© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g9233.t1 |
| Gene name | |
| Location | scaffold_44:3364..4926 |
| Strand | - |
| Gene length (bp) | 1562 |
| Transcript length (bp) | 1440 |
| Coding sequence length (bp) | 1440 |
| Protein length (aa) | 480 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 457 | 476 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 45.90 | 27.21 | 64.60 |
| 5d_25C | Five days - 25 degrees Celsius | 42.38 | 24.89 | 59.87 |
| 7d_25C | Seven days - 25 degrees Celsius | 50.51 | 29.79 | 71.23 |
| 10d_25C | Ten days - 25 degrees Celsius | 39.09 | 22.58 | 55.60 |
| 7d_15C | Seven days - 15 degrees Celsius | 50.66 | 30.33 | 70.99 |
| 7d_30C | Seven days - 30 degrees Celsius | 55.08 | 33.07 | 77.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.803554 | no |
| 3d_25C | 7d_25C | 0.756936 | no |
| 3d_25C | 7d_15C | 0.744139 | no |
| 3d_25C | 7d_30C | 0.491565 | no |
| 3d_25C | 10d_25C | 0.560862 | no |
| 5d_25C | 7d_25C | 0.513634 | no |
| 5d_25C | 7d_15C | 0.501823 | no |
| 5d_25C | 7d_30C | 0.273741 | no |
| 5d_25C | 10d_25C | 0.795169 | no |
| 7d_25C | 7d_15C | 0.993865 | no |
| 7d_25C | 7d_30C | 0.781026 | no |
| 7d_25C | 10d_25C | 0.300393 | no |
| 7d_15C | 7d_30C | 0.782934 | no |
| 7d_15C | 10d_25C | 0.291375 | no |
| 7d_30C | 10d_25C | 0.134572 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9233.t1 MRDLELHLSNTDPDSKDHPRCRIICAQHITCLSMEALGSGLSLDPNVFSHHIGTSFKDIEKSTGINKLCNTNIGH IPSSVGTYEHERNLQIVKRHLGRLSIANVEHAKDLTTRDSIVKSIYLHQDHPITFSVDVPRTIYVQGYQSEDDRT QAIGRFLRTRVLALQDRVLNRRIARQRFADDSMFCDQGERYSQNGLDILQHITIHVINDAKFQQVLVLFPPCPEF DGDNSDNDPYVFLDHLRKQEHTKSFKEFCLNRDKKDYESAGASESRRTMSQDVEIFSNDILENQAGTPKGLTDVV HLIRSYALNAWFDRLQTLKDQLEDLSLQSLSHRSIQHDEDPQDSEEENPTCDGLIDEEGMKGAILRYIASLDGEC QRLKIDLHAAKIGFSTTGSDSVRTLEQTMEKYTHIRSQMSNLLSETQHLLDMKNSRIQQALTTLEIKESRTFIEQ AKTVKRLIIISFLFIPLSYVCLALSMKFW* |
| Coding | >Pro_DTO377G3_2|g9233.t1 ATGCGAGACCTAGAATTACACCTTTCCAACACGGATCCTGATTCAAAGGATCACCCTCGCTGTCGAATCATCTGC GCACAACATATCACGTGTTTGAGCATGGAGGCATTGGGTAGTGGACTTTCTTTGGACCCTAATGTCTTCAGTCAC CATATCGGGACATCATTCAAGGACATTGAAAAGAGTACAGGTATCAATAAGCTCTGCAACACAAATATTGGCCAT ATTCCTTCATCTGTCGGTACCTACGAGCACGAGAGAAACCTTCAAATCGTCAAAAGGCACCTAGGGCGACTTTCC ATTGCCAATGTGGAGCATGCAAAAGATCTAACCACCCGGGATTCGATTGTCAAGTCCATCTACCTTCATCAGGAC CATCCCATCACATTTTCTGTGGATGTGCCACGAACGATCTATGTGCAAGGATATCAATCTGAGGACGACAGAACA CAGGCTATTGGAAGATTCCTACGTACAAGAGTGTTGGCACTACAGGACCGAGTGCTGAATCGTCGCATTGCTCGG CAGCGATTTGCTGACGATAGCATGTTCTGCGACCAAGGTGAACGATATTCACAAAACGGCCTTGACATCCTACAG CACATTACCATCCATGTCATAAACGACGCGAAATTTCAACAAGTCTTGGTTTTGTTTCCACCTTGTCCAGAATTT GATGGAGATAATTCAGACAACGATCCTTATGTTTTTCTTGACCATCTGAGAAAGCAAGAACATACCAAATCATTC AAGGAATTCTGTCTCAATCGGGATAAAAAGGACTATGAATCCGCAGGGGCATCGGAATCTCGACGGACTATGTCT CAAGACGTTGAAATATTCTCCAATGATATTCTTGAGAATCAAGCTGGTACCCCCAAAGGACTAACGGACGTGGTC CACCTTATACGATCTTACGCTCTGAATGCATGGTTTGATCGTCTGCAGACATTGAAAGACCAGCTTGAAGATCTC AGTCTTCAAAGCCTATCCCATCGAAGCATACAACATGACGAAGATCCACAGGATTCAGAGGAGGAAAACCCTACA TGTGATGGTCTGATTGATGAAGAAGGGATGAAAGGTGCTATTCTTCGCTACATCGCGTCACTCGATGGTGAATGC CAGCGGTTGAAAATTGATTTGCATGCGGCGAAAATAGGATTTTCCACAACCGGCTCCGACTCTGTTCGAACATTA GAACAGACAATGGAGAAGTATACTCACATACGATCCCAAATGAGCAACCTTCTCTCTGAAACCCAGCATTTACTC GACATGAAGAACAGCAGGATACAACAGGCTTTAACAACTCTCGAAATCAAAGAAAGCAGAACGTTCATCGAACAG GCAAAAACAGTGAAGAGGCTTATCATAATATCCTTCCTTTTTATACCGTTGTCCTACGTCTGCTTGGCATTAAGC ATGAAATTTTGGTAA |
| Transcript | >Pro_DTO377G3_2|g9233.t1 ATGCGAGACCTAGAATTACACCTTTCCAACACGGATCCTGATTCAAAGGATCACCCTCGCTGTCGAATCATCTGC GCACAACATATCACGTGTTTGAGCATGGAGGCATTGGGTAGTGGACTTTCTTTGGACCCTAATGTCTTCAGTCAC CATATCGGGACATCATTCAAGGACATTGAAAAGAGTACAGGTATCAATAAGCTCTGCAACACAAATATTGGCCAT ATTCCTTCATCTGTCGGTACCTACGAGCACGAGAGAAACCTTCAAATCGTCAAAAGGCACCTAGGGCGACTTTCC ATTGCCAATGTGGAGCATGCAAAAGATCTAACCACCCGGGATTCGATTGTCAAGTCCATCTACCTTCATCAGGAC CATCCCATCACATTTTCTGTGGATGTGCCACGAACGATCTATGTGCAAGGATATCAATCTGAGGACGACAGAACA CAGGCTATTGGAAGATTCCTACGTACAAGAGTGTTGGCACTACAGGACCGAGTGCTGAATCGTCGCATTGCTCGG CAGCGATTTGCTGACGATAGCATGTTCTGCGACCAAGGTGAACGATATTCACAAAACGGCCTTGACATCCTACAG CACATTACCATCCATGTCATAAACGACGCGAAATTTCAACAAGTCTTGGTTTTGTTTCCACCTTGTCCAGAATTT GATGGAGATAATTCAGACAACGATCCTTATGTTTTTCTTGACCATCTGAGAAAGCAAGAACATACCAAATCATTC AAGGAATTCTGTCTCAATCGGGATAAAAAGGACTATGAATCCGCAGGGGCATCGGAATCTCGACGGACTATGTCT CAAGACGTTGAAATATTCTCCAATGATATTCTTGAGAATCAAGCTGGTACCCCCAAAGGACTAACGGACGTGGTC CACCTTATACGATCTTACGCTCTGAATGCATGGTTTGATCGTCTGCAGACATTGAAAGACCAGCTTGAAGATCTC AGTCTTCAAAGCCTATCCCATCGAAGCATACAACATGACGAAGATCCACAGGATTCAGAGGAGGAAAACCCTACA TGTGATGGTCTGATTGATGAAGAAGGGATGAAAGGTGCTATTCTTCGCTACATCGCGTCACTCGATGGTGAATGC CAGCGGTTGAAAATTGATTTGCATGCGGCGAAAATAGGATTTTCCACAACCGGCTCCGACTCTGTTCGAACATTA GAACAGACAATGGAGAAGTATACTCACATACGATCCCAAATGAGCAACCTTCTCTCTGAAACCCAGCATTTACTC GACATGAAGAACAGCAGGATACAACAGGCTTTAACAACTCTCGAAATCAAAGAAAGCAGAACGTTCATCGAACAG GCAAAAACAGTGAAGAGGCTTATCATAATATCCTTCCTTTTTATACCGTTGTCCTACGTCTGCTTGGCATTAAGC ATGAAATTTTGGTAA |
| Gene | >Pro_DTO377G3_2|g9233.t1 ATGCGAGACCTAGAATTACACCTTTCCAACACGGATCCTGATTCAAAGGATCACCCTCGCTGTCGAATCATCTGC GCACAACATATCACGTGTTTGAGCATGGAGGCATTGGGTAGTGGACTTTCTTTGGACCCTAATGTCTTCAGTCAC CATATCGGGACATCATTCAAGGACATTGAAAAGAGTACAGGTATCAATAAGCTCTGCAACACAAATATTGGCCAT ATTCCTTCATCTGTCGGTACCTACGAGCACGAGAGAAACCTTCAAATCGTCAAAAGGCACCTAGGGCGACTTTCC ATTGCCAATGTGGAGCATGCAAAAGATCTAACCACCCGGGATTCGATTGTCAAGTCCATCTACCTTCATCAGGAC CATCCCATCACATTTTCTGTGGATGTGCCACGAACGATCTATGTGCAAGGATATCAATCTGAGGACGACAGAACA CAGGCTATTGGAAGATTCCTACGTACAAGAGTGTTGGCACTACAGGACCGAGTGCTGAATCGTCGCATTGCTCGG CAGCGATTTGCTGACGATAGCATGTTCTGCGACCAAGGTGAACGATATTCACAAAACGGCCTTGACATCCTACAG CACATTACCATCCATGTCATAAACGACGCGAAATTTCAACAAGGTATGGATGACTCTGTGTTTACACATCAATGA GATCGCACAATTGACCAATTTACCAATTAACTAATTTTGTTAGTCTTGGTTTTGTTTCCACCTTGTCCAGAATTT GATGGAGATAATTCAGACAACGATCCTTATGTTTTTCTTGACCATCTGAGAAAGCAAGAACATACCAAATCATTC AAGGAATTCTGTCTCAATCGGGATAAAAAGGACTATGAATCCGCAGGGGCATCGGAATCTCGACGGACTATGTCT CAAGACGTTGAAATATTCTCCAATGATATTCTTGAGAATCAAGCTGGTACCCCCAAAGGACTAACGGACGTGGTC CACCTTATACGATCTTACGCTCTGAATGCATGGTTTGATCGTCTGCAGACATTGAAAGACCAGCTTGAAGATCTC AGTCTTCAAAGCCTATCCCATCGAAGCATACAACATGACGAAGATCCACAGGATTCAGAGGAGGAAAACCCTACA TGTGATGGTCTGATTGATGAAGAAGGGATGAAAGGTGCTATTCTTCGCTACATCGCGTCACTCGATGGTGAATGC CAGCGGTTGAAAATTGATTTGCATGCGGCGAAAATAGGATTTTCCACAACCGGCTCCGACTCTGTTCGAACATTA GAACAGACAATGGAGAAGTATACTCACATACGATCCCAAATGAGCAACCTTCTCTCTGAAACCCAGCATTTACTC GACATGAAGAACAGCAGGATACAACAGGCTTTAACAACTCTCGAAATCAAAGAAAGCAGAACGTTCATCGAACAG GCAAAAACAGTGAAGAGGTATGATGTTGGCCAATCTTGAGAGAATTAGGACTGACATATGCTAGGCTTATCATAA TATCCTTCCTTTTTATACCGTTGTCCTACGTCTGCTTGGCATTAAGCATGAAATTTTGGTAA |