© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9199.t1 |
| Gene name | |
| Location | scaffold_43:70235..70753 |
| Strand | - |
| Gene length (bp) | 518 |
| Transcript length (bp) | 459 |
| Coding sequence length (bp) | 459 |
| Protein length (aa) | 153 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.1E-16 | 11 | 84 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 77.02 | 36.94 | 117.10 |
| 5d_25C | Five days - 25 degrees Celsius | 128.59 | 69.71 | 187.46 |
| 7d_25C | Seven days - 25 degrees Celsius | 169.72 | 96.54 | 242.90 |
| 10d_25C | Ten days - 25 degrees Celsius | 263.98 | 155.79 | 372.17 |
| 7d_15C | Seven days - 15 degrees Celsius | 66.48 | 30.50 | 102.46 |
| 7d_30C | Seven days - 30 degrees Celsius | 145.74 | 80.28 | 211.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.056531 | no |
| 3d_25C | 7d_25C | 0.001278 | yes |
| 3d_25C | 7d_15C | 0.703316 | no |
| 3d_25C | 7d_30C | 0.010411 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.302532 | no |
| 5d_25C | 7d_15C | 0.016924 | yes |
| 5d_25C | 7d_30C | 0.709470 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.622463 | no |
| 7d_25C | 10d_25C | 0.053684 | no |
| 7d_15C | 7d_30C | 0.002297 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.007779 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9199.t1 MSETTRLKSTVYVGGLDQGVTTLTLAEAFVPFGEVVDISLPKPDQPNSAEVHRGFGYVEFDLPQDAKEAIDNMDG SEIYGRTIKVAAAKPQKDANEGLGSKTAIWEQEGYLAKHAVSEEDREAAEEAQAASSRPQDPMQGLEQLDVAGPK PE* |
| Coding | >Pro_DTO377G3_2|g9199.t1 ATGAGCGAAACCACGCGGCTCAAGAGCACCGTCTACGTGGGAGGTCTTGACCAAGGGGTGACCACGCTCACACTT GCGGAGGCTTTTGTTCCATTCGGCGAAGTTGTTGATATCTCGCTGCCCAAACCGGACCAACCCAACTCGGCCGAA GTTCACCGCGGATTTGGATATGTGGAATTTGATCTGCCGCAGGACGCTAAAGAGGCAATCGACAATATGGATGGC AGTGAGATCTACGGGCGTACGATCAAAGTCGCCGCTGCAAAGCCACAGAAGGATGCCAATGAAGGACTAGGCAGC AAGACTGCGATTTGGGAGCAGGAGGGTTATTTGGCCAAGCATGCCGTCAGCGAGGAGGATCGGGAAGCGGCAGAG GAGGCTCAGGCTGCAAGCAGTCGTCCGCAAGATCCTATGCAGGGATTGGAACAATTAGATGTTGCTGGGCCAAAG CCCGAGTGA |
| Transcript | >Pro_DTO377G3_2|g9199.t1 ATGAGCGAAACCACGCGGCTCAAGAGCACCGTCTACGTGGGAGGTCTTGACCAAGGGGTGACCACGCTCACACTT GCGGAGGCTTTTGTTCCATTCGGCGAAGTTGTTGATATCTCGCTGCCCAAACCGGACCAACCCAACTCGGCCGAA GTTCACCGCGGATTTGGATATGTGGAATTTGATCTGCCGCAGGACGCTAAAGAGGCAATCGACAATATGGATGGC AGTGAGATCTACGGGCGTACGATCAAAGTCGCCGCTGCAAAGCCACAGAAGGATGCCAATGAAGGACTAGGCAGC AAGACTGCGATTTGGGAGCAGGAGGGTTATTTGGCCAAGCATGCCGTCAGCGAGGAGGATCGGGAAGCGGCAGAG GAGGCTCAGGCTGCAAGCAGTCGTCCGCAAGATCCTATGCAGGGATTGGAACAATTAGATGTTGCTGGGCCAAAG CCCGAGTGA |
| Gene | >Pro_DTO377G3_2|g9199.t1 ATGAGCGAAACCACGCGGCTCAAGAGCACCGTCTACGTGGGAGGTCTTGACCAAGGGGTGACCACGCTCACACTT GCGGAGGCTTTTGTTCCATTCGGCGAAGTTGTTGATATCTCGCTGCCCAAACCGGACCAACCCAACTCGGCCGAA GTTCACCGCGGATTTGGATATGTGGAATTTGATCTGCCGCAGGACGCTAAAGAGGCAATCGACAATATGGATGGC AGTGAGATCTACGGGCGTACGATCAAAGTCGCCGCTGCAAAGCCACAGAAGGATGCCAATGAAGGACTAGGCAGC AAGACTGCGATTTGGGAGCAGGTTCGTTGGGATCGATTTCATATCTAACTGTAACCTATACTAACCGATGCATTC TGTAGGAGGGTTATTTGGCCAAGCATGCCGTCAGCGAGGAGGATCGGGAAGCGGCAGAGGAGGCTCAGGCTGCAA GCAGTCGTCCGCAAGATCCTATGCAGGGATTGGAACAATTAGATGTTGCTGGGCCAAAGCCCGAGTGA |