© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9273.t1 |
| Gene name | |
| Location | scaffold_44:97837..98710 |
| Strand | + |
| Gene length (bp) | 873 |
| Transcript length (bp) | 585 |
| Coding sequence length (bp) | 585 |
| Protein length (aa) | 195 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00036 | EF-hand_1 | EF hand | 1.9E-07 | 156 | 181 |
| PF13499 | EF-hand_7 | EF-hand domain pair | 1.3E-12 | 113 | 180 |
| PF13405 | EF-hand_6 | EF-hand domain | 3.9E-05 | 45 | 69 |
| PF13405 | EF-hand_6 | EF-hand domain | 2.1E-05 | 114 | 142 |
| PF13202 | EF-hand_5 | EF hand | 2.0E-04 | 46 | 68 |
| PF13202 | EF-hand_5 | EF hand | 1.7E-02 | 118 | 135 |
| PF13202 | EF-hand_5 | EF hand | 1.0E-05 | 157 | 179 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 2.9E-04 | 90 | 136 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 7.5E-04 | 160 | 181 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005509 | calcium ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 89.05 | 47.98 | 130.12 |
| 5d_25C | Five days - 25 degrees Celsius | 128.37 | 74.07 | 182.67 |
| 7d_25C | Seven days - 25 degrees Celsius | 157.10 | 92.88 | 221.31 |
| 10d_25C | Ten days - 25 degrees Celsius | 224.44 | 135.95 | 312.92 |
| 7d_15C | Seven days - 15 degrees Celsius | 141.32 | 82.50 | 200.13 |
| 7d_30C | Seven days - 30 degrees Celsius | 129.73 | 75.02 | 184.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.145347 | no |
| 3d_25C | 7d_25C | 0.014377 | yes |
| 3d_25C | 7d_15C | 0.057058 | no |
| 3d_25C | 7d_30C | 0.134694 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.448781 | no |
| 5d_25C | 7d_15C | 0.760163 | no |
| 5d_25C | 7d_30C | 0.978243 | no |
| 5d_25C | 10d_25C | 0.008469 | yes |
| 7d_25C | 7d_15C | 0.731910 | no |
| 7d_25C | 7d_30C | 0.478789 | no |
| 7d_25C | 10d_25C | 0.115127 | no |
| 7d_15C | 7d_30C | 0.791445 | no |
| 7d_15C | 10d_25C | 0.031528 | yes |
| 7d_30C | 10d_25C | 0.013211 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9273.t1 MEPSTNEPNAAAIYDARRRRGSVGTTQLFDNIVSTSNFNRDEVDRLRKRFMKLDKNANGTIDRDEFLSLPQVSSN PLATRMIAIFDEDGGGDVDFQEFVTGLSAFSSKGNKQEKLRFAFKVYDIDRDGYISNGELFIVLKMMVGNNLKDV QLQQIVDKTIMEADKDQDGKISFEEFTDMVENTDVSISMTLNQI* |
| Coding | >Pro_DTO377G3_2|g9273.t1 ATGGAGCCCTCCACCAACGAGCCCAACGCTGCTGCGATTTACGATGCGCGGAGACGCCGCGGCTCCGTGGGTACC ACCCAGCTCTTCGATAACATTGTGTCTACATCCAACTTCAACCGGGATGAGGTGGATCGCCTGCGCAAGCGCTTC ATGAAGCTGGATAAGAATGCCAACGGCACTATCGACCGTGATGAATTCCTCTCCCTTCCCCAAGTGTCGTCCAAC CCACTCGCCACGAGGATGATCGCCATCTTCGACGAAGACGGTGGCGGTGACGTCGACTTCCAGGAATTCGTGACG GGCCTGTCGGCATTCAGCTCAAAGGGTAACAAGCAAGAGAAACTGCGATTCGCATTCAAGGTGTACGACATTGAC CGTGACGGTTACATTTCCAACGGCGAGCTCTTCATTGTGCTGAAGATGATGGTCGGCAATAACCTCAAGGACGTG CAGCTGCAGCAGATCGTCGACAAGACGATTATGGAGGCCGATAAGGATCAGGATGGAAAGATTAGCTTCGAGGAG TTCACGGATATGGTGGAGAACACAGACGTGAGCATCAGTATGACACTGAATCAAATATGA |
| Transcript | >Pro_DTO377G3_2|g9273.t1 ATGGAGCCCTCCACCAACGAGCCCAACGCTGCTGCGATTTACGATGCGCGGAGACGCCGCGGCTCCGTGGGTACC ACCCAGCTCTTCGATAACATTGTGTCTACATCCAACTTCAACCGGGATGAGGTGGATCGCCTGCGCAAGCGCTTC ATGAAGCTGGATAAGAATGCCAACGGCACTATCGACCGTGATGAATTCCTCTCCCTTCCCCAAGTGTCGTCCAAC CCACTCGCCACGAGGATGATCGCCATCTTCGACGAAGACGGTGGCGGTGACGTCGACTTCCAGGAATTCGTGACG GGCCTGTCGGCATTCAGCTCAAAGGGTAACAAGCAAGAGAAACTGCGATTCGCATTCAAGGTGTACGACATTGAC CGTGACGGTTACATTTCCAACGGCGAGCTCTTCATTGTGCTGAAGATGATGGTCGGCAATAACCTCAAGGACGTG CAGCTGCAGCAGATCGTCGACAAGACGATTATGGAGGCCGATAAGGATCAGGATGGAAAGATTAGCTTCGAGGAG TTCACGGATATGGTGGAGAACACAGACGTGAGCATCAGTATGACACTGAATCAAATATGA |
| Gene | >Pro_DTO377G3_2|g9273.t1 ATGGAGCCCTCCACCAACGAGCCCAACGCTGCTGCGATTTACGATGCGCGGAGACGCCGCGGCTCCGTGGGTACC ACCCAGCTCTTCGATAACATTGTGTCTACATCCAACTGTATGTTTTCCCCGGTCGGATAGGGTATGAAGGCGATG AATCGGGCTTGTGGCTGACTTCGCGACCACAGTCAACCGGGATGAGGTGGATCGCCTGCGCAAGCGCTTCATGAA GCTGGATAAGGTCAGTTGCGTCGCGCGGATTATGAGAATATGCTCTAACATACTCAACAATCTACAGAATGCCAA CGGCACTATCGACCGTGATGAATTCCTCTCCCTTCCCCAAGTGTCGTCCAACCCACTCGCCACGAGGTTCGTTGC TCCCTGGGCATCCACATCCAAACTCCAAACTCCCACCTACGATCTGCGATCTACATATATACACGGACTAGTCCC TGACCCAACTGTTTTATGCTAGGATGATCGCCATCTTCGACGAAGACGGTGGCGGTGACGTCGACTTCCAGGAAT TCGTGACGGGCCTGTCGGCATTCAGCTCAAAGGGTAACAAGCAAGAGAAACTGCGATTCGCATTCAAGGTGTACG ACATTGACCGTGACGGTTACATTTCCAACGGCGAGCTCTTCATTGTGCTGAAGATGATGGTCGGCAATAACCTCA AGGACGTGCAGCTGCAGCAGATCGTCGACAAGACGATTATGGAGGCCGATAAGGATCAGGATGGAAAGATTAGCT TCGAGGAGTTCACGGATATGGTGGAGAACACAGACGTGAGCATCAGTATGACACTGAGTATGTTTTGATCCGGGT TTTCTTATTGGAGGTCTTCGTGCTAACTATGGTCCAGATCAAATATGA |