Protein ID | Pro_DTO377G3_2|g92.t1 |
Gene name | |
Location | scaffold_01:229631..232257 |
Strand | - |
Gene length (bp) | 2626 |
Transcript length (bp) | 2556 |
Coding sequence length (bp) | 2556 |
Protein length (aa) | 852 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05026 | DCP2 | Dcp2, box A domain | 1.4E-30 | 10 | 93 |
PF00293 | NUDIX | NUDIX domain | 2.2E-18 | 98 | 218 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0097159 | organic cyclic compound binding | No |
GO:0005488 | binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 32.81 | 19.88 | 45.74 |
5d_25C | Five days - 25 degrees Celsius | 33.21 | 20.13 | 46.30 |
7d_25C | Seven days - 25 degrees Celsius | 32.59 | 19.72 | 45.45 |
10d_25C | Ten days - 25 degrees Celsius | 33.21 | 20.08 | 46.33 |
7d_15C | Seven days - 15 degrees Celsius | 40.34 | 24.72 | 55.96 |
7d_30C | Seven days - 30 degrees Celsius | 30.34 | 18.24 | 42.43 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.973455 | no |
3d_25C | 7d_25C | 0.986052 | no |
3d_25C | 7d_15C | 0.395670 | no |
3d_25C | 7d_30C | 0.801418 | no |
3d_25C | 10d_25C | 0.972956 | no |
5d_25C | 7d_25C | 0.957067 | no |
5d_25C | 7d_15C | 0.431016 | no |
5d_25C | 7d_30C | 0.763711 | no |
5d_25C | 10d_25C | 0.999290 | no |
7d_25C | 7d_15C | 0.375885 | no |
7d_25C | 7d_30C | 0.819958 | no |
7d_25C | 10d_25C | 0.956990 | no |
7d_15C | 7d_30C | 0.211485 | no |
7d_15C | 10d_25C | 0.429237 | no |
7d_30C | 10d_25C | 0.758241 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g92.t1 MIETNMRLEDWLDDLCVRFIINLPREELESVERICFQVEEAQWFYEDFIRPLDPALPSMNLKTFAMRIFQHCPLM SSWSHYHHLAAFQEFLDYKTRVPVRGAIMLNQDMDEVVLVKGWKKGANWSFPRGKINKGEKDLDCAIREVYEETG FDVREANLVKNDDDVKYIEITMREQHMRLYVFRGVLRDTYFEPRTRKEISKIEWYKLSELPTLKKNKQHDEGLAV ANANKFYMVAPFLSPLKKWIAQQKKLDARANQVAQAEGYLSMDENGPNNGTPGMSLAKMAIPSDLPEVTSAQDAS DHLKRLLNICAAPAQVNTPGSEPARASVVDPSKASGLLALLQRGRQETSPRDSLGNAMAPPNASQSNVQSAEQRP HLGPNFFPGFPQQQQNMGPSPFMRQNSTPFHTVPSQPHIQHFLNGPQALPGDAFPTSAPNWYPKPNAIPQFPQTT TMSQYQHHNQPPMAPGVLNPSHMPAPFQRTGDPEFSESAQLSQTRGPVVPPASKLPPPKLTSHSLALLEAFKVKT PKGPGPANLAAPMQGSSHTRKTSQHQDSLLGLLKGAQTARVSEPAELLGNPVVPSAAPSEKQILQRPRDHQPTHQ IAATRSLPGAGQISATVSGPLNVPQFETYGQPPKSNTGTNRKNHVNRREQPQLQQLSSPITILSRPHSAKREVSS SRPVAQATQVLPAKIPEAPEPIRNFQPQILRRSEKPGYEALMATAPQTEAIERKLSLPGVGIDTQGLAAQSNFDR RPSQTAEQKASLLSLFSKAPVSPSPVSTTAFDSRAVNQQPAAFSGFVSPISSRNRPSSGDSISRHGTPSDAGAHT NSQQVSSPSNKAFLLGFLEGVAKGNK* |
Coding | >Pro_DTO377G3_2|g92.t1 ATGATCGAAACAAATATGCGGTTAGAAGATTGGCTGGATGATTTGTGCGTCCGTTTCATTATCAATCTTCCGCGC GAGGAGCTTGAGTCGGTTGAACGGATATGTTTTCAAGTTGAAGAAGCACAATGGTTCTACGAAGACTTCATTCGT CCGCTTGACCCCGCGCTACCGTCAATGAACTTGAAGACATTTGCTATGCGCATTTTCCAACATTGCCCGCTTATG TCGTCATGGTCTCATTACCATCATTTGGCTGCCTTCCAAGAATTCCTTGATTACAAGACGCGCGTGCCGGTCCGC GGTGCAATCATGTTGAACCAAGATATGGACGAGGTTGTTTTGGTTAAGGGCTGGAAGAAGGGCGCCAACTGGAGT TTTCCCCGTGGTAAAATCAACAAGGGCGAAAAGGATCTTGATTGTGCTATTCGTGAGGTCTATGAAGAGACTGGG TTCGATGTTCGGGAGGCCAACTTGGTTAAAAACGACGACGACGTTAAATACATTGAGATTACGATGAGAGAGCAG CATATGCGACTCTACGTCTTTCGAGGTGTGCTCCGTGATACTTACTTTGAACCGCGTACCCGAAAGGAAATCAGC AAGATTGAGTGGTACAAGCTTTCAGAGCTGCCAACGCTGAAGAAAAATAAACAGCACGATGAAGGACTTGCAGTC GCAAATGCGAACAAGTTCTACATGGTTGCCCCGTTTCTCAGCCCACTGAAAAAGTGGATAGCGCAGCAGAAGAAG CTTGATGCGAGAGCAAACCAAGTTGCACAGGCTGAGGGATATCTTTCTATGGATGAGAATGGCCCTAACAATGGC ACTCCAGGGATGTCCCTCGCAAAAATGGCCATTCCAAGTGATCTTCCTGAGGTGACCTCAGCGCAAGATGCTTCG GATCACCTCAAACGCCTTTTGAACATCTGCGCCGCACCGGCGCAAGTTAATACACCAGGCTCCGAGCCAGCTCGG GCTTCTGTCGTTGACCCATCCAAGGCGAGTGGGCTCCTTGCTTTGTTGCAGCGTGGGCGTCAAGAGACATCCCCT CGGGATTCTCTTGGTAATGCTATGGCGCCACCTAATGCATCTCAGTCCAACGTCCAATCTGCAGAACAACGGCCT CATTTGGGTCCTAATTTCTTCCCCGGCTTCCCTCAGCAGCAGCAGAACATGGGTCCGTCTCCTTTCATGCGGCAG AACTCCACACCATTCCACACCGTCCCATCCCAACCTCATATCCAGCACTTCTTGAATGGCCCACAAGCTCTTCCC GGCGATGCATTCCCGACCAGTGCGCCTAATTGGTATCCTAAACCTAACGCGATACCACAATTCCCCCAAACCACC ACTATGTCTCAATATCAGCACCATAATCAGCCTCCTATGGCCCCTGGCGTTCTGAACCCGAGCCATATGCCCGCA CCGTTTCAACGGACAGGAGACCCTGAGTTTTCTGAATCCGCTCAGTTATCTCAAACCCGGGGCCCAGTCGTCCCA CCGGCGAGCAAATTGCCTCCACCGAAGCTCACAAGCCATTCCCTGGCGCTCTTGGAAGCCTTCAAGGTTAAGACC CCCAAGGGCCCGGGTCCAGCGAATTTGGCGGCTCCCATGCAGGGCTCTTCTCACACACGTAAGACGTCTCAGCAC CAGGATAGTCTTTTGGGTTTGCTCAAGGGTGCGCAAACTGCTCGTGTTTCTGAACCAGCGGAATTGTTAGGCAAT CCCGTTGTACCCTCTGCGGCACCTTCAGAGAAGCAGATTCTTCAGCGTCCTCGCGATCACCAACCCACGCACCAG ATTGCCGCAACGAGAAGCCTTCCGGGAGCAGGTCAGATATCGGCTACCGTGTCTGGACCGTTGAACGTGCCACAA TTTGAGACATATGGCCAACCACCTAAGTCAAACACTGGAACAAACCGAAAGAACCACGTGAACCGGCGAGAGCAA CCCCAGCTCCAGCAGCTATCCTCACCGATTACCATTCTATCGCGACCCCATTCTGCCAAACGGGAGGTATCCTCG TCGAGACCCGTTGCACAAGCAACCCAGGTTCTGCCTGCGAAAATACCCGAGGCGCCTGAACCTATCAGGAATTTC CAGCCGCAGATTCTGCGTCGGTCAGAAAAACCCGGATATGAAGCATTAATGGCCACAGCTCCTCAGACAGAAGCT ATTGAACGCAAATTGAGTTTGCCAGGCGTTGGGATCGATACCCAGGGCCTAGCCGCACAGAGCAACTTTGACCGT CGACCGAGTCAAACTGCTGAGCAGAAAGCTTCACTTTTGTCTCTCTTTAGTAAAGCGCCTGTCTCTCCGTCGCCT GTTTCTACGACCGCGTTCGACTCCCGAGCTGTCAACCAGCAGCCGGCAGCATTCTCGGGTTTTGTCAGCCCAATT TCGTCCCGCAATCGTCCGAGCAGCGGTGATTCTATTTCTCGGCATGGTACGCCATCTGATGCTGGCGCACACACC AATAGTCAGCAGGTTTCTTCTCCGAGCAACAAGGCGTTCTTGCTTGGGTTCTTGGAGGGAGTGGCTAAGGGCAAT AAGTAG |
Transcript | >Pro_DTO377G3_2|g92.t1 ATGATCGAAACAAATATGCGGTTAGAAGATTGGCTGGATGATTTGTGCGTCCGTTTCATTATCAATCTTCCGCGC GAGGAGCTTGAGTCGGTTGAACGGATATGTTTTCAAGTTGAAGAAGCACAATGGTTCTACGAAGACTTCATTCGT CCGCTTGACCCCGCGCTACCGTCAATGAACTTGAAGACATTTGCTATGCGCATTTTCCAACATTGCCCGCTTATG TCGTCATGGTCTCATTACCATCATTTGGCTGCCTTCCAAGAATTCCTTGATTACAAGACGCGCGTGCCGGTCCGC GGTGCAATCATGTTGAACCAAGATATGGACGAGGTTGTTTTGGTTAAGGGCTGGAAGAAGGGCGCCAACTGGAGT TTTCCCCGTGGTAAAATCAACAAGGGCGAAAAGGATCTTGATTGTGCTATTCGTGAGGTCTATGAAGAGACTGGG TTCGATGTTCGGGAGGCCAACTTGGTTAAAAACGACGACGACGTTAAATACATTGAGATTACGATGAGAGAGCAG CATATGCGACTCTACGTCTTTCGAGGTGTGCTCCGTGATACTTACTTTGAACCGCGTACCCGAAAGGAAATCAGC AAGATTGAGTGGTACAAGCTTTCAGAGCTGCCAACGCTGAAGAAAAATAAACAGCACGATGAAGGACTTGCAGTC GCAAATGCGAACAAGTTCTACATGGTTGCCCCGTTTCTCAGCCCACTGAAAAAGTGGATAGCGCAGCAGAAGAAG CTTGATGCGAGAGCAAACCAAGTTGCACAGGCTGAGGGATATCTTTCTATGGATGAGAATGGCCCTAACAATGGC ACTCCAGGGATGTCCCTCGCAAAAATGGCCATTCCAAGTGATCTTCCTGAGGTGACCTCAGCGCAAGATGCTTCG GATCACCTCAAACGCCTTTTGAACATCTGCGCCGCACCGGCGCAAGTTAATACACCAGGCTCCGAGCCAGCTCGG GCTTCTGTCGTTGACCCATCCAAGGCGAGTGGGCTCCTTGCTTTGTTGCAGCGTGGGCGTCAAGAGACATCCCCT CGGGATTCTCTTGGTAATGCTATGGCGCCACCTAATGCATCTCAGTCCAACGTCCAATCTGCAGAACAACGGCCT CATTTGGGTCCTAATTTCTTCCCCGGCTTCCCTCAGCAGCAGCAGAACATGGGTCCGTCTCCTTTCATGCGGCAG AACTCCACACCATTCCACACCGTCCCATCCCAACCTCATATCCAGCACTTCTTGAATGGCCCACAAGCTCTTCCC GGCGATGCATTCCCGACCAGTGCGCCTAATTGGTATCCTAAACCTAACGCGATACCACAATTCCCCCAAACCACC ACTATGTCTCAATATCAGCACCATAATCAGCCTCCTATGGCCCCTGGCGTTCTGAACCCGAGCCATATGCCCGCA CCGTTTCAACGGACAGGAGACCCTGAGTTTTCTGAATCCGCTCAGTTATCTCAAACCCGGGGCCCAGTCGTCCCA CCGGCGAGCAAATTGCCTCCACCGAAGCTCACAAGCCATTCCCTGGCGCTCTTGGAAGCCTTCAAGGTTAAGACC CCCAAGGGCCCGGGTCCAGCGAATTTGGCGGCTCCCATGCAGGGCTCTTCTCACACACGTAAGACGTCTCAGCAC CAGGATAGTCTTTTGGGTTTGCTCAAGGGTGCGCAAACTGCTCGTGTTTCTGAACCAGCGGAATTGTTAGGCAAT CCCGTTGTACCCTCTGCGGCACCTTCAGAGAAGCAGATTCTTCAGCGTCCTCGCGATCACCAACCCACGCACCAG ATTGCCGCAACGAGAAGCCTTCCGGGAGCAGGTCAGATATCGGCTACCGTGTCTGGACCGTTGAACGTGCCACAA TTTGAGACATATGGCCAACCACCTAAGTCAAACACTGGAACAAACCGAAAGAACCACGTGAACCGGCGAGAGCAA CCCCAGCTCCAGCAGCTATCCTCACCGATTACCATTCTATCGCGACCCCATTCTGCCAAACGGGAGGTATCCTCG TCGAGACCCGTTGCACAAGCAACCCAGGTTCTGCCTGCGAAAATACCCGAGGCGCCTGAACCTATCAGGAATTTC CAGCCGCAGATTCTGCGTCGGTCAGAAAAACCCGGATATGAAGCATTAATGGCCACAGCTCCTCAGACAGAAGCT ATTGAACGCAAATTGAGTTTGCCAGGCGTTGGGATCGATACCCAGGGCCTAGCCGCACAGAGCAACTTTGACCGT CGACCGAGTCAAACTGCTGAGCAGAAAGCTTCACTTTTGTCTCTCTTTAGTAAAGCGCCTGTCTCTCCGTCGCCT GTTTCTACGACCGCGTTCGACTCCCGAGCTGTCAACCAGCAGCCGGCAGCATTCTCGGGTTTTGTCAGCCCAATT TCGTCCCGCAATCGTCCGAGCAGCGGTGATTCTATTTCTCGGCATGGTACGCCATCTGATGCTGGCGCACACACC AATAGTCAGCAGGTTTCTTCTCCGAGCAACAAGGCGTTCTTGCTTGGGTTCTTGGAGGGAGTGGCTAAGGGCAAT AAGTAG |
Gene | >Pro_DTO377G3_2|g92.t1 ATGATCGAAACAAATATGCGGTTAGAAGATTGTGAGTGCCTGGTTGATCGATCGGAATGACGACGGGCTGCTGAC TGAGGCCGGTGGGCCGTTGCTGACAGGGCTGGATGATTTGTGCGTCCGTTTCATTATCAATCTTCCGCGCGAGGA GCTTGAGTCGGTTGAACGGATATGTTTTCAAGTTGAAGAAGCACAATGGTTCTACGAAGACTTCATTCGTCCGCT TGACCCCGCGCTACCGTCAATGAACTTGAAGACATTTGCTATGCGCATTTTCCAACATTGCCCGCTTATGTCGTC ATGGTCTCATTACCATCATTTGGCTGCCTTCCAAGAATTCCTTGATTACAAGACGCGCGTGCCGGTCCGCGGTGC AATCATGTTGAACCAAGATATGGACGAGGTTGTTTTGGTTAAGGGCTGGAAGAAGGGCGCCAACTGGAGTTTTCC CCGTGGTAAAATCAACAAGGGCGAAAAGGATCTTGATTGTGCTATTCGTGAGGTCTATGAAGAGACTGGGTTCGA TGTTCGGGAGGCCAACTTGGTTAAAAACGACGACGACGTTAAATACATTGAGATTACGATGAGAGAGCAGCATAT GCGACTCTACGTCTTTCGAGGTGTGCTCCGTGATACTTACTTTGAACCGCGTACCCGAAAGGAAATCAGCAAGAT TGAGTGGTACAAGCTTTCAGAGCTGCCAACGCTGAAGAAAAATAAACAGCACGATGAAGGACTTGCAGTCGCAAA TGCGAACAAGTTCTACATGGTTGCCCCGTTTCTCAGCCCACTGAAAAAGTGGATAGCGCAGCAGAAGAAGCTTGA TGCGAGAGCAAACCAAGTTGCACAGGCTGAGGGATATCTTTCTATGGATGAGAATGGCCCTAACAATGGCACTCC AGGGATGTCCCTCGCAAAAATGGCCATTCCAAGTGATCTTCCTGAGGTGACCTCAGCGCAAGATGCTTCGGATCA CCTCAAACGCCTTTTGAACATCTGCGCCGCACCGGCGCAAGTTAATACACCAGGCTCCGAGCCAGCTCGGGCTTC TGTCGTTGACCCATCCAAGGCGAGTGGGCTCCTTGCTTTGTTGCAGCGTGGGCGTCAAGAGACATCCCCTCGGGA TTCTCTTGGTAATGCTATGGCGCCACCTAATGCATCTCAGTCCAACGTCCAATCTGCAGAACAACGGCCTCATTT GGGTCCTAATTTCTTCCCCGGCTTCCCTCAGCAGCAGCAGAACATGGGTCCGTCTCCTTTCATGCGGCAGAACTC CACACCATTCCACACCGTCCCATCCCAACCTCATATCCAGCACTTCTTGAATGGCCCACAAGCTCTTCCCGGCGA TGCATTCCCGACCAGTGCGCCTAATTGGTATCCTAAACCTAACGCGATACCACAATTCCCCCAAACCACCACTAT GTCTCAATATCAGCACCATAATCAGCCTCCTATGGCCCCTGGCGTTCTGAACCCGAGCCATATGCCCGCACCGTT TCAACGGACAGGAGACCCTGAGTTTTCTGAATCCGCTCAGTTATCTCAAACCCGGGGCCCAGTCGTCCCACCGGC GAGCAAATTGCCTCCACCGAAGCTCACAAGCCATTCCCTGGCGCTCTTGGAAGCCTTCAAGGTTAAGACCCCCAA GGGCCCGGGTCCAGCGAATTTGGCGGCTCCCATGCAGGGCTCTTCTCACACACGTAAGACGTCTCAGCACCAGGA TAGTCTTTTGGGTTTGCTCAAGGGTGCGCAAACTGCTCGTGTTTCTGAACCAGCGGAATTGTTAGGCAATCCCGT TGTACCCTCTGCGGCACCTTCAGAGAAGCAGATTCTTCAGCGTCCTCGCGATCACCAACCCACGCACCAGATTGC CGCAACGAGAAGCCTTCCGGGAGCAGGTCAGATATCGGCTACCGTGTCTGGACCGTTGAACGTGCCACAATTTGA GACATATGGCCAACCACCTAAGTCAAACACTGGAACAAACCGAAAGAACCACGTGAACCGGCGAGAGCAACCCCA GCTCCAGCAGCTATCCTCACCGATTACCATTCTATCGCGACCCCATTCTGCCAAACGGGAGGTATCCTCGTCGAG ACCCGTTGCACAAGCAACCCAGGTTCTGCCTGCGAAAATACCCGAGGCGCCTGAACCTATCAGGAATTTCCAGCC GCAGATTCTGCGTCGGTCAGAAAAACCCGGATATGAAGCATTAATGGCCACAGCTCCTCAGACAGAAGCTATTGA ACGCAAATTGAGTTTGCCAGGCGTTGGGATCGATACCCAGGGCCTAGCCGCACAGAGCAACTTTGACCGTCGACC GAGTCAAACTGCTGAGCAGAAAGCTTCACTTTTGTCTCTCTTTAGTAAAGCGCCTGTCTCTCCGTCGCCTGTTTC TACGACCGCGTTCGACTCCCGAGCTGTCAACCAGCAGCCGGCAGCATTCTCGGGTTTTGTCAGCCCAATTTCGTC CCGCAATCGTCCGAGCAGCGGTGATTCTATTTCTCGGCATGGTACGCCATCTGATGCTGGCGCACACACCAATAG TCAGCAGGTTTCTTCTCCGAGCAACAAGGCGTTCTTGCTTGGGTTCTTGGAGGGAGTGGCTAAGGGCAATAAGTA G |