© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g919.t1 |
| Gene name | |
| Location | scaffold_01:2434727..2437503 |
| Strand | - |
| Gene length (bp) | 2776 |
| Transcript length (bp) | 2280 |
| Coding sequence length (bp) | 2280 |
| Protein length (aa) | 760 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03169 | OPT | OPT oligopeptide transporter protein | 9.0E-157 | 56 | 719 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035673 | oligopeptide transmembrane transporter activity | Yes |
| GO:1904680 | peptide transmembrane transporter activity | No |
| GO:0042887 | amide transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 55 | 77 | 22 |
| 2 | 163 | 185 | 22 |
| 3 | 195 | 214 | 19 |
| 4 | 230 | 247 | 17 |
| 5 | 304 | 326 | 22 |
| 6 | 380 | 402 | 22 |
| 7 | 440 | 462 | 22 |
| 8 | 469 | 491 | 22 |
| 9 | 552 | 574 | 22 |
| 10 | 618 | 640 | 22 |
| 11 | 664 | 686 | 22 |
| 12 | 699 | 721 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.92 | 0.93 | 4.92 |
| 5d_25C | Five days - 25 degrees Celsius | 2.19 | 0.61 | 3.77 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.75 | 0.41 | 3.09 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.98 | 0.13 | 1.83 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.55 | 0.33 | 2.78 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.90 | 1.29 | 6.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.540693 | no |
| 3d_25C | 7d_25C | 0.233034 | no |
| 3d_25C | 7d_15C | 0.132161 | no |
| 3d_25C | 7d_30C | 0.523470 | no |
| 3d_25C | 10d_25C | 0.012303 | yes |
| 5d_25C | 7d_25C | 0.682322 | no |
| 5d_25C | 7d_15C | 0.499385 | no |
| 5d_25C | 7d_30C | 0.148176 | no |
| 5d_25C | 10d_25C | 0.075175 | no |
| 7d_25C | 7d_15C | 0.856719 | no |
| 7d_25C | 7d_30C | 0.049750 | yes |
| 7d_25C | 10d_25C | 0.240275 | no |
| 7d_15C | 7d_30C | 0.025128 | yes |
| 7d_15C | 10d_25C | 0.380932 | no |
| 7d_30C | 10d_25C | 0.001804 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g919.t1 MEANKDTDINLLERNIREKEEVQDENNTDSDIDSQTEILRAAGIGIAKDDPTEPVLTLRMWVIGIAFCVIVSGLN TLYTLRAPSLTISGSVVLLLAYPLGKLWEKIVPNWTVPLGRLAFELNPGPFNTKEHVLIFIMSNLSIYVRLGADV LTEQQMFYGYKAGWGFQILITFSTFLIGFCLAGLFRAIVVVPQELIWPGVLGVTALTTTLHHVNQQKVQVTYNTW KMSRYAFFGMAFSISFCWYWFPDFIFPALSYFSFPCWIKPESKVVNQIFGMNSGMGLLPLTFDWSQISYVGSPLL IPSWAVFNVFVSLVFWIWIVAVALYYSNVWNTGYLPFQSSQVFDNTGNIYKVKKIVNAASGYKLDVKKYLAYSPV YMPVTYALNMFGLSFATLSALLVWVVLEKRHVMADAAKRVPRLVLESFPGRSREYSEDERGDPDVPLWWYLVACV LALFMSMFAVEWWNVELRWYGVLLACTVALIFYPALALVYATSNLKINIDIFCRIVAGFVFEGKVLANIWFFDIG YITTIKGLYFAQDMKLAYYCHIPQRKLFLVQCVGMVIGTLSSLGVLNWALNHITGVCTSAAVNGFTCPYSRTHFN TSLIWGAVGPRRYFSNQIGYSALLYFFIVGAILPIPVYYMTRRYPKSLWRRVHIPLFLGGLNYLPPATGMNYGSW AVVGLTFGWLIRKRLHSWWSKYNFVLSSAMDSSVGIAGVLIFLTIFFTGASNHFKWWGTEVYKNTCDWKGCPDLS VPKGHKFGV* |
| Coding | >Pro_DTO377G3_2|g919.t1 ATGGAAGCCAACAAGGACACAGATATTAACCTGCTGGAGAGAAACATTCGGGAAAAGGAAGAAGTTCAGGATGAA AATAATACCGATTCCGACATAGATTCACAGACCGAAATCTTGCGGGCTGCTGGTATAGGTATAGCTAAAGATGAT CCTACTGAGCCCGTCCTCACTCTACGTATGTGGGTGATAGGAATTGCCTTTTGTGTCATCGTTAGCGGGTTGAAC ACACTCTACACGCTCCGTGCACCTTCCTTGACAATTTCCGGCTCGGTTGTCCTCTTGTTGGCTTATCCCCTGGGA AAGCTTTGGGAGAAAATCGTCCCGAACTGGACCGTTCCTCTAGGACGACTGGCATTTGAGCTCAACCCGGGTCCT TTTAATACAAAGGAACATGTCTTGATCTTTATTATGTCCAACCTCAGTATCTACGTTCGTCTTGGCGCCGATGTC CTGACAGAGCAGCAAATGTTCTACGGTTACAAAGCAGGATGGGGATTCCAAATTCTCATTACTTTCTCCACATTC CTCATCGGGTTCTGTCTTGCTGGTCTATTCCGGGCGATTGTGGTCGTTCCCCAAGAGCTGATCTGGCCTGGGGTG CTGGGTGTTACTGCGTTGACCACAACGCTGCATCATGTCAACCAGCAAAAAGTGCAAGTGACTTACAATACTTGG AAAATGTCCCGCTATGCCTTCTTCGGTATGGCATTTTCCATCTCGTTCTGCTGGTATTGGTTCCCAGACTTCATC TTCCCGGCGCTTAGCTATTTCAGCTTCCCGTGTTGGATCAAGCCTGAGAGCAAAGTAGTCAATCAGATCTTCGGA ATGAATTCTGGAATGGGGCTGTTGCCGCTTACATTTGATTGGAGCCAAATATCTTACGTCGGATCACCCTTGCTC ATCCCATCGTGGGCAGTTTTCAACGTCTTCGTTTCCCTGGTGTTCTGGATTTGGATTGTGGCTGTTGCTCTATAC TATTCCAATGTGTGGAACACAGGCTACCTGCCTTTCCAAAGCTCTCAAGTATTCGACAATACCGGGAATATTTAT AAAGTCAAAAAGATTGTCAATGCAGCCTCAGGCTACAAGCTCGATGTTAAGAAGTACCTTGCTTATTCCCCGGTC TATATGCCAGTGACCTACGCGTTGAACATGTTTGGGCTCTCATTTGCGACCCTGAGCGCTCTTCTTGTTTGGGTT GTCCTTGAAAAGCGTCATGTCATGGCCGATGCTGCCAAAAGGGTGCCTCGGCTAGTCCTGGAGTCTTTTCCCGGT CGCTCTAGAGAGTACAGCGAGGACGAGCGGGGAGACCCAGATGTGCCTTTGTGGTGGTACCTGGTTGCATGCGTC TTAGCCTTATTCATGTCGATGTTCGCCGTTGAGTGGTGGAACGTTGAACTGAGATGGTACGGTGTTCTGCTGGCG TGTACTGTGGCACTGATATTTTATCCTGCGTTGGCCCTGGTCTATGCCACTTCTAACCTCAAGATCAATATCGAC ATCTTCTGCCGTATCGTGGCCGGTTTCGTCTTTGAGGGCAAAGTCCTGGCCAATATCTGGTTCTTTGACATCGGA TACATCACAACCATCAAGGGTCTTTACTTTGCCCAGGATATGAAACTCGCTTACTATTGCCATATCCCGCAACGA AAACTGTTCTTGGTTCAATGCGTGGGAATGGTTATCGGCACGCTCTCCTCGCTCGGTGTCCTCAATTGGGCCCTG AATCATATCACCGGCGTCTGCACTAGCGCTGCTGTTAACGGTTTCACTTGTCCTTACAGCAGAACCCACTTCAAT ACTTCCTTGATCTGGGGTGCAGTGGGTCCTCGTCGTTACTTCTCAAACCAAATTGGCTATTCCGCTTTGCTTTAT TTCTTCATCGTCGGTGCCATTCTACCCATTCCCGTCTATTATATGACCCGCCGATACCCCAAGTCACTGTGGAGA AGGGTTCATATTCCCCTGTTCCTCGGTGGGCTCAATTACTTGCCCCCTGCGACCGGAATGAATTACGGAAGCTGG GCAGTTGTTGGACTCACCTTTGGCTGGCTCATTCGGAAGCGTCTGCATAGCTGGTGGAGTAAGTATAACTTTGTG CTGAGTTCTGCCATGGACTCGTCAGTGGGAATTGCTGGTGTCTTGATTTTCTTGACAATTTTCTTTACTGGAGCC AGCAACCATTTCAAATGGTGGGGAACAGAGGTTTACAAGAACACCTGCGACTGGAAAGGTTGTCCCGATCTTTCT GTACCAAAGGGCCATAAGTTCGGCGTGTAG |
| Transcript | >Pro_DTO377G3_2|g919.t1 ATGGAAGCCAACAAGGACACAGATATTAACCTGCTGGAGAGAAACATTCGGGAAAAGGAAGAAGTTCAGGATGAA AATAATACCGATTCCGACATAGATTCACAGACCGAAATCTTGCGGGCTGCTGGTATAGGTATAGCTAAAGATGAT CCTACTGAGCCCGTCCTCACTCTACGTATGTGGGTGATAGGAATTGCCTTTTGTGTCATCGTTAGCGGGTTGAAC ACACTCTACACGCTCCGTGCACCTTCCTTGACAATTTCCGGCTCGGTTGTCCTCTTGTTGGCTTATCCCCTGGGA AAGCTTTGGGAGAAAATCGTCCCGAACTGGACCGTTCCTCTAGGACGACTGGCATTTGAGCTCAACCCGGGTCCT TTTAATACAAAGGAACATGTCTTGATCTTTATTATGTCCAACCTCAGTATCTACGTTCGTCTTGGCGCCGATGTC CTGACAGAGCAGCAAATGTTCTACGGTTACAAAGCAGGATGGGGATTCCAAATTCTCATTACTTTCTCCACATTC CTCATCGGGTTCTGTCTTGCTGGTCTATTCCGGGCGATTGTGGTCGTTCCCCAAGAGCTGATCTGGCCTGGGGTG CTGGGTGTTACTGCGTTGACCACAACGCTGCATCATGTCAACCAGCAAAAAGTGCAAGTGACTTACAATACTTGG AAAATGTCCCGCTATGCCTTCTTCGGTATGGCATTTTCCATCTCGTTCTGCTGGTATTGGTTCCCAGACTTCATC TTCCCGGCGCTTAGCTATTTCAGCTTCCCGTGTTGGATCAAGCCTGAGAGCAAAGTAGTCAATCAGATCTTCGGA ATGAATTCTGGAATGGGGCTGTTGCCGCTTACATTTGATTGGAGCCAAATATCTTACGTCGGATCACCCTTGCTC ATCCCATCGTGGGCAGTTTTCAACGTCTTCGTTTCCCTGGTGTTCTGGATTTGGATTGTGGCTGTTGCTCTATAC TATTCCAATGTGTGGAACACAGGCTACCTGCCTTTCCAAAGCTCTCAAGTATTCGACAATACCGGGAATATTTAT AAAGTCAAAAAGATTGTCAATGCAGCCTCAGGCTACAAGCTCGATGTTAAGAAGTACCTTGCTTATTCCCCGGTC TATATGCCAGTGACCTACGCGTTGAACATGTTTGGGCTCTCATTTGCGACCCTGAGCGCTCTTCTTGTTTGGGTT GTCCTTGAAAAGCGTCATGTCATGGCCGATGCTGCCAAAAGGGTGCCTCGGCTAGTCCTGGAGTCTTTTCCCGGT CGCTCTAGAGAGTACAGCGAGGACGAGCGGGGAGACCCAGATGTGCCTTTGTGGTGGTACCTGGTTGCATGCGTC TTAGCCTTATTCATGTCGATGTTCGCCGTTGAGTGGTGGAACGTTGAACTGAGATGGTACGGTGTTCTGCTGGCG TGTACTGTGGCACTGATATTTTATCCTGCGTTGGCCCTGGTCTATGCCACTTCTAACCTCAAGATCAATATCGAC ATCTTCTGCCGTATCGTGGCCGGTTTCGTCTTTGAGGGCAAAGTCCTGGCCAATATCTGGTTCTTTGACATCGGA TACATCACAACCATCAAGGGTCTTTACTTTGCCCAGGATATGAAACTCGCTTACTATTGCCATATCCCGCAACGA AAACTGTTCTTGGTTCAATGCGTGGGAATGGTTATCGGCACGCTCTCCTCGCTCGGTGTCCTCAATTGGGCCCTG AATCATATCACCGGCGTCTGCACTAGCGCTGCTGTTAACGGTTTCACTTGTCCTTACAGCAGAACCCACTTCAAT ACTTCCTTGATCTGGGGTGCAGTGGGTCCTCGTCGTTACTTCTCAAACCAAATTGGCTATTCCGCTTTGCTTTAT TTCTTCATCGTCGGTGCCATTCTACCCATTCCCGTCTATTATATGACCCGCCGATACCCCAAGTCACTGTGGAGA AGGGTTCATATTCCCCTGTTCCTCGGTGGGCTCAATTACTTGCCCCCTGCGACCGGAATGAATTACGGAAGCTGG GCAGTTGTTGGACTCACCTTTGGCTGGCTCATTCGGAAGCGTCTGCATAGCTGGTGGAGTAAGTATAACTTTGTG CTGAGTTCTGCCATGGACTCGTCAGTGGGAATTGCTGGTGTCTTGATTTTCTTGACAATTTTCTTTACTGGAGCC AGCAACCATTTCAAATGGTGGGGAACAGAGGTTTACAAGAACACCTGCGACTGGAAAGGTTGTCCCGATCTTTCT GTACCAAAGGGCCATAAGTTCGGCGTGTAG |
| Gene | >Pro_DTO377G3_2|g919.t1 ATGGAAGCCAACAAGGACACAGATATTAACCTGCTGGAGAGAAACATTCGGGAAAAGGAAGAAGTTCAGGATGAA AATAATACCGATTCCGGTAAGTCTGCTGCTGCCTGTTGCTGTGGCTTGGGGTTTTTTTCCTTCTTTTTTTGCGAG ATTCTCACACCACTGCAGACATAGATTCACAGACCGAAATCTTGCGGGCTGCTGGTATAGGTATAGCTAAAGATG ATCCTACTGAGCCCGTCCTCACTCTACGTATGTGGGTGATAGGAATTGCCTTTTGTGTCATCGTTAGCGGGTTGA ACACACTCTACACGCTCCGTGCACCTTCCTTGACAATTTCCGGCTCGGTTGTCCTCTTGTTGGCTTATCCCCTGG GAAAGCTTTGGGAGAAAATCGTCCCGAACTGGACCGTTCCTCTAGGACGACTGGCATTTGAGCTCAACCCGGGTC CTTTTAATACAAAGGTATGTTCCCTGGCAACGTCACAGTAATCAGTTTAACAAAGGTTATTCTAGGAACATGTCT TGATCTTTATTATGTCCAACCTCAGTATCTACGTTCGTCTTGGCGCCGATGTCCTGACAGAGCAGCAAATGTTCT ACGGTTACAAAGCAGGATGGGGATTCCAAATTCTCATTACTTTCTCCACATTCCTCATCGGGTTCTGTCTTGCTG GTCTATTCCGGGCGATTGTGGTCGTTCCCCAAGAGCTGATCTGGCCTGGGGTGCTGGGTGTTACTGCGTTGACCA CAACGCTGCATCATGTCAACCAGCAAAAAGTGCAAGTGACGTAAGTTCCCTGTATTTATTTGTTGTCTCGGTGAA TGGAACTGATAGATGGTAGTTACAATACTTGGAAAATGTCCCGCTATGCCTTCTTCGGTATGGCATTTTCCATCT CGTTCTGCTGGTATTGGTTCCCAGACTTCATCTTCCCGGCGCTTAGCTATTTCAGCTTCCCGTGTTGGATCAAGC CTGAGAGCAAAGTAGTCAATCAGATCTTCGGAATGAATTCTGGAATGGGGCTGTTGCCGCTTACATTTGATTGTG AGTATCACAACCTTTCAGGTCAATTACCGTGCTGACCCCAATAGGGAGCCAAATATCTTACGTCGGATCACCCTT GCTCATCCCATCGTGGGCAGTTTTCAACGTCTTCGTTTCCCTGGTGTTCTGGATTTGGATTGTGGCTGTTGCTCT ATACTATTCCAATGTGTGGAACACAGGCTACCTGCCTTTCCAAAGCTCTCAAGGTACAACCCATCCTTTCAAGCT CCCGACCAAATCTAACTTGTGCAAACAGTATTCGACAATACCGGGAATATTTATAAAGTCAAAAAGATTGTCAAT GCAGCCTCAGGCTACAAGCTCGATGTTAAGAAGTACCTTGCTTATTCCCCGGTATGTTTACACGTTCTATAAACT CAAAAAACTTGACATTCTGCTAACTTGTGGAACGTTTAGGTCTATATGCCAGTGACCTACGCGTTGAACATGTTT GGGCTCTCATTTGCGACCCTGAGCGCTCTTCTTGTTTGGGTTGTCCTTGAAAAGCGTCATGTCATGGCCGATGCT GCCAAAAGGGTGCCTCGGCTAGTCCTGGAGTCTTTTCCCGGTCGCTCTAGAGAGTACAGCGAGGACGAGCGGGGA GACCCAGATGTGCCTTTGTGGTGGTACCTGGTTGCATGCGTCTTAGCCTTATTCATGTCGATGTTCGCCGTTGAG TGGTGGAACGTTGAACTGAGATGGTACGGTGTTCTGCTGGCGTGTACTGTGGCACTGATATTTTATCCTGCGGTG AGTCTACCTGAAGTTCCGATTTACACATTGGACACCTCTCTGACCAATCTTAGTTGGCCCTGGTCTATGCCACTT CTAACCTCAAGATCAATATCGACATCTTCTGCCGTATCGTGGCCGGTTTCGTCTTTGAGGGCAAAGTCCTGGCCA ATATCTGGTTCTTTGACATCGGATACATCACAACCATCAAGGGTCTTTACTTTGCCCAGGATATGAAACTCGCTT ACTATTGCCATGCAAGCCCTTTCCTTCCTACTATAGTTGAATCATGCTAATACCCGGAAGATCCCGCAACGAAAA CTGTTCTTGGTTCAATGCGTGGGAATGGTTATCGGCACGCTCTCCTCGCTCGGTGTCCTCAATTGGGCCCTGAAT CATATCACCGGCGTCTGCACTAGCGCTGCTGTTAACGGTTTCACTTGTCCTTACAGCAGAACCCACTTCAATACT TCCTTGATCTGGGGTGCAGTGGGTCCTCGTCGTTACTTCTCAAACCAAATTGGCTATTCCGCTTTGCTTTATTTC TTCATCGTCGGTGCCATTCTACCCATTCCCGTCTATTATATGACCCGCCGATACCCCAAGTCACTGTGGAGAAGG GTTCATATTCCCCTGTTCCTCGGTGGGCTCAATTACTTGCCCCCTGCGACCGGAATGAATTACGGAAGCTGGGCA GTTGTTGGACTCACCTTTGGCTGGCTCATTCGGAAGCGTCTGCATAGCTGGTGGAGTAAGTATAACTTTGTGCTG AGTTCTGCCATGGACTCGTCAGTGGGAATTGCTGGTGTCTTGATTTTCTTGACAATTTTCTTTACTGGAGCCAGC AACCATTTCAAATGGTGGGGAACAGAGGTTTACAAGGTGTGTTTACCCCCTCTGACGTTCAATTACTTATACTAA CTATTAGCAGAACACCTGCGACTGGAAAGGTTGTCCCGATCTTTCTGTACCAAAGGGCCATAAGTTCGGCGTGTA G |