© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9192.t1 |
| Gene name | |
| Location | scaffold_43:56578..58638 |
| Strand | + |
| Gene length (bp) | 2060 |
| Transcript length (bp) | 1590 |
| Coding sequence length (bp) | 1590 |
| Protein length (aa) | 530 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.4E-23 | 71 | 437 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 134 | 156 | 22 |
| 2 | 163 | 185 | 22 |
| 3 | 195 | 217 | 22 |
| 4 | 224 | 246 | 22 |
| 5 | 330 | 352 | 22 |
| 6 | 359 | 381 | 22 |
| 7 | 385 | 407 | 22 |
| 8 | 420 | 442 | 22 |
| 9 | 452 | 474 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.33 | 0.0 | 0.79 |
| 5d_25C | Five days - 25 degrees Celsius | 0.26 | 0.0 | 0.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.46 | 0.0 | 1.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.27 | 0.0 | 0.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.31 | 0.0 | 0.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.14 | 0.0 | 0.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9192.t1 MAVEDHKPGFVAEAQVHEESENDFINTPKLPDQFADESFKLFSKIQVTDPTPEEAIQIRNKCLWRVLPFLCIGYH LMYVDKQTQLGSSAILGIMQDAHLNSNQYNWLSSIFYFGYLLAEWPQNWALQRFPVGKWLAGNLIIWGGITLLHI PCNSFASLFVVRFFLGVAEACIVPAFLLSMSMFFTYGEQAVMMPVMWSIGNASPITSGLLSYGVLWIDTGSFSPW KWFMVITGILTVIFGVFVYFFFPDSPIHANFLTHEERAKAILRIKENHSGIEQKVFKRYQFIEAIQDPKTWLFFL HAWSQEMANGVTNQYSLIIKSFGFTVLQTTLLGTVTGVVSFFSLISAAITLYHTKNCRAWISLIAYIPGALSSIL LLALPWSNRWGLIVGIWIRSTTGIPYAVVMIWAANASAGHTKKTTVIALYHIGYGLGNIISPQLFRPEMKPRYRP TWIILLVVAAILPSIIIIALRIYLSRENKRRDKLAEFNQVASNGVVETVDSDGGKVARVVDNSQLDLTDRENLTF RYVL* |
| Coding | >Pro_DTO377G3_2|g9192.t1 ATGGCAGTAGAAGACCATAAACCTGGCTTTGTGGCAGAAGCACAAGTCCATGAAGAAAGTGAAAATGATTTCATC AACACGCCAAAGCTCCCTGATCAATTTGCCGATGAGAGTTTTAAGCTATTCTCGAAAATCCAAGTCACAGACCCG ACTCCCGAAGAAGCAATACAGATTCGCAACAAATGCTTATGGCGGGTTTTACCCTTTCTTTGCATTGGATATCAC TTGATGTATGTCGATAAGCAAACGCAGCTTGGAAGTTCTGCGATCCTAGGGATCATGCAAGATGCGCATCTAAAC TCGAATCAATATAACTGGCTCTCTTCAATTTTCTATTTTGGGTATCTTTTGGCTGAATGGCCGCAGAATTGGGCC TTGCAGCGGTTTCCTGTTGGGAAGTGGCTGGCTGGCAATTTGATAATATGGGGTGGAATCACTCTCTTGCATATC CCTTGCAACAGCTTTGCATCTCTTTTTGTTGTTCGCTTTTTCCTTGGGGTAGCAGAAGCATGCATCGTTCCAGCA TTCCTGCTTTCAATGTCCATGTTCTTTACTTATGGCGAGCAGGCCGTCATGATGCCGGTTATGTGGTCAATTGGT AATGCAAGTCCTATCACGTCAGGCTTGTTATCTTATGGTGTTCTTTGGATTGATACGGGCAGCTTTTCTCCGTGG AAATGGTTCATGGTGATTACGGGTATTCTCACAGTCATTTTCGGTGTCTTTGTCTATTTCTTCTTTCCCGACAGT CCTATCCATGCCAATTTCTTAACACACGAGGAACGTGCGAAGGCTATTCTACGGATCAAAGAGAACCACTCCGGA ATCGAGCAAAAGGTTTTCAAAAGATATCAGTTTATTGAAGCAATTCAAGACCCCAAAACCTGGCTCTTCTTCCTA CACGCCTGGTCCCAGGAAATGGCAAATGGAGTCACGAATCAATATTCACTAATCATCAAGTCATTTGGTTTCACC GTTCTTCAAACAACACTATTAGGAACCGTCACGGGTGTGGTGTCGTTCTTTTCTCTCATATCAGCTGCAATCACT TTGTATCACACCAAGAATTGCCGAGCATGGATATCGCTCATTGCATACATTCCAGGTGCTCTTTCAAGTATCCTT CTGCTAGCCTTGCCCTGGTCCAATCGATGGGGTCTTATCGTCGGAATCTGGATTAGATCTACAACCGGCATCCCA TATGCTGTTGTGATGATCTGGGCTGCCAATGCGTCCGCGGGTCATACGAAGAAAACTACCGTCATTGCGCTTTAT CATATTGGATACGGACTGGGAAATATCATCTCTCCGCAATTATTCCGGCCGGAAATGAAGCCTCGGTACAGACCA ACTTGGATTATTTTGCTTGTGGTTGCTGCGATTCTTCCTTCGATAATTATTATCGCGCTCCGGATCTACCTAAGC CGAGAGAACAAGCGTCGCGACAAGCTCGCGGAGTTTAATCAGGTCGCTAGCAATGGGGTTGTCGAGACGGTTGAT TCGGATGGGGGTAAAGTCGCTCGCGTAGTGGATAATAGTCAGTTGGATTTGACTGACAGGGAGAATTTGACTTTC CGATATGTACTCTGA |
| Transcript | >Pro_DTO377G3_2|g9192.t1 ATGGCAGTAGAAGACCATAAACCTGGCTTTGTGGCAGAAGCACAAGTCCATGAAGAAAGTGAAAATGATTTCATC AACACGCCAAAGCTCCCTGATCAATTTGCCGATGAGAGTTTTAAGCTATTCTCGAAAATCCAAGTCACAGACCCG ACTCCCGAAGAAGCAATACAGATTCGCAACAAATGCTTATGGCGGGTTTTACCCTTTCTTTGCATTGGATATCAC TTGATGTATGTCGATAAGCAAACGCAGCTTGGAAGTTCTGCGATCCTAGGGATCATGCAAGATGCGCATCTAAAC TCGAATCAATATAACTGGCTCTCTTCAATTTTCTATTTTGGGTATCTTTTGGCTGAATGGCCGCAGAATTGGGCC TTGCAGCGGTTTCCTGTTGGGAAGTGGCTGGCTGGCAATTTGATAATATGGGGTGGAATCACTCTCTTGCATATC CCTTGCAACAGCTTTGCATCTCTTTTTGTTGTTCGCTTTTTCCTTGGGGTAGCAGAAGCATGCATCGTTCCAGCA TTCCTGCTTTCAATGTCCATGTTCTTTACTTATGGCGAGCAGGCCGTCATGATGCCGGTTATGTGGTCAATTGGT AATGCAAGTCCTATCACGTCAGGCTTGTTATCTTATGGTGTTCTTTGGATTGATACGGGCAGCTTTTCTCCGTGG AAATGGTTCATGGTGATTACGGGTATTCTCACAGTCATTTTCGGTGTCTTTGTCTATTTCTTCTTTCCCGACAGT CCTATCCATGCCAATTTCTTAACACACGAGGAACGTGCGAAGGCTATTCTACGGATCAAAGAGAACCACTCCGGA ATCGAGCAAAAGGTTTTCAAAAGATATCAGTTTATTGAAGCAATTCAAGACCCCAAAACCTGGCTCTTCTTCCTA CACGCCTGGTCCCAGGAAATGGCAAATGGAGTCACGAATCAATATTCACTAATCATCAAGTCATTTGGTTTCACC GTTCTTCAAACAACACTATTAGGAACCGTCACGGGTGTGGTGTCGTTCTTTTCTCTCATATCAGCTGCAATCACT TTGTATCACACCAAGAATTGCCGAGCATGGATATCGCTCATTGCATACATTCCAGGTGCTCTTTCAAGTATCCTT CTGCTAGCCTTGCCCTGGTCCAATCGATGGGGTCTTATCGTCGGAATCTGGATTAGATCTACAACCGGCATCCCA TATGCTGTTGTGATGATCTGGGCTGCCAATGCGTCCGCGGGTCATACGAAGAAAACTACCGTCATTGCGCTTTAT CATATTGGATACGGACTGGGAAATATCATCTCTCCGCAATTATTCCGGCCGGAAATGAAGCCTCGGTACAGACCA ACTTGGATTATTTTGCTTGTGGTTGCTGCGATTCTTCCTTCGATAATTATTATCGCGCTCCGGATCTACCTAAGC CGAGAGAACAAGCGTCGCGACAAGCTCGCGGAGTTTAATCAGGTCGCTAGCAATGGGGTTGTCGAGACGGTTGAT TCGGATGGGGGTAAAGTCGCTCGCGTAGTGGATAATAGTCAGTTGGATTTGACTGACAGGGAGAATTTGACTTTC CGATATGTACTCTGA |
| Gene | >Pro_DTO377G3_2|g9192.t1 ATGGCAGTAGAAGACCATAAACCTGGCTTTGTGGCAGAAGCACAAGTCCATGAAGAAAGTGAAAATGATTTCATC AACACGCCAAAGCTCCCTGATCAATTTGCCGATGAGAGTTTTAAGCTATTCTCGAAAATCCAAGTCACAGACCCG ACTCCCGAAGAAGCAATACAGATTCGCAACAAATGCTTATGGCGGGTTTTACCCTTTCTTTGCATTGGATATCAC TTGATGTATGTCGATAAGCAAACGGTATGTTAATTTGATCCCCGAATAGGAGAATCCAGTAATAACATGCTAGCA GCTTGGAAGTTCTGCGATCCTAGGGATCATGCAAGATGCGCATCTAAACTCGAATCAATATAACTGGCTCTCTTC AATTTTCTATTTTGGGTATCTTTTGGCTGAATGGCCGCAGAATTGGGCCTTGCAGCGGTTTCCTGTTGGGAAGTG GCTGGCTGGCAATTTGATAATATGGTAAGTTCTTCTCTTGTCCTCAAACAATGGTATATCGGTCACTGACTGGCT CTATAGGGGTGGAATCACTCTCTTGCATATCCCTTGCAACAGCTTTGCATCTCTTTTTGTTGTTCGCTTTTTCCT TGGGGTAGCAGAAGCATGCATCGTTCCAGCATTCCTGCTTTCAATGTCCATGTTCTTTACTTATGGCGAGCAGGC CGTCATGATGCCGGTTATGTGGTCAATTGGTAATGCAAGTCCTATCACGTCAGGCTTGTTATCTTATGGTGTTCT TTGGATTGATACGGGCAGCTTTTCTCCGTGGAAATGGTTCATGGGTATGGTTGTTCCCCGAGTATATCCGTCAGA TTGCTAACCTCTATTCTAGTGATTACGGGTATTCTCACAGTCATTTTCGGTGTCTTTGTCTATTTCTTCTTTCCC GACAGTCCTATCCATGCCAATTTCTTAACACACGAGGAACGTGCGAAGGCTATTCTACGGATCAAAGAGAACCAC TCCGGAATCGAGCAAAAGGTTTTCAAAAGATATCAGTCAGACCCCATACCTAAGAAATCTTGATATTCAATATCT AACTAAAGCTCTAGGTTTATTGAAGCAATTCAAGACCCCAAAACCTGGCTCTTCTTCCTACACGCCTGGTCCCAG GAAATGGCAAATGGAGTCACGAATCAATATTCACTAATCATCAAGTCATTTGGTTTCACCGTTCTTCAAACAACA CTATTAGGAACCGTCACGGGTGTGGTGTCGTTCTTTTCTCTCATATCAGCTGCAATCACTTTGTATCACACCAAG GTAAGCCAGACTCGGTCATCTAATGCGAACGTGGACTGAAACTTGCAGAATTGCCGAGCATGGATATCGCTCATT GCATACATTCCAGGTGCTCTTTCAAGTATCCTTCTGCTAGGTTAGTAGGTCTCTTCTTTTCAAAATGTGGTCCAC TACTAATTGGTCCGACAGCCTTGCCCTGGTCCAATCGATGGGGTCTTATCGTCGGAATCTGGATTAGATCTACAA CCGGCATCCCATATGCTGTTGTGATGATCTGGGCTGCCAATGCGTCCGCGGGTCATACGAAGAAAACTACCGTCA TTGCGCTTTATCATATTGGATACGGACTGGGAAATATCATCTCTCCGCAATTATTCCGGCCGGAAATGAAGGTGA GTTCTTCATTCGAGCTGGCTTGGACTGTCATACTAACAACCATTCAAGCCTCGGTACAGACCAACTTGGATTATT TTGCTTGTGGTAAGTCGTGTTTGGACAAAGCTATGTGCGGAATATTTGACTGATAGCTCTCCAGGTTGCTGCGAT TCTTCCTTCGATAATTATTATCGCGCTCCGGATCTACCTAAGCCGAGAGAACAAGCGTCGCGACAAGCTCGCGGA GTTTAATCAGGTCGCTAGCAATGGGGTTGTCGAGACGGTTGATTCGGATGGGGGTAAAGTCGCTCGCGTAGTGGA TAATAGTCAGTTGGATTTGACTGACAGGGAGAATTTGACTTTGTGAGTTCTCATCTACACGTTTGTTGGTCTGCT GATACTAATTCAGAAACAGCCGATATGTACTCTGA |