Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9199.t1
Gene name
Locationscaffold_43:70235..70753
Strand-
Gene length (bp)518
Transcript length (bp)459
Coding sequence length (bp)459
Protein length (aa) 153

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.1E-16 11 84

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 77.02 36.94 117.10
5d_25C Five days - 25 degrees Celsius 128.59 69.71 187.46
7d_25C Seven days - 25 degrees Celsius 169.72 96.54 242.90
10d_25C Ten days - 25 degrees Celsius 263.98 155.79 372.17
7d_15C Seven days - 15 degrees Celsius 66.48 30.50 102.46
7d_30C Seven days - 30 degrees Celsius 145.74 80.28 211.19

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.056531 no
3d_25C 7d_25C 0.001278 yes
3d_25C 7d_15C 0.703316 no
3d_25C 7d_30C 0.010411 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.302532 no
5d_25C 7d_15C 0.016924 yes
5d_25C 7d_30C 0.709470 no
5d_25C 10d_25C 0.000700 yes
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.622463 no
7d_25C 10d_25C 0.053684 no
7d_15C 7d_30C 0.002297 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.007779 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9199.t1
MSETTRLKSTVYVGGLDQGVTTLTLAEAFVPFGEVVDISLPKPDQPNSAEVHRGFGYVEFDLPQDAKEAIDNMDG
SEIYGRTIKVAAAKPQKDANEGLGSKTAIWEQEGYLAKHAVSEEDREAAEEAQAASSRPQDPMQGLEQLDVAGPK
PE*
Coding >Pro_DTO377G3_2|g9199.t1
ATGAGCGAAACCACGCGGCTCAAGAGCACCGTCTACGTGGGAGGTCTTGACCAAGGGGTGACCACGCTCACACTT
GCGGAGGCTTTTGTTCCATTCGGCGAAGTTGTTGATATCTCGCTGCCCAAACCGGACCAACCCAACTCGGCCGAA
GTTCACCGCGGATTTGGATATGTGGAATTTGATCTGCCGCAGGACGCTAAAGAGGCAATCGACAATATGGATGGC
AGTGAGATCTACGGGCGTACGATCAAAGTCGCCGCTGCAAAGCCACAGAAGGATGCCAATGAAGGACTAGGCAGC
AAGACTGCGATTTGGGAGCAGGAGGGTTATTTGGCCAAGCATGCCGTCAGCGAGGAGGATCGGGAAGCGGCAGAG
GAGGCTCAGGCTGCAAGCAGTCGTCCGCAAGATCCTATGCAGGGATTGGAACAATTAGATGTTGCTGGGCCAAAG
CCCGAGTGA
Transcript >Pro_DTO377G3_2|g9199.t1
ATGAGCGAAACCACGCGGCTCAAGAGCACCGTCTACGTGGGAGGTCTTGACCAAGGGGTGACCACGCTCACACTT
GCGGAGGCTTTTGTTCCATTCGGCGAAGTTGTTGATATCTCGCTGCCCAAACCGGACCAACCCAACTCGGCCGAA
GTTCACCGCGGATTTGGATATGTGGAATTTGATCTGCCGCAGGACGCTAAAGAGGCAATCGACAATATGGATGGC
AGTGAGATCTACGGGCGTACGATCAAAGTCGCCGCTGCAAAGCCACAGAAGGATGCCAATGAAGGACTAGGCAGC
AAGACTGCGATTTGGGAGCAGGAGGGTTATTTGGCCAAGCATGCCGTCAGCGAGGAGGATCGGGAAGCGGCAGAG
GAGGCTCAGGCTGCAAGCAGTCGTCCGCAAGATCCTATGCAGGGATTGGAACAATTAGATGTTGCTGGGCCAAAG
CCCGAGTGA
Gene >Pro_DTO377G3_2|g9199.t1
ATGAGCGAAACCACGCGGCTCAAGAGCACCGTCTACGTGGGAGGTCTTGACCAAGGGGTGACCACGCTCACACTT
GCGGAGGCTTTTGTTCCATTCGGCGAAGTTGTTGATATCTCGCTGCCCAAACCGGACCAACCCAACTCGGCCGAA
GTTCACCGCGGATTTGGATATGTGGAATTTGATCTGCCGCAGGACGCTAAAGAGGCAATCGACAATATGGATGGC
AGTGAGATCTACGGGCGTACGATCAAAGTCGCCGCTGCAAAGCCACAGAAGGATGCCAATGAAGGACTAGGCAGC
AAGACTGCGATTTGGGAGCAGGTTCGTTGGGATCGATTTCATATCTAACTGTAACCTATACTAACCGATGCATTC
TGTAGGAGGGTTATTTGGCCAAGCATGCCGTCAGCGAGGAGGATCGGGAAGCGGCAGAGGAGGCTCAGGCTGCAA
GCAGTCGTCCGCAAGATCCTATGCAGGGATTGGAACAATTAGATGTTGCTGGGCCAAAGCCCGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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