© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g9164.t1 |
| Gene name | |
| Location | scaffold_42:141520..143692 |
| Strand | + |
| Gene length (bp) | 2172 |
| Transcript length (bp) | 2043 |
| Coding sequence length (bp) | 2043 |
| Protein length (aa) | 681 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00723 | Glyco_hydro_15 | Glycosyl hydrolases family 15 | 1.4E-50 | 279 | 669 |
| PF19291 | TREH_N | Trehalase-like, N-terminal | 8.7E-14 | 8 | 115 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 28.61 | 16.85 | 40.38 |
| 5d_25C | Five days - 25 degrees Celsius | 21.85 | 12.34 | 31.37 |
| 7d_25C | Seven days - 25 degrees Celsius | 20.03 | 11.06 | 29.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 14.94 | 7.80 | 22.09 |
| 7d_15C | Seven days - 15 degrees Celsius | 27.25 | 15.88 | 38.62 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.10 | 11.16 | 29.05 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.284231 | no |
| 3d_25C | 7d_25C | 0.143544 | no |
| 3d_25C | 7d_15C | 0.890180 | no |
| 3d_25C | 7d_30C | 0.145347 | no |
| 3d_25C | 10d_25C | 0.004450 | yes |
| 5d_25C | 7d_25C | 0.801189 | no |
| 5d_25C | 7d_15C | 0.417245 | no |
| 5d_25C | 7d_30C | 0.811337 | no |
| 5d_25C | 10d_25C | 0.134928 | no |
| 7d_25C | 7d_15C | 0.228378 | no |
| 7d_25C | 7d_30C | 0.992059 | no |
| 7d_25C | 10d_25C | 0.294147 | no |
| 7d_15C | 7d_30C | 0.231930 | no |
| 7d_15C | 10d_25C | 0.009770 | yes |
| 7d_30C | 10d_25C | 0.281398 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9164.t1 MTEPAYNAIEDYGLVGDMHTCALVSKAGSLDYMCWPVFDSPTVFCRLLDNQKGGFFAVKPYKTVVDAHSKQRYLP YSNLLETRWTDEDGVATLLDYFPVTPKKTAQSSRLLSGYCPCNEPGTNRFKSGLQHSGLIRKLECSRGSMELKVE LFPAFNYARDSHNTRAKLEDDLDKHRLQTVHFESETERLQLEIFADSREPDKLGFPSASLKLEEREGLRGRGLVA WIRLSAGQTLHLVLHSPEKAVPSSATMAAYLARMEEETSDYWTDWTRKCAFRGHYRETVERSLLILKLLTYKPTG AIVAAPTFSLPENVGGSRNWDYRYSWVRDTAFTLYVFLKMGYSEEAEAYVNFIFERVFPHACQDQEPNSKRPFLP LMFTIRGEYDIPEMELDHLDGYKGSKPVRIGNAAVFHTQLDIYGELLDSIYLCNKHGNPITYDQWNAIRRMINYV IGVRNQKDMSIWESRGQIQNFIYSKIMMWVALDRGIRLAEKRASLPCPDRFEWIRVRDEMYDEIMTKGYNEERGH FCQSYESREVLDASILIAPLVFFVAPNDPRFISTLKKILQSPEKEGLSSAKMVFRYDHKKANDGMTGGEGAFIMV TFWLVEAMARAAKYDVAIPNIWKLALAHFDNILSYANHLGMFSEEVAISGEQMGNSPQAFSHLACISAAINLGRS GRIGE* |
| Coding | >Pro_DTO377G3_2|g9164.t1 ATGACTGAACCTGCGTACAATGCCATTGAGGACTATGGCCTGGTCGGGGACATGCACACCTGTGCCCTGGTCAGC AAGGCCGGTAGTTTGGATTACATGTGCTGGCCAGTCTTTGACTCTCCTACCGTTTTCTGTCGTCTGCTGGACAAC CAGAAAGGAGGCTTCTTCGCCGTGAAGCCCTACAAGACGGTAGTAGATGCTCACAGCAAGCAGCGGTATCTTCCA TACTCGAACCTGCTTGAAACCAGGTGGACTGATGAGGATGGCGTCGCGACGCTGCTGGACTACTTTCCTGTCACA CCTAAAAAGACGGCGCAGTCGTCCCGGTTGTTGTCAGGATACTGTCCTTGCAATGAACCGGGAACCAATCGCTTC AAGTCAGGACTGCAGCACTCGGGCCTGATCAGAAAGCTGGAGTGTAGCCGTGGCTCAATGGAATTGAAAGTGGAG TTATTCCCTGCTTTTAATTATGCACGAGACTCGCACAATACCCGTGCAAAGCTAGAAGACGACTTGGACAAGCAC CGGCTGCAGACTGTCCACTTCGAGAGTGAGACAGAGCGGCTGCAACTCGAGATCTTTGCCGATTCACGGGAGCCA GATAAGCTTGGTTTCCCCTCGGCGTCTTTGAAACTGGAAGAACGAGAGGGCCTCCGTGGCCGCGGATTGGTGGCC TGGATCCGTTTGTCGGCGGGCCAGACCCTTCATCTGGTGTTGCATAGTCCCGAGAAGGCTGTCCCCAGCTCGGCC ACCATGGCAGCCTACCTCGCGCGAATGGAGGAGGAAACTTCCGACTATTGGACCGATTGGACACGCAAGTGTGCC TTCCGTGGTCATTACCGAGAGACAGTCGAGCGCAGTCTCCTAATTCTGAAGCTGTTGACCTACAAACCCACGGGT GCAATTGTCGCTGCGCCCACGTTCTCGCTTCCCGAAAATGTTGGAGGCTCCAGAAACTGGGATTATCGATATTCC TGGGTCCGTGACACAGCCTTCACGCTATATGTCTTTCTCAAAATGGGCTACAGCGAAGAAGCGGAAGCGTATGTC AACTTCATCTTCGAGCGGGTTTTCCCGCATGCTTGCCAAGATCAGGAACCCAACAGCAAAAGGCCCTTCTTGCCG CTGATGTTCACTATCCGAGGTGAGTACGACATTCCCGAGATGGAATTGGACCACCTCGATGGGTACAAAGGCAGC AAACCTGTTCGCATTGGCAATGCTGCCGTTTTCCACACGCAGCTGGACATCTACGGTGAATTGTTGGACAGTATC TACCTGTGTAACAAGCACGGAAACCCCATCACCTATGACCAATGGAACGCTATCCGGCGAATGATTAACTATGTC ATCGGTGTTCGGAACCAGAAGGATATGTCCATTTGGGAATCGCGTGGTCAGATCCAAAACTTTATCTATTCGAAG ATTATGATGTGGGTAGCCCTGGATCGTGGAATCCGCCTTGCGGAGAAGCGTGCTAGCCTACCATGCCCGGATCGC TTTGAATGGATCCGGGTCCGTGACGAGATGTACGACGAAATCATGACCAAAGGGTACAACGAAGAGCGTGGTCAT TTCTGCCAGAGTTATGAGAGTCGCGAGGTCTTGGATGCGTCCATCTTGATTGCACCCTTGGTATTCTTCGTAGCG CCCAATGATCCGCGGTTCATCAGCACGCTGAAGAAGATTTTGCAAAGCCCCGAGAAGGAGGGTCTGTCCAGCGCC AAGATGGTGTTCCGATATGACCACAAGAAAGCCAACGACGGTATGACAGGGGGTGAGGGTGCCTTCATCATGGTA ACCTTCTGGCTTGTCGAAGCCATGGCTCGTGCTGCCAAATATGATGTGGCCATTCCAAACATCTGGAAACTCGCA CTTGCGCACTTCGATAACATCCTGTCCTACGCGAATCACCTGGGCATGTTTTCTGAAGAAGTGGCCATTTCTGGT GAGCAGATGGGCAACTCTCCACAGGCCTTCAGCCACCTGGCTTGTATTAGCGCTGCAATCAATCTGGGAAGAAGT GGACGAATCGGCGAATAG |
| Transcript | >Pro_DTO377G3_2|g9164.t1 ATGACTGAACCTGCGTACAATGCCATTGAGGACTATGGCCTGGTCGGGGACATGCACACCTGTGCCCTGGTCAGC AAGGCCGGTAGTTTGGATTACATGTGCTGGCCAGTCTTTGACTCTCCTACCGTTTTCTGTCGTCTGCTGGACAAC CAGAAAGGAGGCTTCTTCGCCGTGAAGCCCTACAAGACGGTAGTAGATGCTCACAGCAAGCAGCGGTATCTTCCA TACTCGAACCTGCTTGAAACCAGGTGGACTGATGAGGATGGCGTCGCGACGCTGCTGGACTACTTTCCTGTCACA CCTAAAAAGACGGCGCAGTCGTCCCGGTTGTTGTCAGGATACTGTCCTTGCAATGAACCGGGAACCAATCGCTTC AAGTCAGGACTGCAGCACTCGGGCCTGATCAGAAAGCTGGAGTGTAGCCGTGGCTCAATGGAATTGAAAGTGGAG TTATTCCCTGCTTTTAATTATGCACGAGACTCGCACAATACCCGTGCAAAGCTAGAAGACGACTTGGACAAGCAC CGGCTGCAGACTGTCCACTTCGAGAGTGAGACAGAGCGGCTGCAACTCGAGATCTTTGCCGATTCACGGGAGCCA GATAAGCTTGGTTTCCCCTCGGCGTCTTTGAAACTGGAAGAACGAGAGGGCCTCCGTGGCCGCGGATTGGTGGCC TGGATCCGTTTGTCGGCGGGCCAGACCCTTCATCTGGTGTTGCATAGTCCCGAGAAGGCTGTCCCCAGCTCGGCC ACCATGGCAGCCTACCTCGCGCGAATGGAGGAGGAAACTTCCGACTATTGGACCGATTGGACACGCAAGTGTGCC TTCCGTGGTCATTACCGAGAGACAGTCGAGCGCAGTCTCCTAATTCTGAAGCTGTTGACCTACAAACCCACGGGT GCAATTGTCGCTGCGCCCACGTTCTCGCTTCCCGAAAATGTTGGAGGCTCCAGAAACTGGGATTATCGATATTCC TGGGTCCGTGACACAGCCTTCACGCTATATGTCTTTCTCAAAATGGGCTACAGCGAAGAAGCGGAAGCGTATGTC AACTTCATCTTCGAGCGGGTTTTCCCGCATGCTTGCCAAGATCAGGAACCCAACAGCAAAAGGCCCTTCTTGCCG CTGATGTTCACTATCCGAGGTGAGTACGACATTCCCGAGATGGAATTGGACCACCTCGATGGGTACAAAGGCAGC AAACCTGTTCGCATTGGCAATGCTGCCGTTTTCCACACGCAGCTGGACATCTACGGTGAATTGTTGGACAGTATC TACCTGTGTAACAAGCACGGAAACCCCATCACCTATGACCAATGGAACGCTATCCGGCGAATGATTAACTATGTC ATCGGTGTTCGGAACCAGAAGGATATGTCCATTTGGGAATCGCGTGGTCAGATCCAAAACTTTATCTATTCGAAG ATTATGATGTGGGTAGCCCTGGATCGTGGAATCCGCCTTGCGGAGAAGCGTGCTAGCCTACCATGCCCGGATCGC TTTGAATGGATCCGGGTCCGTGACGAGATGTACGACGAAATCATGACCAAAGGGTACAACGAAGAGCGTGGTCAT TTCTGCCAGAGTTATGAGAGTCGCGAGGTCTTGGATGCGTCCATCTTGATTGCACCCTTGGTATTCTTCGTAGCG CCCAATGATCCGCGGTTCATCAGCACGCTGAAGAAGATTTTGCAAAGCCCCGAGAAGGAGGGTCTGTCCAGCGCC AAGATGGTGTTCCGATATGACCACAAGAAAGCCAACGACGGTATGACAGGGGGTGAGGGTGCCTTCATCATGGTA ACCTTCTGGCTTGTCGAAGCCATGGCTCGTGCTGCCAAATATGATGTGGCCATTCCAAACATCTGGAAACTCGCA CTTGCGCACTTCGATAACATCCTGTCCTACGCGAATCACCTGGGCATGTTTTCTGAAGAAGTGGCCATTTCTGGT GAGCAGATGGGCAACTCTCCACAGGCCTTCAGCCACCTGGCTTGTATTAGCGCTGCAATCAATCTGGGAAGAAGT GGACGAATCGGCGAATAG |
| Gene | >Pro_DTO377G3_2|g9164.t1 ATGACTGAACCTGCGTACAATGCCATTGAGGACTATGGCCTGGTCGGGGACATGCACACCTGTGCCCTGGTCAGC AAGGCCGGTAGTTTGGATTACATGTGCTGGCCAGTCTTTGACTCTCCTACCGTTTTCTGTCGTCTGCTGGACAAC CAGAAAGGAGGCTTCTTCGCCGTGAAGCCCTACAAGACGGTAGTAGATGCTCACAGCAAGCAGCGGTATCTTCCA TACTCGAACCTGCTTGAAACCAGGTGGACTGATGAGGATGGCGTCGCGACGCTGCTGGACTACTTTCCTGTCACA CCTAAAAAGACGGCGCAGTCGTCCCGGTTGTTGTCAGGATACTGTCCTTGCAATGAACCGGGAACCAATCGCTTC AAGTCAGGACTGCAGCACTCGGGCCTGATCAGAAAGCTGGAGTGTAGCCGTGGCTCAATGGAATTGAAAGTGGAG TTATTCCCTGCTTTTAATTATGCACGAGACTCGCACAATACCCGTGCAAAGCTAGAAGACGACTTGGACAAGCAC CGGCTGCAGACTGTCCACTTCGAGAGTGAGACAGAGCGGCTGCAACTCGAGATCTTTGCCGATTCACGGGAGCCA GATAAGCTTGGTTTCCCCTCGGCGTCTTTGAAACTGGAAGAACGAGAGGGCCTCCGTGGCCGCGGATTGGTGGCC TGGATCCGTTTGTCGGCGGGCCAGACCCTTCATCTGGTGTTGCATAGTCCCGAGAAGGCTGTCCCCAGCTCGGCC ACCATGGCAGCCTACCTCGCGCGAATGGAGGAGGAAACTTCCGACTATTGGACCGATTGGACACGCAAGTGTGCC TTCCGTGGTCATTACCGAGAGACAGTCGAGCGCAGTCTCCTAATTCTGAAGCTGTTGACCTACAAACCCACGGGT GCAATTGTCGCTGCGCCCACGTTCTCGCTTCCCGAAAATGTTGGAGGCTCCAGAAACTGGGATTATCGATATTCC TGGGTCCGTGACACAGCCTTCACGCTATATGTCTTTCTCAAAATGGGCTACAGCGAAGAAGCGGAAGCGTATGTC AACTTCATCTTCGAGCGGGTTTTCCCGCATGCTTGCCAAGATCAGGAACCCAACAGCAAAAGGCCCTTCTTGCCG CTGATGTTCACTATCCGAGGTGAGTACGACATTCCCGAGATGGAATTGGACCACCTCGATGGGTACAAAGGCAGC AAACCTGTTCGCATTGGCAATGCTGCCGTTTTCCACACGCAGCTGGACATCTACGGTGAATTGTTGGACAGTATC TACCTGTGTAACAAGCACGGAAACCCCATCACCTATGACCAATGGAACGCTATCCGGCGAATGATTAACTATGTC ATCGGTGTTCGGAACCAGAAGGATATGTCCATTTGGGAATCGCGTGGTCAGATCCAAAACTTTATCTATTCGAAG ATTATGATGTGGGTAGCCCTGGATCGTGGAATCCGCCTTGCGGAGAAGCGTGCTAGCCTACCATGCCCGGATCGC TTTGAATGGATCCGGGTCCGTGACGAGATGTACGACGAAATCATGACCAAAGGGTACAACGAAGAGCGTGGTCAT TTCTGCCAGAGTTATGAGAGTCGCGAGGTCTTGGATGCGTCCATCTTGATTGCACCCTTGGTATTCTTCGTAGCG CCCAATGATCCGCGGTTCATCAGCACGCTGAAGAAGATTTTGCAAAGCCCCGAGAAGGAGGGTCTGTCCAGCGCC AAGATGGTGTTCCGATATGACCACAAGAAAGCCAACGACGGTAGGTATCGCTTGTCTATTAGAACTCTACAACAA GTGCTGATACTCGCGTTTCACAGGTATGACAGGGGGTGAGGGTGCCTTCATCATGGTAACCTTCTGGCTTGTCGA AGCCATGGCTCGTGTAGGTTCTATGGAACTACCTAAAAAAGCAACACTGAACTATGCTAACCTGAACTGAATCTG GAAATACAGGCTGCCAAATATGATGTGGCCATTCCAAACATCTGGAAACTCGCACTTGCGCACTTCGATAACATC CTGTCCTACGCGAATCACCTGGGCATGTTTTCTGAAGAAGTGGCCATTTCTGGTGAGCAGATGGGCAACTCTCCA CAGGCCTTCAGCCACCTGGCTTGTATTAGCGCTGCAATCAATCTGGGAAGAAGTGGACGAATCGGCGAATAG |