© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g926.t1 |
| Gene name | |
| Location | scaffold_01:2457591..2459136 |
| Strand | + |
| Gene length (bp) | 1545 |
| Transcript length (bp) | 1410 |
| Coding sequence length (bp) | 1410 |
| Protein length (aa) | 470 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.4E-38 | 45 | 414 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.5E-10 | 51 | 226 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 59 | 22 |
| 2 | 74 | 96 | 22 |
| 3 | 109 | 131 | 22 |
| 4 | 191 | 213 | 22 |
| 5 | 251 | 273 | 22 |
| 6 | 293 | 315 | 22 |
| 7 | 335 | 357 | 22 |
| 8 | 362 | 384 | 22 |
| 9 | 391 | 413 | 22 |
| 10 | 428 | 450 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.64 | 0.98 | 6.30 |
| 5d_25C | Five days - 25 degrees Celsius | 1.42 | 0.15 | 2.68 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.42 | 0.31 | 4.54 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.67 | 0.00 | 1.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.72 | 0.83 | 6.62 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.68 | 0.00 | 1.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.033923 | yes |
| 3d_25C | 7d_25C | 0.408258 | no |
| 3d_25C | 7d_15C | 0.974116 | no |
| 3d_25C | 7d_30C | 0.003197 | yes |
| 3d_25C | 10d_25C | 0.003625 | yes |
| 5d_25C | 7d_25C | 0.295616 | no |
| 5d_25C | 7d_15C | 0.028871 | yes |
| 5d_25C | 7d_30C | 0.189796 | no |
| 5d_25C | 10d_25C | 0.218111 | no |
| 7d_25C | 7d_15C | 0.396294 | no |
| 7d_25C | 7d_30C | 0.019090 | yes |
| 7d_25C | 10d_25C | 0.026832 | yes |
| 7d_15C | 7d_30C | 0.002761 | yes |
| 7d_15C | 10d_25C | 0.003197 | yes |
| 7d_30C | 10d_25C | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g926.t1 MGRPNSAEEYGRDAPPDSPITLDEKEDPKRWPKSRKWLYTVIVALMAGVIAFCSSIYTAGTNLITVTYGCSQTVA TLGVTTFLLGFASGPLIFAPLSELYGRNPIFRLTLGLFVLFQIGCALAPNIAALIIFRFLAGFFGSPTVTNSGAS ITDLWPQSERSVPLALFSAGSFLGPVFAPVAGGFVSEYLSWRWNIWLVLILSGVVYATCVLFLPETYAAKLLRDK ARRLGVVQSGPSLQEQLGTCLIRPWLMLFAEPILFLLSLYMAFIYGILYLDFTAYPIVYKQSRGWSPGIAGLSFL GMGTGMAIATIASPYVNTIHGKYVSKLGPVPEARLPHLVILSWLIPVSLFWFGWTALPPAHWIVAIISGVPFGFS LILLFLSITSYLTDCYGPYGASALAANAVFRSVFGAVFPLFGTYLYDGLGVPWGSSLLGFFALAFAPLPWVFYHF GPRIRMKSKYHRMMIGDGA* |
| Coding | >Pro_DTO377G3_2|g926.t1 ATGGGTCGCCCGAACTCGGCGGAGGAATATGGTCGTGATGCCCCTCCAGACAGCCCAATTACCCTTGATGAGAAG GAAGATCCTAAGAGATGGCCGAAAAGCAGAAAATGGCTCTATACGGTGATTGTGGCGCTGATGGCTGGAGTAATT GCCTTTTGTTCGAGTATCTATACAGCAGGAACCAACCTTATTACTGTCACCTATGGATGTTCGCAGACAGTGGCT ACTCTAGGAGTGACCACCTTTCTACTAGGGTTTGCATCGGGGCCTCTCATCTTTGCTCCCCTGTCGGAATTATAC GGTCGCAACCCCATATTCCGGCTGACGCTGGGATTGTTTGTCCTCTTCCAAATTGGTTGCGCATTAGCCCCAAAC ATAGCCGCGCTGATAATCTTTCGATTCTTAGCCGGCTTTTTCGGTTCTCCGACGGTCACAAACTCGGGCGCGTCT ATCACAGACCTCTGGCCGCAAAGCGAACGATCAGTACCTTTAGCTCTGTTCTCCGCCGGTAGCTTCCTTGGGCCT GTTTTTGCCCCGGTAGCTGGCGGGTTCGTCTCGGAATACCTTTCCTGGAGATGGAACATCTGGTTGGTGCTTATT CTAAGCGGAGTTGTCTACGCCACATGCGTGCTCTTCCTTCCAGAGACGTACGCAGCCAAGCTTTTGCGGGATAAG GCCCGGCGCCTGGGAGTCGTCCAGTCCGGGCCCTCCCTCCAAGAGCAGCTCGGGACCTGCCTTATCCGTCCCTGG CTGATGCTTTTCGCGGAGCCGATCTTATTCCTCCTCTCTCTCTACATGGCCTTCATTTACGGCATTCTCTACCTC GACTTCACGGCGTATCCGATTGTATATAAACAGTCCCGCGGCTGGTCTCCTGGTATTGCAGGCCTATCCTTTCTC GGAATGGGTACCGGCATGGCCATTGCCACGATTGCCTCTCCCTATGTAAACACGATTCACGGAAAATACGTATCC AAACTTGGTCCTGTCCCAGAAGCCAGACTACCCCACCTTGTGATCTTGTCTTGGCTGATCCCTGTCAGCCTGTTC TGGTTCGGCTGGACCGCCCTGCCTCCGGCGCATTGGATTGTAGCAATCATTTCGGGGGTTCCGTTTGGGTTCAGC CTGATATTACTTTTCCTTAGCATCACATCTTACCTCACGGACTGCTATGGTCCGTATGGCGCGAGTGCGCTTGCG GCAAATGCAGTCTTCCGCTCAGTCTTTGGAGCGGTATTTCCTCTCTTTGGAACGTATCTGTACGACGGACTTGGC GTGCCGTGGGGATCGAGCCTGCTAGGTTTCTTTGCACTAGCATTTGCTCCCCTCCCGTGGGTGTTTTATCATTTT GGGCCCCGGATTCGAATGAAGAGCAAGTATCATAGAATGATGATTGGTGATGGGGCATAG |
| Transcript | >Pro_DTO377G3_2|g926.t1 ATGGGTCGCCCGAACTCGGCGGAGGAATATGGTCGTGATGCCCCTCCAGACAGCCCAATTACCCTTGATGAGAAG GAAGATCCTAAGAGATGGCCGAAAAGCAGAAAATGGCTCTATACGGTGATTGTGGCGCTGATGGCTGGAGTAATT GCCTTTTGTTCGAGTATCTATACAGCAGGAACCAACCTTATTACTGTCACCTATGGATGTTCGCAGACAGTGGCT ACTCTAGGAGTGACCACCTTTCTACTAGGGTTTGCATCGGGGCCTCTCATCTTTGCTCCCCTGTCGGAATTATAC GGTCGCAACCCCATATTCCGGCTGACGCTGGGATTGTTTGTCCTCTTCCAAATTGGTTGCGCATTAGCCCCAAAC ATAGCCGCGCTGATAATCTTTCGATTCTTAGCCGGCTTTTTCGGTTCTCCGACGGTCACAAACTCGGGCGCGTCT ATCACAGACCTCTGGCCGCAAAGCGAACGATCAGTACCTTTAGCTCTGTTCTCCGCCGGTAGCTTCCTTGGGCCT GTTTTTGCCCCGGTAGCTGGCGGGTTCGTCTCGGAATACCTTTCCTGGAGATGGAACATCTGGTTGGTGCTTATT CTAAGCGGAGTTGTCTACGCCACATGCGTGCTCTTCCTTCCAGAGACGTACGCAGCCAAGCTTTTGCGGGATAAG GCCCGGCGCCTGGGAGTCGTCCAGTCCGGGCCCTCCCTCCAAGAGCAGCTCGGGACCTGCCTTATCCGTCCCTGG CTGATGCTTTTCGCGGAGCCGATCTTATTCCTCCTCTCTCTCTACATGGCCTTCATTTACGGCATTCTCTACCTC GACTTCACGGCGTATCCGATTGTATATAAACAGTCCCGCGGCTGGTCTCCTGGTATTGCAGGCCTATCCTTTCTC GGAATGGGTACCGGCATGGCCATTGCCACGATTGCCTCTCCCTATGTAAACACGATTCACGGAAAATACGTATCC AAACTTGGTCCTGTCCCAGAAGCCAGACTACCCCACCTTGTGATCTTGTCTTGGCTGATCCCTGTCAGCCTGTTC TGGTTCGGCTGGACCGCCCTGCCTCCGGCGCATTGGATTGTAGCAATCATTTCGGGGGTTCCGTTTGGGTTCAGC CTGATATTACTTTTCCTTAGCATCACATCTTACCTCACGGACTGCTATGGTCCGTATGGCGCGAGTGCGCTTGCG GCAAATGCAGTCTTCCGCTCAGTCTTTGGAGCGGTATTTCCTCTCTTTGGAACGTATCTGTACGACGGACTTGGC GTGCCGTGGGGATCGAGCCTGCTAGGTTTCTTTGCACTAGCATTTGCTCCCCTCCCGTGGGTGTTTTATCATTTT GGGCCCCGGATTCGAATGAAGAGCAAGTATCATAGAATGATGATTGGTGATGGGGCATAG |
| Gene | >Pro_DTO377G3_2|g926.t1 ATGGGTCGCCCGAACTCGGCGGAGGAATATGGTCGTGATGCCCCTCCAGACAGCCCAATTACCCTTGATGAGAAG GAAGATCCTAAGAGATGGCCGAAAAGCAGAAAATGTGAGAGACCTCTTCGATTTTGAATCTCTACCAAAGTAATA ATATATGGGTTAACTGACGATTATGGCTATATGATTAGGGCTCTATACGGTGATTGTGGCGCTGATGGCTGGAGT AATTGCCTTTTGTTCGAGTATCTATACAGCAGGAACCAACCTTATTACTGTCACCTATGGATGTTCGCAGACAGT GGCTACTCTAGGAGTGACCACCTTTCTACTAGGGTTTGCATCGGGGCCTCTCATCTTTGCTCCCCTGTCGGAATT ATAGTCAGTCTATGTTGAGATACTCCTGCCTTCAGCCGCTTATACCAGTATTAATCTAGCGGTCGCAACCCCATA TTCCGGCTGACGCTGGGATTGTTTGTCCTCTTCCAAATTGGTTGCGCATTAGCCCCAAACATAGCCGCGCTGATA ATCTTTCGATTCTTAGCCGGCTTTTTCGGTTCTCCGACGGTCACAAACTCGGGCGCGTCTATCACAGACCTCTGG CCGCAAAGCGAACGATCAGTACCTTTAGCTCTGTTCTCCGCCGGTAGCTTCCTTGGGCCTGTTTTTGCCCCGGTA GCTGGCGGGTTCGTCTCGGAATACCTTTCCTGGAGATGGAACATCTGGTTGGTGCTTATTCTAAGCGGAGTTGTC TACGCCACATGCGTGCTCTTCCTTCCAGAGACGTACGCAGCCAAGCTTTTGCGGGATAAGGCCCGGCGCCTGGGA GTCGTCCAGTCCGGGCCCTCCCTCCAAGAGCAGCTCGGGACCTGCCTTATCCGTCCCTGGCTGATGCTTTTCGCG GAGCCGATCTTATTCCTCCTCTCTCTCTACATGGCCTTCATTTACGGCATTCTCTACCTCGACTTCACGGCGTAT CCGATTGTATATAAACAGTCCCGCGGCTGGTCTCCTGGTATTGCAGGCCTATCCTTTCTCGGAATGGGTACCGGC ATGGCCATTGCCACGATTGCCTCTCCCTATGTAAACACGATTCACGGAAAATACGTATCCAAACTTGGTCCTGTC CCAGAAGCCAGACTACCCCACCTTGTGATCTTGTCTTGGCTGATCCCTGTCAGCCTGTTCTGGTTCGGCTGGACC GCCCTGCCTCCGGCGCATTGGATTGTAGCAATCATTTCGGGGGTTCCGTTTGGGTTCAGCCTGATATTACTTTTC CTTAGCATCACATCTTACCTCACGGACTGCTATGGTCCGTATGGCGCGAGTGCGCTTGCGGCAAATGCAGTCTTC CGCTCAGTCTTTGGAGCGGTATTTCCTCTCTTTGGAACGTATCTGTACGACGGACTTGGCGTGCCGTGGGGATCG AGCCTGCTAGGTTTCTTTGCACTAGCATTTGCTCCCCTCCCGTGGGTGTTTTATCATTTTGGGCCCCGGATTCGA ATGAAGAGCAAGTATCATAGAATGATGATTGGTGATGGGGCATAG |