© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9147.t1 |
| Gene name | |
| Location | scaffold_42:90268..90835 |
| Strand | + |
| Gene length (bp) | 567 |
| Transcript length (bp) | 456 |
| Coding sequence length (bp) | 456 |
| Protein length (aa) | 152 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12273 | RCR | Chitin synthesis regulation, resistance to Congo red | 2.0E-21 | 27 | 146 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 28 | 50 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 297.02 | 178.20 | 415.84 |
| 5d_25C | Five days - 25 degrees Celsius | 267.14 | 160.56 | 373.71 |
| 7d_25C | Seven days - 25 degrees Celsius | 243.57 | 145.42 | 341.73 |
| 10d_25C | Ten days - 25 degrees Celsius | 244.15 | 145.53 | 342.78 |
| 7d_15C | Seven days - 15 degrees Celsius | 260.59 | 154.19 | 366.99 |
| 7d_30C | Seven days - 30 degrees Celsius | 258.45 | 154.88 | 362.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.718824 | no |
| 3d_25C | 7d_25C | 0.435401 | no |
| 3d_25C | 7d_15C | 0.650497 | no |
| 3d_25C | 7d_30C | 0.613759 | no |
| 3d_25C | 10d_25C | 0.439652 | no |
| 5d_25C | 7d_25C | 0.765119 | no |
| 5d_25C | 7d_15C | 0.945569 | no |
| 5d_25C | 7d_30C | 0.925021 | no |
| 5d_25C | 10d_25C | 0.772478 | no |
| 7d_25C | 7d_15C | 0.832961 | no |
| 7d_25C | 7d_30C | 0.853335 | no |
| 7d_25C | 10d_25C | 0.994324 | no |
| 7d_15C | 7d_30C | 0.982424 | no |
| 7d_15C | 10d_25C | 0.842906 | no |
| 7d_30C | 10d_25C | 0.861409 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9147.t1 MPALYPRYCSGYFGDNDCYSTWDSWGRWVAFAVIVGVAFLIFFGFACFNARRRRNHGQRPLTGTGWMAPPPGPPP PNQPIYQQPPYGDPYYQQNAPPQYTPNPQNYGYFGAQNAPPQQQGIELQQPPNAYTANSPHGYAPPPGPPPNGNK D* |
| Coding | >Pro_DTO377G3_2|g9147.t1 ATGCCAGCCCTATATCCTCGATACTGCTCTGGTTACTTTGGGGATAATGACTGCTATTCCACCTGGGACTCTTGG GGTCGCTGGGTAGCGTTCGCCGTGATCGTCGGTGTAGCCTTCCTAATCTTCTTCGGTTTCGCATGCTTCAACGCA CGCCGTCGCCGAAATCATGGCCAACGCCCTCTCACAGGAACGGGATGGATGGCTCCTCCTCCGGGCCCTCCTCCG CCAAATCAACCCATCTACCAGCAACCCCCATATGGCGACCCCTACTACCAGCAAAATGCGCCCCCTCAATACACC CCGAACCCTCAGAACTACGGCTACTTTGGTGCGCAAAACGCACCACCACAACAGCAAGGCATCGAGTTGCAGCAG CCTCCGAATGCGTACACTGCCAACAGTCCCCACGGATATGCGCCGCCTCCTGGTCCGCCGCCCAACGGCAATAAG GACTAA |
| Transcript | >Pro_DTO377G3_2|g9147.t1 ATGCCAGCCCTATATCCTCGATACTGCTCTGGTTACTTTGGGGATAATGACTGCTATTCCACCTGGGACTCTTGG GGTCGCTGGGTAGCGTTCGCCGTGATCGTCGGTGTAGCCTTCCTAATCTTCTTCGGTTTCGCATGCTTCAACGCA CGCCGTCGCCGAAATCATGGCCAACGCCCTCTCACAGGAACGGGATGGATGGCTCCTCCTCCGGGCCCTCCTCCG CCAAATCAACCCATCTACCAGCAACCCCCATATGGCGACCCCTACTACCAGCAAAATGCGCCCCCTCAATACACC CCGAACCCTCAGAACTACGGCTACTTTGGTGCGCAAAACGCACCACCACAACAGCAAGGCATCGAGTTGCAGCAG CCTCCGAATGCGTACACTGCCAACAGTCCCCACGGATATGCGCCGCCTCCTGGTCCGCCGCCCAACGGCAATAAG GACTAA |
| Gene | >Pro_DTO377G3_2|g9147.t1 ATGCCAGCCCTATATCCTCGATACTGGTAGGTGCTATGATGACTCCCGTCAAGAGACATATCACTGATCCGTTAC AGCTCTGGTTACTTTGGGGATAATGACTGCTATTCCACCTGGGACTCTTGGGGTCGCTGGGTAGCGTTCGCCGTG ATCGTCGGTGTAGCCTTCCTAATCTTCTTCGGTTTCGCGTGAGTCTTACCTAATTCTCTTCTATGCGATGTCTCG CGATTTTAACAAGCTTGTCACAGATGCTTCAACGCACGCCGTCGCCGAAATCATGGCCAACGCCCTCTCACAGGA ACGGGATGGATGGCTCCTCCTCCGGGCCCTCCTCCGCCAAATCAACCCATCTACCAGCAACCCCCATATGGCGAC CCCTACTACCAGCAAAATGCGCCCCCTCAATACACCCCGAACCCTCAGAACTACGGCTACTTTGGTGCGCAAAAC GCACCACCACAACAGCAAGGCATCGAGTTGCAGCAGCCTCCGAATGCGTACACTGCCAACAGTCCCCACGGATAT GCGCCGCCTCCTGGTCCGCCGCCCAACGGCAATAAGGACTAA |