© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9188.t1 |
| Gene name | |
| Location | scaffold_43:49198..49781 |
| Strand | + |
| Gene length (bp) | 583 |
| Transcript length (bp) | 477 |
| Coding sequence length (bp) | 477 |
| Protein length (aa) | 159 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00293 | NUDIX | NUDIX domain | 8.4E-18 | 24 | 142 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 129.99 | 71.55 | 188.43 |
| 5d_25C | Five days - 25 degrees Celsius | 132.45 | 73.12 | 191.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 125.74 | 68.47 | 183.01 |
| 10d_25C | Ten days - 25 degrees Celsius | 116.78 | 62.88 | 170.69 |
| 7d_15C | Seven days - 15 degrees Celsius | 157.68 | 89.61 | 225.75 |
| 7d_30C | Seven days - 30 degrees Celsius | 125.49 | 68.04 | 182.94 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.963619 | no |
| 3d_25C | 7d_25C | 0.933801 | no |
| 3d_25C | 7d_15C | 0.501654 | no |
| 3d_25C | 7d_30C | 0.927697 | no |
| 3d_25C | 10d_25C | 0.754803 | no |
| 5d_25C | 7d_25C | 0.890576 | no |
| 5d_25C | 7d_15C | 0.552537 | no |
| 5d_25C | 7d_30C | 0.883314 | no |
| 5d_25C | 10d_25C | 0.705470 | no |
| 7d_25C | 7d_15C | 0.411044 | no |
| 7d_25C | 7d_30C | 0.996331 | no |
| 7d_25C | 10d_25C | 0.837375 | no |
| 7d_15C | 7d_30C | 0.403010 | no |
| 7d_15C | 10d_25C | 0.252055 | no |
| 7d_30C | 10d_25C | 0.844052 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9188.t1 MAQIRSMEARVGRKNQRYGSKGERLVAGVVPISADKTKVLMIQSAGPGGWVLPKGGWELDEKTAEQAACREAWEE AGVICVVTRDLGLIPDMRPSGLLTAHAPKASYQFFEVTVQQEETEWPEMHKRKRQWVSYTQAATALANRPELLEA LHRSSLKR* |
| Coding | >Pro_DTO377G3_2|g9188.t1 ATGGCTCAAATACGGTCTATGGAAGCCCGCGTTGGGCGGAAAAACCAACGCTACGGCTCAAAAGGCGAGCGACTG GTAGCCGGCGTTGTCCCTATTTCCGCCGACAAGACCAAAGTCCTCATGATTCAATCCGCAGGACCCGGAGGCTGG GTGCTCCCCAAGGGCGGTTGGGAGCTCGATGAGAAAACTGCCGAGCAGGCTGCATGCCGTGAGGCCTGGGAGGAA GCGGGTGTCATCTGTGTCGTGACCAGAGATCTGGGACTCATTCCGGACATGAGACCCTCCGGCCTTCTCACGGCG CACGCGCCCAAAGCCTCATATCAGTTCTTCGAAGTCACCGTCCAGCAGGAGGAAACCGAATGGCCCGAGATGCAC AAGCGGAAACGGCAGTGGGTTTCGTATACACAGGCTGCCACTGCCCTTGCAAATCGGCCCGAGTTGCTTGAAGCC TTGCATCGCAGCTCTTTAAAGCGGTAG |
| Transcript | >Pro_DTO377G3_2|g9188.t1 ATGGCTCAAATACGGTCTATGGAAGCCCGCGTTGGGCGGAAAAACCAACGCTACGGCTCAAAAGGCGAGCGACTG GTAGCCGGCGTTGTCCCTATTTCCGCCGACAAGACCAAAGTCCTCATGATTCAATCCGCAGGACCCGGAGGCTGG GTGCTCCCCAAGGGCGGTTGGGAGCTCGATGAGAAAACTGCCGAGCAGGCTGCATGCCGTGAGGCCTGGGAGGAA GCGGGTGTCATCTGTGTCGTGACCAGAGATCTGGGACTCATTCCGGACATGAGACCCTCCGGCCTTCTCACGGCG CACGCGCCCAAAGCCTCATATCAGTTCTTCGAAGTCACCGTCCAGCAGGAGGAAACCGAATGGCCCGAGATGCAC AAGCGGAAACGGCAGTGGGTTTCGTATACACAGGCTGCCACTGCCCTTGCAAATCGGCCCGAGTTGCTTGAAGCC TTGCATCGCAGCTCTTTAAAGCGGTAG |
| Gene | >Pro_DTO377G3_2|g9188.t1 ATGGCTCAAATACGGTCTATGGAAGCCCGCGTTGGGCGGAAAAACCAACGTGAGTTATCGCTGGTGTCGCTTTGC GGCTGCGCACGTGGGGGGGCACCCGTACCCCTTACGTCTACACTGTCCCCGTGTTTCCTGACTCTAACGGCTTGG CATAGGCTACGGCTCAAAAGGCGAGCGACTGGTAGCCGGCGTTGTCCCTATTTCCGCCGACAAGACCAAAGTCCT CATGATTCAATCCGCAGGACCCGGAGGCTGGGTGCTCCCCAAGGGCGGTTGGGAGCTCGATGAGAAAACTGCCGA GCAGGCTGCATGCCGTGAGGCCTGGGAGGAAGCGGGTGTCATCTGTGTCGTGACCAGAGATCTGGGACTCATTCC GGACATGAGACCCTCCGGCCTTCTCACGGCGCACGCGCCCAAAGCCTCATATCAGTTCTTCGAAGTCACCGTCCA GCAGGAGGAAACCGAATGGCCCGAGATGCACAAGCGGAAACGGCAGTGGGTTTCGTATACACAGGCTGCCACTGC CCTTGCAAATCGGCCCGAGTTGCTTGAAGCCTTGCATCGCAGCTCTTTAAAGCGGTAG |