Fungal Genomics

General Properties

Protein ID	Pro_DTO377G3_2|g9268.t1
Gene name
Location	scaffold_44:89000..89494
Strand	-
Gene length (bp)	494
Transcript length (bp)	438
Coding sequence length (bp)	438
Protein length (aa)	146

Overview

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PFAM Domains

(None)

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

Domain #	Start	End	Length
1	10	32	22
2	37	56	19
3	60	82	22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	18.50	5.02	31.97
5d_25C	Five days - 25 degrees Celsius	26.70	8.49	44.92
7d_25C	Seven days - 25 degrees Celsius	49.43	20.46	78.40
10d_25C	Ten days - 25 degrees Celsius	115.23	59.29	171.18
7d_15C	Seven days - 15 degrees Celsius	13.95	2.97	24.93
7d_30C	Seven days - 30 degrees Celsius	41.46	15.55	67.37

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.411275	no
3d_25C	7d_25C	0.006742	yes
3d_25C	7d_15C	0.596600	no
3d_25C	7d_30C	0.027278	yes
3d_25C	10d_25C	0.000700	yes
5d_25C	7d_25C	0.080143	no
5d_25C	7d_15C	0.123900	no
5d_25C	7d_30C	0.250173	no
5d_25C	10d_25C	0.000700	yes
7d_25C	7d_15C	0.002761	yes
7d_25C	7d_30C	0.679149	no
7d_25C	10d_25C	0.004450	yes
7d_15C	7d_30C	0.007091	yes
7d_15C	10d_25C	0.000700	yes
7d_30C	10d_25C	0.000700	yes

Orthologs

Orthofinder run ID	2
Orthogroup	7898
Change Orthofinder run	2: Penicillium roqueforti - all strains

Species	Protein ID
Penicillium roqueforti DTO002I6	Pro_DTO002I6_2|g8672.t1
Penicillium roqueforti DTO003C3	Pro_DTO003C3_2|g7982.t1
Penicillium roqueforti DTO003H1 (CBS 147308)	Pro_DTO003H1_2|g7836.t1
Penicillium roqueforti DTO006G1	Pro_DTO006G1_2|g4757.t1
Penicillium roqueforti DTO006G7	Pro_DTO006G7_3|g4010.t1
Penicillium roqueforti DTO012A1	Pro_DTO012A1_2|g3167.t1
Penicillium roqueforti DTO012A2 (CBS 147309)	Pro_DTO012A2_2|g9031.t1
Penicillium roqueforti DTO012A6 (CBS 147310)	Pro_DTO012A6_2|g8859.t1
Penicillium roqueforti DTO012A7	Pro_DTO012A7_2|g9404.t1
Penicillium roqueforti DTO012A8	Pro_DTO012A8_2|g4750.t1
Penicillium roqueforti DTO012A9	Pro_DTO012A9_2|g6961.t1
Penicillium roqueforti DTO013E5	Pro_DTO013E5_2|g7693.t1
Penicillium roqueforti DTO013F2	Pro_DTO013F2_2|g7268.t1
Penicillium roqueforti DTO013F5 (CBS 147311)	Pro_DTO013F5_2|g7601.t1
Penicillium roqueforti DTO027I6	Pro_DTO027I6_2|g6788.t1
Penicillium roqueforti DTO032C6	Pro_DTO032C6_2|g8612.t1
Penicillium roqueforti DTO039G3	Pro_DTO039G3_2|g6695.t1
Penicillium roqueforti DTO046C5	Pro_DTO046C5_2|g8755.t1
Penicillium roqueforti DTO070G2 (CBS 147317)	Pro_DTO070G2_2|g9367.t1
Penicillium roqueforti DTO081F9 (CBS 147318)	Pro_DTO081F9_2|g9383.t1
Penicillium roqueforti DTO101D6 (CBS 147325)	Pro_DTO101D6_2|g9090.t1
Penicillium roqueforti DTO102I9 (CBS 147326)	Pro_DTO102I9_2|g8989.t1
Penicillium roqueforti DTO126G2 (CBS 147330)	Pro_DTO126G2_2|g8935.t1
Penicillium roqueforti DTO127F7 (CBS 147331)	Pro_DTO127F7_2|g9254.t1
Penicillium roqueforti DTO127F9 (CBS 147332)	Pro_DTO127F9_2|g9046.t1
Penicillium roqueforti DTO130C1 (CBS 147333)	Pro_DTO130C1_2|g8426.t1
Penicillium roqueforti DTO163C3 (CBS 147337)	Pro_DTO163C3_2|g9112.t1
Penicillium roqueforti DTO163F5 (CBS 147338)	Pro_DTO163F5_2|g3597.t1
Penicillium roqueforti DTO163G4 (CBS 147339)	Pro_DTO163G4_2|g8993.t1
Penicillium roqueforti DTO265D5 (CBS 147372)	Pro_DTO265D5_2|g8796.t1
Penicillium roqueforti DTO369A1 (CBS 147354)	Pro_DTO369A1_2|g4360.t1
Penicillium roqueforti DTO375B1 (CBS 147355)	Pro_DTO375B1_2|g9304.t1
Penicillium roqueforti DTO377G2 (LCP 96.3914a)	Pro_DTO377G2_2|g8967.t1
Penicillium roqueforti LCP96 04111	Pro_DTO377G3_2|g9268.t1 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2|g9268.t1 MSWVSILKYPLLLVVGFIIQLLSYLLSTLLFLASPVIYIGHVFLYLALLPLRILVILEGFIYFMTVAVLVGATIG MILHFTGSVISQFLRIEESNEPRRPRVKQELLYSVPQNHSFDYLAAQLDDRKFLPYSTILEEEENSYESG*
Coding	>Pro_DTO377G3_2|g9268.t1 ATGAGTTGGGTATCGATCCTGAAATATCCTCTGTTGCTCGTTGTTGGCTTTATAATCCAATTACTATCCTACTTG TTGTCAACTCTCCTCTTCCTCGCATCGCCAGTGATCTACATCGGACATGTCTTCTTATACCTGGCACTGCTTCCA TTGCGTATCCTCGTGATATTAGAGGGATTCATCTATTTCATGACTGTGGCTGTGCTTGTCGGAGCCACTATAGGC ATGATCCTACATTTTACCGGCAGCGTCATATCACAATTCCTGCGGATTGAAGAGTCAAATGAGCCACGGCGACCT CGGGTGAAGCAAGAGCTTCTATATTCTGTGCCCCAAAATCATTCTTTCGACTATCTAGCAGCGCAGCTGGATGAT CGCAAGTTCCTGCCCTACTCGACGATCTTGGAGGAGGAGGAGAACAGCTATGAGTCAGGCTGA
Transcript	>Pro_DTO377G3_2|g9268.t1 ATGAGTTGGGTATCGATCCTGAAATATCCTCTGTTGCTCGTTGTTGGCTTTATAATCCAATTACTATCCTACTTG TTGTCAACTCTCCTCTTCCTCGCATCGCCAGTGATCTACATCGGACATGTCTTCTTATACCTGGCACTGCTTCCA TTGCGTATCCTCGTGATATTAGAGGGATTCATCTATTTCATGACTGTGGCTGTGCTTGTCGGAGCCACTATAGGC ATGATCCTACATTTTACCGGCAGCGTCATATCACAATTCCTGCGGATTGAAGAGTCAAATGAGCCACGGCGACCT CGGGTGAAGCAAGAGCTTCTATATTCTGTGCCCCAAAATCATTCTTTCGACTATCTAGCAGCGCAGCTGGATGAT CGCAAGTTCCTGCCCTACTCGACGATCTTGGAGGAGGAGGAGAACAGCTATGAGTCAGGCTGA
Gene	>Pro_DTO377G3_2|g9268.t1 ATGAGTTGGGTATCGATCCTGAAATATCCTCTGTTGCTCGTTGTTGGCTTTATAATCCAATTACTATCCTACTTG TTGTCAACTCTCCTCTTCCTCGCATCGCCAGTGATCTACATCGGACATGTCTTCTTATACCTGGCACTGCTTCCA TTGCGTATCCTCGTGATATTAGAGGTATGCATATCTAAATATCGTAGTCTTTAGTGGTAGCATGTACTAAACTCT AATAGGGATTCATCTATTTCATGACTGTGGCTGTGCTTGTCGGAGCCACTATAGGCATGATCCTACATTTTACCG GCAGCGTCATATCACAATTCCTGCGGATTGAAGAGTCAAATGAGCCACGGCGACCTCGGGTGAAGCAAGAGCTTC TATATTCTGTGCCCCAAAATCATTCTTTCGACTATCTAGCAGCGCAGCTGGATGATCGCAAGTTCCTGCCCTACT CGACGATCTTGGAGGAGGAGGAGAACAGCTATGAGTCAGGCTGA