© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g915.t1 |
| Gene name | |
| Location | scaffold_01:2424748..2427059 |
| Strand | + |
| Gene length (bp) | 2311 |
| Transcript length (bp) | 2259 |
| Coding sequence length (bp) | 2259 |
| Protein length (aa) | 753 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00732 | GMC_oxred_N | GMC oxidoreductase | 7.3E-49 | 223 | 496 |
| PF05199 | GMC_oxred_C | GMC oxidoreductase | 1.1E-28 | 579 | 729 |
| PF00890 | FAD_binding_2 | FAD binding domain | 2.5E-06 | 223 | 256 |
| PF01494 | FAD_binding_3 | FAD binding domain | 1.8E-05 | 221 | 254 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 49 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 33.16 | 19.95 | 46.37 |
| 5d_25C | Five days - 25 degrees Celsius | 38.32 | 23.34 | 53.29 |
| 7d_25C | Seven days - 25 degrees Celsius | 42.45 | 25.87 | 59.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 45.47 | 27.71 | 63.23 |
| 7d_15C | Seven days - 15 degrees Celsius | 31.59 | 19.01 | 44.18 |
| 7d_30C | Seven days - 30 degrees Celsius | 41.42 | 25.16 | 57.67 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.598775 | no |
| 3d_25C | 7d_25C | 0.305440 | no |
| 3d_25C | 7d_15C | 0.887918 | no |
| 3d_25C | 7d_30C | 0.374184 | no |
| 3d_25C | 10d_25C | 0.167878 | no |
| 5d_25C | 7d_25C | 0.725716 | no |
| 5d_25C | 7d_15C | 0.450309 | no |
| 5d_25C | 7d_30C | 0.799859 | no |
| 5d_25C | 10d_25C | 0.509886 | no |
| 7d_25C | 7d_15C | 0.198175 | no |
| 7d_25C | 7d_30C | 0.943709 | no |
| 7d_25C | 10d_25C | 0.821908 | no |
| 7d_15C | 7d_30C | 0.257440 | no |
| 7d_15C | 10d_25C | 0.104886 | no |
| 7d_30C | 10d_25C | 0.750738 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g915.t1 MPTLAVSTYTPRDVPLPPAPSATYFSELQWKTFYALADAVVPSIHTAATTKSSNDRVISNAEWNSAVSSLSTAIS GPDAVNLATQYLQENVSSNPQFRAAVERLLGDYVNDEGRNGFGFIMSALNTRAGSLVMTGSTTPIQDQPIEFREK ILRGWDTSRLAPLRAIYRGLTAIVKKCWVISSPTISPVLGFPSIPIHGEQVDGFQFEFLQFPSGDQPETIETDVV IVGSGCGGSVAAKNLAEAGYRVLVVEKSYSYPTNTFPMGANEGYTNMFENGGAVSSDDGSMAVLAGSTWGGGGTV NWSAALQTQGYVRQQWADTGLPFFTSLDFQKSLDRVCDRMGVNDDHVEHNYQNKVVIEGARKLGYAVKTVPQNTG HGEHYCGYCTLGCASGGKKGPTESFLVDAAQAGAKFIEGFRADKVLFTTVKGKKVASGVQGTWKSRDSYLGLAGI GAVERRLIIKAKKVVVSAGTLQSPLLLLRSGLKNPQIGRNLHLHPVLAASAVFDEDTHPWEGSALTTVVTEFEDL DGNGHGAKIETAAMLPSVVIPIFPWRDSLEYKMWAAKMRHSTSFIVLTKERDTGRVYPDPVDGRCRIDYTVSAFD RKHMVETLIGIAKIAYISGAKEFHTVYRDLPPFIRPETSDPEAPEGINNTALQSWIAELRAKSPLNPERGLFASA HQMGTCRMSKSPKLGVVDPNCQVWGTDGLYVVDASVFPSASGVNPMVTNMGIADWASRNLARAMGTVPGEGNVMA RL* |
| Coding | >Pro_DTO377G3_2|g915.t1 ATGCCAACCCTCGCTGTTTCCACATACACCCCGAGGGATGTCCCTCTTCCGCCAGCGCCGTCGGCCACTTACTTC TCGGAGTTGCAGTGGAAAACCTTCTATGCGCTGGCCGACGCAGTTGTGCCCTCTATCCACACTGCAGCAACTACC AAGTCATCGAACGACCGGGTGATTTCAAATGCAGAGTGGAATTCCGCCGTGTCGAGCTTGTCAACGGCTATCTCT GGACCTGACGCCGTAAACCTTGCCACCCAGTACCTGCAAGAAAATGTCTCTTCGAACCCGCAATTCCGGGCCGCA GTGGAGCGACTCCTGGGCGACTATGTGAATGACGAGGGAAGAAATGGGTTTGGTTTCATCATGTCAGCGCTCAAC ACCCGTGCTGGTTCTCTGGTCATGACGGGCTCCACCACTCCGATCCAGGACCAACCGATTGAATTCCGAGAAAAG ATCTTGCGCGGATGGGACACCTCTCGATTGGCTCCTCTCCGCGCCATCTACCGAGGACTCACGGCCATTGTTAAG AAGTGTTGGGTTATCAGCAGTCCAACCATAAGCCCGGTTCTGGGGTTCCCAAGCATCCCTATTCATGGCGAGCAG GTCGACGGTTTCCAGTTTGAGTTTTTGCAGTTCCCTTCTGGGGATCAGCCAGAAACGATTGAAACCGACGTCGTT ATCGTGGGAAGTGGCTGCGGCGGTAGCGTGGCTGCAAAGAACCTCGCCGAAGCGGGCTATCGAGTGCTGGTGGTG GAAAAGTCCTATTCATACCCGACCAACACGTTCCCCATGGGCGCGAATGAGGGATATACCAACATGTTCGAGAAC GGGGGCGCTGTCTCCAGTGACGATGGCTCGATGGCGGTCCTAGCGGGCTCAACGTGGGGTGGTGGTGGTACCGTG AATTGGTCGGCCGCTTTACAGACCCAGGGGTATGTCCGACAGCAATGGGCGGATACTGGTCTCCCTTTCTTCACC TCCCTCGACTTCCAGAAAAGCTTGGACCGCGTCTGTGATCGCATGGGTGTTAACGACGATCATGTTGAGCATAAC TACCAGAATAAGGTGGTTATTGAAGGCGCAAGGAAACTGGGATATGCCGTGAAAACAGTTCCCCAGAATACAGGT CACGGCGAACACTACTGTGGGTATTGCACGTTAGGATGCGCGTCGGGTGGGAAGAAAGGCCCAACGGAGTCGTTC CTTGTGGATGCTGCTCAGGCCGGCGCAAAATTCATCGAAGGATTCCGTGCCGACAAAGTGCTATTCACCACCGTC AAAGGCAAAAAGGTTGCTTCTGGCGTACAAGGAACTTGGAAGTCACGGGATTCATACTTGGGCCTCGCTGGTATT GGGGCTGTGGAACGTCGGCTGATTATCAAGGCTAAGAAAGTAGTTGTATCAGCTGGCACATTGCAAAGTCCTCTT CTGCTGTTGCGTAGTGGTTTGAAGAATCCTCAGATTGGCCGAAACCTTCATCTTCACCCTGTGCTTGCGGCTAGT GCTGTCTTTGATGAGGATACTCACCCCTGGGAAGGCTCTGCGTTGACAACGGTTGTCACCGAGTTTGAGGACCTT GATGGAAATGGACATGGTGCGAAGATTGAGACTGCCGCAATGTTGCCTTCCGTGGTCATTCCTATCTTCCCCTGG CGAGACTCATTGGAGTATAAGATGTGGGCGGCCAAGATGCGTCACAGCACGAGCTTCATCGTCTTAACCAAAGAA CGCGATACTGGTCGTGTCTACCCAGATCCGGTCGATGGACGCTGCCGGATTGATTACACGGTATCTGCCTTTGAC CGGAAACACATGGTGGAGACCCTGATTGGCATCGCCAAGATTGCGTATATCTCAGGAGCCAAAGAGTTCCATACT GTTTACCGCGACCTTCCCCCCTTCATCCGGCCAGAGACTTCAGACCCCGAGGCCCCTGAAGGCATTAACAATACG GCTCTGCAGAGTTGGATTGCCGAGCTTCGTGCGAAGTCCCCTTTGAACCCGGAGCGTGGTTTGTTTGCCAGTGCA CACCAGATGGGTACCTGCCGCATGAGCAAGTCACCTAAATTAGGTGTGGTGGACCCGAATTGTCAAGTCTGGGGC ACTGACGGGTTGTATGTCGTGGATGCGTCCGTGTTCCCTAGCGCCAGCGGTGTGAATCCGATGGTCACTAATATG GGTATCGCCGATTGGGCCAGCCGAAACCTCGCGCGGGCGATGGGAACGGTACCAGGCGAGGGCAACGTGATGGCT CGTCTGTGA |
| Transcript | >Pro_DTO377G3_2|g915.t1 ATGCCAACCCTCGCTGTTTCCACATACACCCCGAGGGATGTCCCTCTTCCGCCAGCGCCGTCGGCCACTTACTTC TCGGAGTTGCAGTGGAAAACCTTCTATGCGCTGGCCGACGCAGTTGTGCCCTCTATCCACACTGCAGCAACTACC AAGTCATCGAACGACCGGGTGATTTCAAATGCAGAGTGGAATTCCGCCGTGTCGAGCTTGTCAACGGCTATCTCT GGACCTGACGCCGTAAACCTTGCCACCCAGTACCTGCAAGAAAATGTCTCTTCGAACCCGCAATTCCGGGCCGCA GTGGAGCGACTCCTGGGCGACTATGTGAATGACGAGGGAAGAAATGGGTTTGGTTTCATCATGTCAGCGCTCAAC ACCCGTGCTGGTTCTCTGGTCATGACGGGCTCCACCACTCCGATCCAGGACCAACCGATTGAATTCCGAGAAAAG ATCTTGCGCGGATGGGACACCTCTCGATTGGCTCCTCTCCGCGCCATCTACCGAGGACTCACGGCCATTGTTAAG AAGTGTTGGGTTATCAGCAGTCCAACCATAAGCCCGGTTCTGGGGTTCCCAAGCATCCCTATTCATGGCGAGCAG GTCGACGGTTTCCAGTTTGAGTTTTTGCAGTTCCCTTCTGGGGATCAGCCAGAAACGATTGAAACCGACGTCGTT ATCGTGGGAAGTGGCTGCGGCGGTAGCGTGGCTGCAAAGAACCTCGCCGAAGCGGGCTATCGAGTGCTGGTGGTG GAAAAGTCCTATTCATACCCGACCAACACGTTCCCCATGGGCGCGAATGAGGGATATACCAACATGTTCGAGAAC GGGGGCGCTGTCTCCAGTGACGATGGCTCGATGGCGGTCCTAGCGGGCTCAACGTGGGGTGGTGGTGGTACCGTG AATTGGTCGGCCGCTTTACAGACCCAGGGGTATGTCCGACAGCAATGGGCGGATACTGGTCTCCCTTTCTTCACC TCCCTCGACTTCCAGAAAAGCTTGGACCGCGTCTGTGATCGCATGGGTGTTAACGACGATCATGTTGAGCATAAC TACCAGAATAAGGTGGTTATTGAAGGCGCAAGGAAACTGGGATATGCCGTGAAAACAGTTCCCCAGAATACAGGT CACGGCGAACACTACTGTGGGTATTGCACGTTAGGATGCGCGTCGGGTGGGAAGAAAGGCCCAACGGAGTCGTTC CTTGTGGATGCTGCTCAGGCCGGCGCAAAATTCATCGAAGGATTCCGTGCCGACAAAGTGCTATTCACCACCGTC AAAGGCAAAAAGGTTGCTTCTGGCGTACAAGGAACTTGGAAGTCACGGGATTCATACTTGGGCCTCGCTGGTATT GGGGCTGTGGAACGTCGGCTGATTATCAAGGCTAAGAAAGTAGTTGTATCAGCTGGCACATTGCAAAGTCCTCTT CTGCTGTTGCGTAGTGGTTTGAAGAATCCTCAGATTGGCCGAAACCTTCATCTTCACCCTGTGCTTGCGGCTAGT GCTGTCTTTGATGAGGATACTCACCCCTGGGAAGGCTCTGCGTTGACAACGGTTGTCACCGAGTTTGAGGACCTT GATGGAAATGGACATGGTGCGAAGATTGAGACTGCCGCAATGTTGCCTTCCGTGGTCATTCCTATCTTCCCCTGG CGAGACTCATTGGAGTATAAGATGTGGGCGGCCAAGATGCGTCACAGCACGAGCTTCATCGTCTTAACCAAAGAA CGCGATACTGGTCGTGTCTACCCAGATCCGGTCGATGGACGCTGCCGGATTGATTACACGGTATCTGCCTTTGAC CGGAAACACATGGTGGAGACCCTGATTGGCATCGCCAAGATTGCGTATATCTCAGGAGCCAAAGAGTTCCATACT GTTTACCGCGACCTTCCCCCCTTCATCCGGCCAGAGACTTCAGACCCCGAGGCCCCTGAAGGCATTAACAATACG GCTCTGCAGAGTTGGATTGCCGAGCTTCGTGCGAAGTCCCCTTTGAACCCGGAGCGTGGTTTGTTTGCCAGTGCA CACCAGATGGGTACCTGCCGCATGAGCAAGTCACCTAAATTAGGTGTGGTGGACCCGAATTGTCAAGTCTGGGGC ACTGACGGGTTGTATGTCGTGGATGCGTCCGTGTTCCCTAGCGCCAGCGGTGTGAATCCGATGGTCACTAATATG GGTATCGCCGATTGGGCCAGCCGAAACCTCGCGCGGGCGATGGGAACGGTACCAGGCGAGGGCAACGTGATGGCT CGTCTGTGA |
| Gene | >Pro_DTO377G3_2|g915.t1 ATGCCAACCCTCGCTGTTTCCACATACACCCCGAGGGATGTCCCTCTTCCGCCAGCGCCGTCGGCCACTTACTTC TCGGAGTTGCAGTGGAAAACCTTCTATGCGCTGGCCGACGCAGTTGTGCCCTCTATCCACACTGCAGCAACTACC AAGTCATCGAACGACCGGGTGATTTCAAATGCAGAGTGGAATTCCGCCGTGTCGAGCTTGTCAACGGCTATCTCT GGACCTGACGCCGTAAACCTTGCCACCCAGTACCTGCAAGAAAATGTCTCTTCGAACCCGCAATTCCGGGCCGCA GTGGAGCGACTCCTGGGCGACTATGTGAATGACGAGGGAAGAAATGGGTTTGGTTTCATCATGTCAGCGCTCAAC ACCCGTGCTGGTTCTCTGGTCATGACGGGCTCCACCACTCCGATCCAGGACCAACCGATTGAATTCCGAGAAAAG ATCTTGCGCGGATGGGACACCTCTCGATTGGCTCCTCTCCGCGCCATCTACCGAGGACTCACGGCCATTGTTAAG AAGTGTTGGGTTATCAGCAGTCCAACCATAAGCCCGGTTCTGGGGTTCCCAAGCATCCCTATTCATGGCGAGCAG GTCGACGGTTTCCAGTTTGAGTTTTTGCAGTTCCCTTCTGGGGATCAGCCAGAAACGATTGAAACCGACGTCGTT ATCGTGGGAAGTGGCTGCGGCGGTAGCGTGGCTGCAAAGAACCTCGCCGAAGCGGGCTATCGAGTGCTGGTGGTG GAAAAGTCCTATTCATACCCGACCAACACGTTCCCCATGGGCGCGAATGAGGGATATACCAACATGTTCGAGAAC GGGGGCGCTGTCTCCAGTGACGATGGCTCGATGGCGGTCCTAGCGGGCTCAACGTGGGGTGGTGGTGGTACCGTG AATTGGTCGGCCGCTTTACAGACCCAGGGGTATGTCCGACAGCAATGGGCGGATACTGGTCTCCCTTTCTTCACC TCCCTCGACTTCCAGAAAAGCTTGGACCGCGTCTGTGATCGCATGGGTGTTAACGACGATCATGTTGAGCATAAC TACCAGAATAAGGTGGTTATTGAAGGCGCAAGGAAACTGGGATATGCCGTGAAAACAGTTCCCCAGAATACAGGT CACGGCGAACACTACTGTGGGTATTGCACGTTAGGATGCGCGTCGGGTGGGAAGAAAGGCCCAACGGAGTCGTTC CTTGTGGATGCTGCTCAGGCCGGCGCAAAATTCATCGAAGGATTCCGTGCCGACAAAGTGCTATTCACCACCGTC AAAGGCAAAAAGGTTGCTTCTGGCGTACAAGGAACTTGGAAGTCACGGGATTCATACTTGGGCCTCGCTGGTATT GGGGCTGTGGAACGTCGGCTGATTATCAAGGCTAAGAAAGTAGTTGTATCAGCTGGCACATTGCAAAGTCCTCTT CTGCTGTTGCGTAGTGGTTTGAAGAATCCTCAGATTGGCCGAAACCTTCATCTTCACCCTGGTAAGAACTTTCTT TCACAGCACATTTTACAGGCACTTATTTTCTTCTACAGTGCTTGCGGCTAGTGCTGTCTTTGATGAGGATACTCA CCCCTGGGAAGGCTCTGCGTTGACAACGGTTGTCACCGAGTTTGAGGACCTTGATGGAAATGGACATGGTGCGAA GATTGAGACTGCCGCAATGTTGCCTTCCGTGGTCATTCCTATCTTCCCCTGGCGAGACTCATTGGAGTATAAGAT GTGGGCGGCCAAGATGCGTCACAGCACGAGCTTCATCGTCTTAACCAAAGAACGCGATACTGGTCGTGTCTACCC AGATCCGGTCGATGGACGCTGCCGGATTGATTACACGGTATCTGCCTTTGACCGGAAACACATGGTGGAGACCCT GATTGGCATCGCCAAGATTGCGTATATCTCAGGAGCCAAAGAGTTCCATACTGTTTACCGCGACCTTCCCCCCTT CATCCGGCCAGAGACTTCAGACCCCGAGGCCCCTGAAGGCATTAACAATACGGCTCTGCAGAGTTGGATTGCCGA GCTTCGTGCGAAGTCCCCTTTGAACCCGGAGCGTGGTTTGTTTGCCAGTGCACACCAGATGGGTACCTGCCGCAT GAGCAAGTCACCTAAATTAGGTGTGGTGGACCCGAATTGTCAAGTCTGGGGCACTGACGGGTTGTATGTCGTGGA TGCGTCCGTGTTCCCTAGCGCCAGCGGTGTGAATCCGATGGTCACTAATATGGGTATCGCCGATTGGGCCAGCCG AAACCTCGCGCGGGCGATGGGAACGGTACCAGGCGAGGGCAACGTGATGGCTCGTCTGTGA |