTACCTCTTCGGTGCTCAGTCCGTTTACGGCGAGAACTACAACTGTGTCGTCTACGGTGCCTACATGACCCGC GGCCAGGAGTGGGAGCCCGCTTTCACTGTCGGCCCCGACTACGAGGGTTACGAGTTCACCAAGCTCGACCCCTCC AACGAGGCTGACCGCAAGCTCGTTGAGGACATGTGGTCCCAGGACGTTCCCGTCACTGTTGACGGCCAAGTTAAG GAGTGGGCCGATGGTCACGTCTTCAAATAA
Transcript	>Pro_DTO377G3_2\|g9276.t1 ATGGCATTCGGAAAGCTCTACGGTCTGCCTGACAACGGTCGCACCATCTCCATCCTGGTCGCTGCTAAGCACAAC GACCTCGACTTGGAGCTGGTTAACACCCAGGCCAACTCTACCGCTGAATTCAACACCAGCGCTGAGTACCTCAAG ATCAACCCCACTGGCAAGATCCCCGCCTTCGAGGGTGCCAATGGCTTCACTCTGTCTGAGGCTATTGCCATTGCC GTCTATGTTACCTCCCAGAACGAGAAGACCACCCTTCTCGGCAAGACCAAGCAGGATTACGCTTCCATCCTCCGC TGGTTGTCCTTCGTCAACTCCGAGGTTCTCCCCAAGTTCGGTGCCTGGTACCGTCCTTTGTTGGGTCTGGATGGT TACAACAAGAAGACTGTCGATGAGGCCTCCAAGGTTGCCCTGAAGGCCATCTCCGCCTTCGAGACTCACCTCACT GCCAACACCTACCTTGTTGGTGAGCGTATCACTCTGGCCGATATCTTCGCTGCCTCCCTCCTTACCCGTGCTTTC GCCACTGTCTTGGACAAGACCTGGCGCGAGGCCAACCCCGCCACCACCCGGTGGTACAACACTATTATCAACCAG GACGCCTTCAAGGCCGTCGTCCCCAGCCCCAAGTTCGCTGAGGAGGTCGTCAAGTACGTCGCCCCCAAGAAGGAG CCCAAGCCCAAGGCCGCTGCCCCCGCCGCTGCCGCCCCCGTCGAGGCCTCTACCGCTGAGCCTAAGGCTAAGCAC CCCCTTGAGGCTCTTGGCAAGCCCACTCTTATCCTCGATGACTGGAAGCGCAAGTTCTCCAACGAGGACCCCCGC ACCGTTGCCATGCCCTGGTTCTGGGAGCACTTCAACGCCGATGAGTACTCTCTCTGGAAGGTCAACTACCGTTAC AACAACGAGCTCAAGCTCACCTTCATGGCCAACAACTTGATCGGTGGCTTCCAGACTCGTCTCGAGGCTTCCCGC AAGTACCTCTTCGGTGCTCAGTCCGTTTACGGCGAGAACTACAACTGTGTCGTCTACGGTGCCTACATGACCCGC GGCCAGGAGTGGGAGCCCGCTTTCACTGTCGGCCCCGACTACGAGGGTTACGAGTTCACCAAGCTCGACCCCTCC AACGAGGCTGACCGCAAGCTCGTTGAGGACATGTGGTCCCAGGACGTTCCCGTCACTGTTGACGGCCAAGTTAAG GAGTGGGCCGATGGTCACGTCTTCAAATAA
Gene	>Pro_DTO377G3_2\|g9276.t1 ATGGCATTCGGAAAGCTCTACGGTCTGCCTGTATGTTTATCTTCGTCTTTGTTATTTTGATGCAATGTCTAATAT TTTCTAGGACAACGGTCGCACCATCTCCATCCTGGTCGCTGCTAAGCACAACGACCTCGACTTGGAGCTGGTTAA CACCCAGGCCAACTCTACCGCTGAATTCAACACCAGCGCTGAGTACCTCAAGATCAACCCCACTGGCAAGATCCC CGCCTTCGAGGGTGCCAATGGCTTCACTCTGTCTGAGGCTATTGCCATTGCCGTCTATGGTATGTGAAAATATCC TCCCTTTTATGCGTCACCACACACCCCTCGGTCCATTTTTATGCCTCTCTTCTTTATGATGAGACACCATTAGTT ATCCCTGTCTGAATTATAACTATTGTTATAACAACTGTTGAGAAAAAACAACTCTGAAAAAAATATTGGCTACCC CGCTCTGCGGGAAAATTTGGACTCGACCACCCCACTCTCTTTTTGAAATGGACATATGGTGCCATTGTCACCTCC GATTGCTCCATTGTTGGATCCATCGAGTTTCAAACAACTTGACTAACACGTCCTGTTCATAGTTACCTCCCAGAA CGAGAAGACCACCCTTCTCGGCAAGACCAAGCAGGATTACGCTTCCATCCTCCGCTGGTTGTCCTTCGTCAACTC CGAGGTTCTCCCCAAGTTCGGTGCCTGGTACCGTCCTTTGTTGGGTCTGGATGGTTACAACAAGAAGACTGTCGA TGAGGCCTCCAAGGTTGCCCTGAAGGCCATCTCCGCCTTCGAGACTCACCTCACTGCCAACACCTACCTTGTTGG TGAGCGTATCACTCTGGCCGATATCTTCGCTGCCTCCCTCCTTACCCGTGCTTTCGCCACTGTCTTGGACAAGAC CTGGCGCGAGGCCAACCCCGCCACCACCCGGTGGTACAACACTATTATCAACCAGGACGCCTTCAAGGCCGTCGT CCCCAGCCCCAAGTTCGCTGAGGAGGTCGTCAAGTACGTCGCCCCCAAGAAGGAGCCCAAGCCCAAGGCCGCTGC CCCCGCCGCTGCCGCCCCCGTCGAGGCCTCTACCGCTGAGCCTAAGGCTAAGCACCCCCTTGAGGCTCTTGGCAA GCCCACTCTTATCCTCGATGACTGGAAGCGCAAGTTCTCCAACGAGGACCCCCGCACCGTTGCCATGCCCTGGTT CTGGGAGCACTTCAACGCCGATGAGTACTCTCTCTGGAAGGTCAACTACCGTTACAACAACGAGCTCAAGCTCAC CTTCATGGCCAACAACTTGATCGGTGGCTTCCAGACTCGTCTCGAGGCTTCCCGCAAGTACCTCTTCGGTGCTCA GTCCGTTTACGGCGAGAACTACAACTGTGTCGTCTACGGTGCCTACATGACCCGCGGCCAGGAGTGGGAGCCCGC TTTCACTGTCGGCCCCGACTACGAGGGTTACGAGTTCACCAAGCTCGACCCCTCCAACGAGGCTGACCGCAAGCT CGTTGAGGACATGTGGTCCCAGGACGTTCCCGTCACTGTTGACGGCCAAGTTAAGGAGTGGGCCGATGGTCACGT CTTCAAATAA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences