© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9272.t1 |
| Gene name | |
| Location | scaffold_44:95459..97379 |
| Strand | - |
| Gene length (bp) | 1920 |
| Transcript length (bp) | 1704 |
| Coding sequence length (bp) | 1704 |
| Protein length (aa) | 568 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10513 | EPL1 | Enhancer of polycomb-like | 1.2E-22 | 12 | 153 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 55.79 | 33.91 | 77.67 |
| 5d_25C | Five days - 25 degrees Celsius | 73.16 | 44.72 | 101.59 |
| 7d_25C | Seven days - 25 degrees Celsius | 76.99 | 46.96 | 107.03 |
| 10d_25C | Ten days - 25 degrees Celsius | 101.22 | 61.39 | 141.05 |
| 7d_15C | Seven days - 15 degrees Celsius | 89.67 | 54.24 | 125.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 83.55 | 51.17 | 115.92 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.235776 | no |
| 3d_25C | 7d_25C | 0.147715 | no |
| 3d_25C | 7d_15C | 0.023188 | yes |
| 3d_25C | 7d_30C | 0.055327 | no |
| 3d_25C | 10d_25C | 0.003625 | yes |
| 5d_25C | 7d_25C | 0.870796 | no |
| 5d_25C | 7d_15C | 0.403387 | no |
| 5d_25C | 7d_30C | 0.610910 | no |
| 5d_25C | 10d_25C | 0.137887 | no |
| 7d_25C | 7d_15C | 0.569964 | no |
| 7d_25C | 7d_30C | 0.782067 | no |
| 7d_25C | 10d_25C | 0.231043 | no |
| 7d_15C | 7d_30C | 0.816700 | no |
| 7d_15C | 10d_25C | 0.664207 | no |
| 7d_30C | 10d_25C | 0.434868 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 7902 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9272.t1 MTRYGGLGRTRPKKLTSKASIPVVRESEIDIIDDEIQSSLQQIETGVEKAEESEIHLQRAINATAQGKVNEAHIP TPETILSNLQYDELYPPIFSQPATYIRFSSTVEDCCGCPYNMTEDDDAYLKLMNQKRDPSAGRCTEDIFEEVMNF FEETAQIKQPYAAIDNPPVLSFAEMQDMMDATLEDPMKIFAKEIYEHWKSCRMSVQNNAIVPQLKFETGQDTDDS DPFVCFRRREVRQIRKTRGRDAQSAEKLRRLRKELEDARELVALVRQREIARREMLSMERHLFKQRAEVKEMKRK LNVKDDDEDLINQKPKKRALDMPAQRPNAPQLRMPLKAGQGAEDLQLLEDVQAEKENEILRDIKQNITKHIKWNE GYVDHTRAPLSPSPERTFDVATFRPAFTAQLPTPPSSESSGEMETSLDVTSPLFSKDKLASHDMEMHDVPHRMPS FRRRVGRGGRLMIDRRNMGANKVEMDPLKADRFKFDQEDSDEDHDYDTDAYSIQIMQHRAITMAKAREQAAVAAQ AHAQAQAQAAQAQAQRRLLEQNGHQGSMGSNLGPGAVTVSET* |
| Coding | >Pro_DTO377G3_2|g9272.t1 ATGACTCGGTACGGGGGCCTGGGCAGGACACGCCCTAAAAAGCTCACCTCTAAGGCATCTATTCCCGTTGTCCGG GAGTCAGAGATCGATATCATCGACGATGAAATCCAGAGCTCTCTACAGCAGATCGAAACCGGCGTCGAAAAGGCC GAGGAGTCGGAAATTCACCTGCAACGTGCAATTAATGCCACTGCCCAGGGCAAAGTAAACGAGGCACACATCCCT ACTCCCGAGACCATTCTCAGTAATCTTCAATATGACGAACTCTATCCTCCCATCTTCTCGCAGCCTGCGACGTAC ATTCGCTTCTCCTCGACTGTCGAGGATTGCTGCGGATGCCCGTACAACATGACAGAGGACGATGATGCCTACCTT AAGCTCATGAACCAGAAGCGTGATCCATCTGCTGGTCGTTGCACAGAGGATATCTTTGAGGAGGTCATGAATTTC TTCGAGGAGACGGCGCAGATAAAGCAGCCTTACGCAGCCATTGATAATCCCCCGGTGTTATCCTTTGCAGAGATG CAGGACATGATGGATGCCACCTTAGAAGATCCCATGAAGATATTTGCCAAGGAGATATATGAGCACTGGAAGTCG TGTCGGATGTCTGTTCAGAATAACGCAATTGTACCGCAGCTCAAGTTCGAAACTGGTCAAGACACCGACGACAGT GATCCATTTGTCTGTTTCCGTAGACGCGAGGTTCGCCAGATCCGCAAAACTCGTGGTAGAGATGCGCAGAGTGCC GAAAAGCTCAGACGTCTTCGCAAAGAGCTGGAAGATGCTCGCGAGCTCGTTGCTTTGGTGCGCCAGCGTGAAATT GCTCGGAGGGAAATGCTCTCCATGGAGCGGCACCTCTTCAAGCAGCGTGCTGAGGTCAAGGAGATGAAGCGCAAG CTCAACGTCAAGGACGATGATGAGGACCTCATCAACCAAAAGCCGAAAAAGAGAGCGCTCGATATGCCAGCTCAA CGTCCCAATGCCCCTCAATTGCGCATGCCTCTCAAGGCTGGGCAAGGTGCAGAGGATTTGCAACTCCTGGAAGAC GTGCAGGCCGAAAAAGAGAACGAGATTCTGCGCGATATCAAGCAGAACATCACCAAGCACATCAAGTGGAACGAG GGATACGTGGATCACACCCGTGCACCACTGTCTCCTTCTCCAGAAAGGACATTCGATGTGGCTACCTTCCGACCC GCATTCACGGCACAGTTGCCCACTCCTCCATCGTCAGAATCATCTGGCGAGATGGAGACCTCCTTAGACGTCACT AGCCCGCTATTCTCTAAAGACAAGCTTGCATCGCATGACATGGAGATGCACGACGTACCACACCGAATGCCATCT TTCCGACGACGAGTTGGACGTGGTGGTCGGTTGATGATCGATCGTCGCAACATGGGAGCAAATAAAGTTGAGATG GACCCACTCAAGGCCGACCGATTCAAGTTTGACCAAGAAGATTCCGACGAGGACCACGATTATGACACAGATGCG TACAGCATCCAAATCATGCAGCATCGGGCTATTACCATGGCCAAGGCGCGCGAACAGGCTGCAGTGGCTGCCCAG GCTCATGCGCAGGCGCAAGCACAGGCAGCCCAAGCCCAAGCACAGCGCCGACTGCTGGAGCAAAATGGTCACCAA GGCTCTATGGGGTCGAACCTCGGACCAGGTGCCGTGACGGTGTCCGAAACCTGA |
| Transcript | >Pro_DTO377G3_2|g9272.t1 ATGACTCGGTACGGGGGCCTGGGCAGGACACGCCCTAAAAAGCTCACCTCTAAGGCATCTATTCCCGTTGTCCGG GAGTCAGAGATCGATATCATCGACGATGAAATCCAGAGCTCTCTACAGCAGATCGAAACCGGCGTCGAAAAGGCC GAGGAGTCGGAAATTCACCTGCAACGTGCAATTAATGCCACTGCCCAGGGCAAAGTAAACGAGGCACACATCCCT ACTCCCGAGACCATTCTCAGTAATCTTCAATATGACGAACTCTATCCTCCCATCTTCTCGCAGCCTGCGACGTAC ATTCGCTTCTCCTCGACTGTCGAGGATTGCTGCGGATGCCCGTACAACATGACAGAGGACGATGATGCCTACCTT AAGCTCATGAACCAGAAGCGTGATCCATCTGCTGGTCGTTGCACAGAGGATATCTTTGAGGAGGTCATGAATTTC TTCGAGGAGACGGCGCAGATAAAGCAGCCTTACGCAGCCATTGATAATCCCCCGGTGTTATCCTTTGCAGAGATG CAGGACATGATGGATGCCACCTTAGAAGATCCCATGAAGATATTTGCCAAGGAGATATATGAGCACTGGAAGTCG TGTCGGATGTCTGTTCAGAATAACGCAATTGTACCGCAGCTCAAGTTCGAAACTGGTCAAGACACCGACGACAGT GATCCATTTGTCTGTTTCCGTAGACGCGAGGTTCGCCAGATCCGCAAAACTCGTGGTAGAGATGCGCAGAGTGCC GAAAAGCTCAGACGTCTTCGCAAAGAGCTGGAAGATGCTCGCGAGCTCGTTGCTTTGGTGCGCCAGCGTGAAATT GCTCGGAGGGAAATGCTCTCCATGGAGCGGCACCTCTTCAAGCAGCGTGCTGAGGTCAAGGAGATGAAGCGCAAG CTCAACGTCAAGGACGATGATGAGGACCTCATCAACCAAAAGCCGAAAAAGAGAGCGCTCGATATGCCAGCTCAA CGTCCCAATGCCCCTCAATTGCGCATGCCTCTCAAGGCTGGGCAAGGTGCAGAGGATTTGCAACTCCTGGAAGAC GTGCAGGCCGAAAAAGAGAACGAGATTCTGCGCGATATCAAGCAGAACATCACCAAGCACATCAAGTGGAACGAG GGATACGTGGATCACACCCGTGCACCACTGTCTCCTTCTCCAGAAAGGACATTCGATGTGGCTACCTTCCGACCC GCATTCACGGCACAGTTGCCCACTCCTCCATCGTCAGAATCATCTGGCGAGATGGAGACCTCCTTAGACGTCACT AGCCCGCTATTCTCTAAAGACAAGCTTGCATCGCATGACATGGAGATGCACGACGTACCACACCGAATGCCATCT TTCCGACGACGAGTTGGACGTGGTGGTCGGTTGATGATCGATCGTCGCAACATGGGAGCAAATAAAGTTGAGATG GACCCACTCAAGGCCGACCGATTCAAGTTTGACCAAGAAGATTCCGACGAGGACCACGATTATGACACAGATGCG TACAGCATCCAAATCATGCAGCATCGGGCTATTACCATGGCCAAGGCGCGCGAACAGGCTGCAGTGGCTGCCCAG GCTCATGCGCAGGCGCAAGCACAGGCAGCCCAAGCCCAAGCACAGCGCCGACTGCTGGAGCAAAATGGTCACCAA GGCTCTATGGGGTCGAACCTCGGACCAGGTGCCGTGACGGTGTCCGAAACCTGA |
| Gene | >Pro_DTO377G3_2|g9272.t1 ATGACTCGGTACGGGGGCCTGGGCAGGACACGCCCTAAAAAGCTCACCTCTAAGGCATCTATTCCCGTTGTCCGG GAGTCAGAGATCGATATCATCGACGATGAAATCCAGAGCTCTCTACAGCAGATCGAAACCGGCGTCGAAAAGGCC GAGGAGTCGGTGAGTCCCTAATTTTAGCCTCATCCCCATCCCCATCACGTGACATCATCACGAGATTTTCACCCC AATATAAAATGAGTCGCGCTGACCTTGGATCGGGTTAGGAAATTCACCTGCAACGTGCAATTAATGCCACTGCCC AGGGCAAAGTAAACGAGGCACACATCCCTACTCCCGAGACCATTCTCAGTAATCTTCAATATGACGAACTCTATC CTCCCATCTTCTCGCAGCCTGCGACGTACATTCGCTTCTCCTCGACTGTCGAGGATTGCTGCGGATGCCCGTACA ACATGACAGAGGACGATGATGCCTACCTTAAGCTCATGAACCAGAAGCGTGATCCATCTGCTGGTCGTTGCACAG AGGATATCTTTGAGGAGGTCATGAATTTCTTCGAGGAGACGGCGCAGATAAAGCAGCCTTACGCAGCCATTGATA ATCCCCCGGTGTTATCCTTTGCAGAGATGCAGGACATGATGGATGCCACCTTAGAAGATCCCATGAAGATATTTG CCAAGGAGATATATGAGCACTGGAAGTCGTGTCGGATGTCTGTTCAGAATAACGCAATTGTACCGCAGCTCAAGG TACGTTCTTTTCCCATGCCAATGACAAGCAACGTCACTAACTTCTCCGCAGTTCGAAACTGGTCAAGACACCGAC GACAGTGATCCATTTGTCTGTTTCCGTAGACGCGAGGTTCGCCAGATCCGCAAAACTCGTGGTAGAGATGCGCAG AGTGCCGAAAAGCTCAGACGTCTTCGCAAAGAGCTGGAAGATGCTCGCGAGCTCGTTGCTTTGGTGCGCCAGCGT GAAATTGCTCGGAGGGAAATGCTCTCCATGGAGCGGCACCTCTTCAAGCAGCGTGCTGAGGTCAAGGAGATGAAG CGCAAGCTCAACGTCAAGGACGATGATGAGGACCTCATCAACCAAAAGGTAGGCGGCGTTGATACTGTGGTTGCT CAATATATGCATATGCTAAGCAATCACCCACAGCCGAAAAAGAGAGCGCTCGATATGCCAGCTCAACGTCCCAAT GCCCCTCAATTGCGCATGCCTCTCAAGGCTGGGCAAGGTGCAGAGGATTTGCAACTCCTGGAAGACGTGCAGGCC GAAAAAGAGAACGAGATTCTGCGCGATATCAAGCAGAACATCACCAAGCACATCAAGTGGAACGAGGGATACGTG GATCACACCCGTGCACCACTGTCTCCTTCTCCAGAAAGGACATTCGATGTGGCTACCTTCCGACCCGCATTCACG GCACAGTTGCCCACTCCTCCATCGTCAGAATCATCTGGCGAGATGGAGACCTCCTTAGACGTCACTAGCCCGCTA TTCTCTAAAGACAAGCTTGCATCGCATGACATGGAGATGCACGACGTACCACACCGAATGCCATCTTTCCGACGA CGAGTTGGACGTGGTGGTCGGTTGATGATCGATCGTCGCAACATGGGAGCAAATAAAGTTGAGATGGACCCACTC AAGGCCGACCGATTCAAGTTTGACCAAGAAGATTCCGACGAGGACCACGATTATGACACAGATGCGTACAGCATC CAAATCATGCAGCATCGGGCTATTACCATGGCCAAGGCGCGCGAACAGGCTGCAGTGGCTGCCCAGGCTCATGCG CAGGCGCAAGCACAGGCAGCCCAAGCCCAAGCACAGCGCCGACTGCTGGAGCAAAATGGTCACCAAGGCTCTATG GGGTCGAACCTCGGACCAGGTGCCGTGACGGTGTCCGAAACCTGA |