© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g9254.t1 |
| Gene name | |
| Location | scaffold_44:60890..61504 |
| Strand | + |
| Gene length (bp) | 614 |
| Transcript length (bp) | 525 |
| Coding sequence length (bp) | 525 |
| Protein length (aa) | 175 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00125 | Histone | Core histone H2A/H2B/H3/H4 | 3.5E-42 | 40 | 167 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.29 | 4.41 | 28.17 |
| 5d_25C | Five days - 25 degrees Celsius | 11.44 | 2.03 | 20.85 |
| 7d_25C | Seven days - 25 degrees Celsius | 17.98 | 5.10 | 30.87 |
| 10d_25C | Ten days - 25 degrees Celsius | 10.47 | 2.23 | 18.71 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.45 | 3.74 | 33.16 |
| 7d_30C | Seven days - 30 degrees Celsius | 12.54 | 2.53 | 22.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.478280 | no |
| 3d_25C | 7d_25C | 0.874434 | no |
| 3d_25C | 7d_15C | 0.837304 | no |
| 3d_25C | 7d_30C | 0.635305 | no |
| 3d_25C | 10d_25C | 0.353659 | no |
| 5d_25C | 7d_25C | 0.324741 | no |
| 5d_25C | 7d_15C | 0.300231 | no |
| 5d_25C | 7d_30C | 0.890300 | no |
| 5d_25C | 10d_25C | 0.892375 | no |
| 7d_25C | 7d_15C | 0.969839 | no |
| 7d_25C | 7d_30C | 0.468423 | no |
| 7d_25C | 10d_25C | 0.216691 | no |
| 7d_15C | 7d_30C | 0.438200 | no |
| 7d_15C | 10d_25C | 0.206607 | no |
| 7d_30C | 10d_25C | 0.761309 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9254.t1 MPPKQARKTVPGSAQKNKARKTAAVPAAEPTTGDDATPTKARKTKGGKSKVSKSPANVQPGDPTPTGRRRRYKPG TVALKEIRRYQRSYDLLIAKLPFARLVREVALDLLPAEVGAELRWQSHAIQALQEAAEAFLVHLFEDTNLCALHA KRVTIMQKDIQLARRIRGVWAGLG* |
| Coding | >Pro_DTO377G3_2|g9254.t1 ATGCCGCCCAAGCAAGCCCGCAAAACAGTACCGGGCAGCGCACAGAAAAACAAAGCGCGCAAGACAGCCGCCGTG CCCGCCGCCGAGCCCACCACCGGCGACGATGCAACACCAACCAAAGCACGCAAGACAAAAGGAGGGAAGTCAAAA GTCAGCAAGAGCCCCGCCAACGTCCAACCCGGAGACCCAACCCCCACAGGCCGCCGCCGCCGCTACAAGCCCGGC ACCGTCGCATTGAAAGAAATCCGCCGCTACCAACGCTCCTACGATCTGCTCATCGCCAAACTGCCCTTTGCGCGC TTAGTGCGCGAAGTCGCACTCGACCTGCTCCCCGCCGAGGTCGGCGCCGAGTTGCGCTGGCAGTCGCATGCCATC CAAGCTCTCCAGGAGGCCGCGGAGGCGTTCCTGGTCCATCTATTCGAGGATACGAATCTGTGCGCGCTACACGCG AAGCGCGTGACTATTATGCAGAAGGATATCCAGCTTGCGCGGAGAATTCGCGGCGTGTGGGCTGGGCTGGGTTGA |
| Transcript | >Pro_DTO377G3_2|g9254.t1 ATGCCGCCCAAGCAAGCCCGCAAAACAGTACCGGGCAGCGCACAGAAAAACAAAGCGCGCAAGACAGCCGCCGTG CCCGCCGCCGAGCCCACCACCGGCGACGATGCAACACCAACCAAAGCACGCAAGACAAAAGGAGGGAAGTCAAAA GTCAGCAAGAGCCCCGCCAACGTCCAACCCGGAGACCCAACCCCCACAGGCCGCCGCCGCCGCTACAAGCCCGGC ACCGTCGCATTGAAAGAAATCCGCCGCTACCAACGCTCCTACGATCTGCTCATCGCCAAACTGCCCTTTGCGCGC TTAGTGCGCGAAGTCGCACTCGACCTGCTCCCCGCCGAGGTCGGCGCCGAGTTGCGCTGGCAGTCGCATGCCATC CAAGCTCTCCAGGAGGCCGCGGAGGCGTTCCTGGTCCATCTATTCGAGGATACGAATCTGTGCGCGCTACACGCG AAGCGCGTGACTATTATGCAGAAGGATATCCAGCTTGCGCGGAGAATTCGCGGCGTGTGGGCTGGGCTGGGTTGA |
| Gene | >Pro_DTO377G3_2|g9254.t1 ATGCCGCCCAAGCAAGCCCGCAAAACAGTACCGGGCAGCGCACAGAAAAACAAAGCGCGCAAGACAGCCGCCGTG CCCGCCGCCGAGCCCACCACCGGCGACGATGCAACACCAACCAAAGCACGCAAGACAAAAGGAGGGAAGTCAAAA GTCAGCAAGAGCCCCGCCAACGTCCAACGTACGTTCAACTCTCCCACCAAAACAAGCGCCTTACACGCCTCCACA TGCGCAACCCAATCCCAATCTCCCCATTCTAACAATTCCCAGCCGGAGACCCAACCCCCACAGGCCGCCGCCGCC GCTACAAGCCCGGCACCGTCGCATTGAAAGAAATCCGCCGCTACCAACGCTCCTACGATCTGCTCATCGCCAAAC TGCCCTTTGCGCGCTTAGTGCGCGAAGTCGCACTCGACCTGCTCCCCGCCGAGGTCGGCGCCGAGTTGCGCTGGC AGTCGCATGCCATCCAAGCTCTCCAGGAGGCCGCGGAGGCGTTCCTGGTCCATCTATTCGAGGATACGAATCTGT GCGCGCTACACGCGAAGCGCGTGACTATTATGCAGAAGGATATCCAGCTTGCGCGGAGAATTCGCGGCGTGTGGG CTGGGCTGGGTTGA |