© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9158.t1 |
| Gene name | |
| Location | scaffold_42:124504..126355 |
| Strand | + |
| Gene length (bp) | 1851 |
| Transcript length (bp) | 1563 |
| Coding sequence length (bp) | 1563 |
| Protein length (aa) | 521 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00067 | p450 | Cytochrome P450 | 8.3E-40 | 46 | 494 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.60 | 0.19 | 3.01 |
| 5d_25C | Five days - 25 degrees Celsius | 1.81 | 0.24 | 3.37 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.60 | 1.21 | 8.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.18 | 0.14 | 4.21 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.99 | 0.29 | 5.69 |
| 7d_30C | Seven days - 30 degrees Celsius | 9.02 | 3.45 | 14.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.869649 | no |
| 3d_25C | 7d_25C | 0.018560 | yes |
| 3d_25C | 7d_15C | 0.245345 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.641547 | no |
| 5d_25C | 7d_25C | 0.032838 | yes |
| 5d_25C | 7d_15C | 0.362361 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.794344 | no |
| 7d_25C | 7d_15C | 0.383092 | no |
| 7d_25C | 7d_30C | 0.057742 | no |
| 7d_25C | 10d_25C | 0.122215 | no |
| 7d_15C | 7d_30C | 0.006742 | yes |
| 7d_15C | 10d_25C | 0.630425 | no |
| 7d_30C | 10d_25C | 0.002297 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9158.t1 MAVITELLNSPYVVQSVCIALVAVFITSFWADIANEIPHRHIPLVGKTWWELTNKKARQRFTRSSRQLITEGFAK GANVFQIIGATNPIVVLHPKFVDEIKNHPDLSFEDSIKKTFFDNRIPGFEPFHNGTSLKATVEIVRTSLTQALGS ISLRLSKETGAILKESLPATDEWKPYYLAHKIPYMVARLSSLIFVGETISHDDEWIDVSVNYAIDAFMAMRDLRE WPSILHPVVHWFLPSTRKLRTHLGMARSIINREIDRRALIRAGKLPADDPPRGPDALDWFRETAEIRNNLTFDQS CAQVGLALAAIHTTSNLLTNVMYDLAAYPEYIQPLRDEILAVAAEDGVLKKTSLLKLKLMDSVMKESQRTNPLSL TSMNRLALKQIVLSDGTVIPKGANMFVSTKTLEDDNIYPNAGTYDGYRFYNKRQQPGNEHKHQFVATTSEHFVFG HGVHACPGRFFAANETKIMFLHLLLKYDWKLQSGGRPPNIENGVESITDPRVQILFRSRESEVDLSFLGE* |
| Coding | >Pro_DTO377G3_2|g9158.t1 ATGGCAGTCATCACTGAATTGCTCAACAGTCCCTATGTCGTACAGAGTGTATGCATTGCCCTAGTGGCGGTGTTT ATAACGAGCTTTTGGGCAGATATAGCAAACGAGATTCCCCATAGACACATTCCTCTAGTTGGAAAAACCTGGTGG GAGCTTACCAACAAAAAGGCCCGGCAACGCTTTACTCGGTCATCTCGCCAACTAATTACCGAAGGATTTGCCAAG GGAGCAAATGTCTTTCAGATCATCGGAGCCACAAACCCGATAGTTGTATTGCATCCGAAGTTTGTCGATGAAATC AAGAACCACCCAGATCTCAGTTTTGAAGACTCCATCAAAAAGACATTTTTTGATAATCGCATTCCTGGGTTTGAA CCATTTCATAATGGCACCTCTTTGAAAGCTACCGTGGAGATTGTGCGGACCAGTTTGACCCAGGCGCTCGGGTCC ATCTCACTTCGGCTCTCAAAAGAGACAGGCGCGATATTGAAGGAATCCTTGCCCGCCACCGATGAATGGAAGCCC TACTACCTCGCGCATAAGATTCCGTACATGGTAGCTCGCCTCTCCTCTCTGATATTTGTCGGAGAAACCATCTCT CACGATGATGAGTGGATCGATGTTTCCGTTAACTATGCCATTGATGCGTTTATGGCTATGCGCGATCTACGAGAA TGGCCATCTATTCTCCATCCGGTCGTACACTGGTTCTTGCCCTCTACCCGAAAGCTACGCACGCACTTGGGAATG GCTCGCTCCATTATAAACCGCGAGATAGACAGGCGGGCATTGATTCGCGCGGGCAAGCTCCCAGCAGACGATCCA CCTCGTGGGCCTGATGCTCTGGACTGGTTTCGCGAGACCGCCGAAATCCGTAATAACTTGACCTTTGACCAGTCT TGTGCGCAGGTTGGATTGGCGCTGGCGGCCATTCATACCACATCTAACTTGTTAACTAACGTCATGTATGACCTC GCGGCGTACCCGGAGTATATCCAGCCGCTGCGTGATGAGATTTTAGCGGTTGCTGCCGAAGATGGAGTTCTGAAG AAGACGAGTTTGCTCAAGTTGAAGTTGATGGACAGTGTGATGAAGGAATCGCAGCGTACTAATCCACTCTCATTG ACTTCCATGAATCGCCTCGCCCTCAAGCAAATTGTGCTCTCCGATGGAACTGTGATTCCTAAAGGTGCCAACATG TTCGTCTCTACGAAAACCCTGGAAGATGACAACATCTACCCTAATGCTGGCACTTATGATGGTTACCGGTTTTAC AACAAACGCCAGCAGCCCGGCAACGAACACAAGCATCAGTTTGTCGCGACGACAAGTGAGCACTTCGTCTTCGGC CATGGTGTTCACGCCTGCCCTGGTCGATTCTTTGCTGCCAATGAAACCAAGATTATGTTCCTTCATTTGCTCCTG AAGTACGATTGGAAACTGCAGAGCGGCGGTCGACCTCCGAACATTGAGAATGGTGTCGAATCTATCACCGACCCA CGAGTTCAGATTTTGTTTCGGTCGCGTGAGTCGGAGGTTGACCTAAGTTTCCTAGGAGAGTGA |
| Transcript | >Pro_DTO377G3_2|g9158.t1 ATGGCAGTCATCACTGAATTGCTCAACAGTCCCTATGTCGTACAGAGTGTATGCATTGCCCTAGTGGCGGTGTTT ATAACGAGCTTTTGGGCAGATATAGCAAACGAGATTCCCCATAGACACATTCCTCTAGTTGGAAAAACCTGGTGG GAGCTTACCAACAAAAAGGCCCGGCAACGCTTTACTCGGTCATCTCGCCAACTAATTACCGAAGGATTTGCCAAG GGAGCAAATGTCTTTCAGATCATCGGAGCCACAAACCCGATAGTTGTATTGCATCCGAAGTTTGTCGATGAAATC AAGAACCACCCAGATCTCAGTTTTGAAGACTCCATCAAAAAGACATTTTTTGATAATCGCATTCCTGGGTTTGAA CCATTTCATAATGGCACCTCTTTGAAAGCTACCGTGGAGATTGTGCGGACCAGTTTGACCCAGGCGCTCGGGTCC ATCTCACTTCGGCTCTCAAAAGAGACAGGCGCGATATTGAAGGAATCCTTGCCCGCCACCGATGAATGGAAGCCC TACTACCTCGCGCATAAGATTCCGTACATGGTAGCTCGCCTCTCCTCTCTGATATTTGTCGGAGAAACCATCTCT CACGATGATGAGTGGATCGATGTTTCCGTTAACTATGCCATTGATGCGTTTATGGCTATGCGCGATCTACGAGAA TGGCCATCTATTCTCCATCCGGTCGTACACTGGTTCTTGCCCTCTACCCGAAAGCTACGCACGCACTTGGGAATG GCTCGCTCCATTATAAACCGCGAGATAGACAGGCGGGCATTGATTCGCGCGGGCAAGCTCCCAGCAGACGATCCA CCTCGTGGGCCTGATGCTCTGGACTGGTTTCGCGAGACCGCCGAAATCCGTAATAACTTGACCTTTGACCAGTCT TGTGCGCAGGTTGGATTGGCGCTGGCGGCCATTCATACCACATCTAACTTGTTAACTAACGTCATGTATGACCTC GCGGCGTACCCGGAGTATATCCAGCCGCTGCGTGATGAGATTTTAGCGGTTGCTGCCGAAGATGGAGTTCTGAAG AAGACGAGTTTGCTCAAGTTGAAGTTGATGGACAGTGTGATGAAGGAATCGCAGCGTACTAATCCACTCTCATTG ACTTCCATGAATCGCCTCGCCCTCAAGCAAATTGTGCTCTCCGATGGAACTGTGATTCCTAAAGGTGCCAACATG TTCGTCTCTACGAAAACCCTGGAAGATGACAACATCTACCCTAATGCTGGCACTTATGATGGTTACCGGTTTTAC AACAAACGCCAGCAGCCCGGCAACGAACACAAGCATCAGTTTGTCGCGACGACAAGTGAGCACTTCGTCTTCGGC CATGGTGTTCACGCCTGCCCTGGTCGATTCTTTGCTGCCAATGAAACCAAGATTATGTTCCTTCATTTGCTCCTG AAGTACGATTGGAAACTGCAGAGCGGCGGTCGACCTCCGAACATTGAGAATGGTGTCGAATCTATCACCGACCCA CGAGTTCAGATTTTGTTTCGGTCGCGTGAGTCGGAGGTTGACCTAAGTTTCCTAGGAGAGTGA |
| Gene | >Pro_DTO377G3_2|g9158.t1 ATGGCAGTCATCACTGAATTGCTCAACAGTCCCTATGTCGTACAGAGTGTATGCATTGCCCTAGTGGCGGTGTTT ATAACGAGCTTTTGGGCAGATATAGCAAACGAGATTCCCCATAGACACATTCCTCTAGTTGGAAAAACCTGGTGG GAGCTTACCAACAAAAAGGCCCGGCAACGCTTTACTCGGTCATCTCGCCAACTAATTACCGAAGGATTTGCCAAG GTGAGTCCTAAGAGAAATAGATGACAGCATTATCTACTCTCAAATATGTTAATAGGCCTTTGCAGGGAGCAAATG TCTTTCAGATCATCGGAGCCACAAACCCGATAGTTGTATTGCATCCGAAGTTTGTCGATGAAATCAAGAACCACC CAGATCTCAGTTTTGAAGACTCCATCAAAAAGGCAGGTTATGAAACCGGAAATAATCCCTGACCTTGGCTAACTT GTGAATAGACATTTTTTGATAATCGCATTCCTGGGTTTGAACCATTTCATAATGGCACCTCTTTGAAAGCTACCG TGGAGATTGTGCGGACCAGTTTGACCCAGGCGCTCGGTATGCATGTTTGCATCTATCTCACCCGAGAGACATGAT TGACTTATTTAAACAGGGTCCATCTCACTTCGGCTCTCAAAAGAGACAGGCGCGATATTGAAGGAATCCTTGCCC GCCACCGATGGTATGCCGACGCACCCCATTTGCAACCCTCTTACTGACGCTTCCTCTCTTGGTAGAATGGAAGCC CTACTACCTCGCGCATAAGATTCCGTACATGGTAGCTCGCCTCTCCTCTCTGATATTTGTCGGAGAAACCATCTC TCACGATGATGAGTGGATCGATGTTTCCGTTAACTATGCCATTGATGCGTTTATGGCTATGCGCGATCTACGAGA ATGGCCATCTATTCTCCATCCGGTCGTACACTGGTTCTTGCCCTCTACCCGAAAGCTACGCACGCACTTGGGAAT GGCTCGCTCCATTATAAACCGCGAGATAGACAGGCGGGCATTGATTCGCGCGGGCAAGCTCCCAGCAGACGATCC ACCTCGTGGGCCTGATGCTCTGGACTGGTTTCGCGAGACCGCCGAAATCCGTAATAACTTGACCTTTGACCAGTC TTGTGCGCAGGTTGGATTGGCGCTGGCGGCCATTCATACCACATCTAACTTGTTAACTAACGTCATGTATGACCT CGCGGCGTACCCGGAGTATATCCAGCCGCTGCGTGATGAGATTTTAGCGGTTGCTGCCGAAGATGGAGTTCTGAA GAAGACGAGTTTGCTCAAGTTGAAGTTGATGGACAGTGTGATGAAGGAATCGCAGCGTACTAATCCACTCTCATT GAGTAAGTCATCCAGGTTCTTTCGATCCTCTTTCGATTTAAACCTCTTATTGACACCCCAATAGCTTCCATGAAT CGCCTCGCCCTCAAGCAAATTGTGCTCTCCGATGGAACTGTGATTCCTAAAGGTGCCAACATGTTCGTCTCTACG AAAACCCTGGAAGATGACAACATCTACCCTAATGCTGGCACTTATGATGGTTACCGGTTTTACAACAAACGCCAG CAGCCCGGCAACGAACACAAGCATCAGTTTGTCGCGACGACAAGTGAGCACTTCGTCTTCGGCCATGGTGTTCAC GCCTGCCCTGGTCGATTCTTTGCTGCCAATGAAACCAAGATTATGTTCCTTCATTTGCTCCTGAAGTACGATTGG AAACTGCAGAGCGGCGGTCGACCTCCGAACATTGAGAATGGTGTCGAATCTATCACCGACCCACGAGTTCAGATT TTGTTTCGGTCGCGTGAGTCGGAGGTTGACCTAAGTTTCCTAGGAGAGTGA |