© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9145.t1 |
| Gene name | |
| Location | scaffold_42:83868..85814 |
| Strand | - |
| Gene length (bp) | 1946 |
| Transcript length (bp) | 1677 |
| Coding sequence length (bp) | 1677 |
| Protein length (aa) | 559 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00450 | Peptidase_S10 | Serine carboxypeptidase | 4.1E-107 | 64 | 514 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006508 | proteolysis | Yes |
| GO:0004185 | serine-type carboxypeptidase activity | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0004180 | carboxypeptidase activity | No |
| GO:0008238 | exopeptidase activity | No |
| GO:0019538 | protein metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0070008 | serine-type exopeptidase activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 17 | 0.996245 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.90 | 1.58 | 8.22 |
| 5d_25C | Five days - 25 degrees Celsius | 16.32 | 8.10 | 24.54 |
| 7d_25C | Seven days - 25 degrees Celsius | 22.70 | 12.26 | 33.14 |
| 10d_25C | Ten days - 25 degrees Celsius | 36.03 | 20.98 | 51.07 |
| 7d_15C | Seven days - 15 degrees Celsius | 29.05 | 16.35 | 41.75 |
| 7d_30C | Seven days - 30 degrees Celsius | 24.42 | 13.33 | 35.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.241443 | no |
| 5d_25C | 7d_15C | 0.019353 | yes |
| 5d_25C | 7d_30C | 0.135674 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.377315 | no |
| 7d_25C | 7d_30C | 0.840294 | no |
| 7d_25C | 10d_25C | 0.050137 | no |
| 7d_15C | 7d_30C | 0.561238 | no |
| 7d_15C | 10d_25C | 0.434506 | no |
| 7d_30C | 10d_25C | 0.110900 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 8412 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9145.t1 MRVSHWIPLLPAVAALAVPSDSLEGLEALIRRQLPKHPTHVKTIKTANNVTIRYKEPGKEGVCETTPGVNSYSGY VDLSPTEHTFFWFFEARHDPENAPITLWLNGGPGSDSLIGLFEELGPCGVNKNNESYINKNSWNEVSNLLFISQP LGVGFSYAEKAAGTLNPITGSYEDPSFAGIDGRYPVINATAIDTTVLAAKATWEVLQGFLGGLPKLDSKIKSKSF NLWTESYGGHYGPAFFDHFYEENLKIANGTQHGIQLDFNTLGIINGIIDEGIQARHYPEFAVNNTYGIKAVNETV YNYMRFANEMPNGCQDQIATCKLTNRTSLSDLALCTEATNMCRDNVESPYYVFGERGAYDIRHPSDDPTPEGYYI NYLAKDSVLNALGVDINYTQSNNEVYFAFQQTGDFVWPNFLEDLEDILSRPVRVALIYGDADYICNWFGGEAISL AAKYKHSKQFQKAGYAPFLVDGVEYGETREYGNFSFTRVYESGHEVPYYQPVAALQLFNRTLNGWELTKGEDKVK QNSGSTGPKTATHTQASVPLPTATKASGFGELS* |
| Coding | >Pro_DTO377G3_2|g9145.t1 ATGCGTGTCTCCCACTGGATTCCATTATTACCGGCTGTGGCGGCGCTTGCCGTGCCCTCAGATAGCTTGGAGGGC TTGGAGGCCCTCATCCGTCGCCAGCTGCCCAAGCATCCAACACACGTCAAGACTATCAAGACGGCTAATAATGTC ACCATTCGCTATAAAGAGCCTGGCAAAGAGGGTGTTTGTGAAACTACCCCCGGTGTCAACTCCTATTCGGGTTAT GTGGACCTCTCACCCACAGAGCACACTTTCTTCTGGTTTTTCGAGGCTCGCCATGACCCTGAAAATGCGCCAATC ACCTTGTGGTTAAATGGTGGACCGGGCAGTGACTCTTTGATTGGATTGTTCGAGGAATTGGGTCCGTGTGGTGTC AACAAGAATAATGAATCTTATATCAACAAGAATTCGTGGAATGAGGTCTCGAATTTGCTATTCATCTCTCAGCCA TTGGGTGTTGGTTTCTCCTACGCTGAGAAAGCGGCCGGCACTCTTAACCCTATCACAGGTTCATATGAAGACCCG TCCTTTGCAGGAATTGATGGTCGCTATCCAGTCATCAACGCTACCGCAATTGATACAACTGTACTCGCTGCCAAA GCTACCTGGGAAGTCCTGCAGGGATTCCTGGGTGGTCTGCCCAAGCTGGATTCGAAGATCAAGTCGAAGAGTTTC AATTTGTGGACCGAAAGCTATGGAGGGCATTATGGCCCTGCCTTCTTCGATCACTTCTATGAAGAGAACCTTAAG ATTGCCAACGGCACCCAGCACGGCATTCAACTCGACTTCAACACCTTGGGTATCATCAATGGTATCATCGATGAA GGAATTCAAGCCAGGCACTACCCTGAATTTGCCGTGAACAACACCTATGGGATCAAGGCTGTCAACGAGACAGTT TACAACTACATGAGATTCGCCAACGAAATGCCAAACGGCTGCCAGGACCAAATCGCAACCTGCAAGCTTACAAAC CGCACCTCGCTATCCGACCTCGCACTCTGCACCGAGGCAACCAACATGTGCCGAGATAACGTCGAGAGCCCCTAC TACGTCTTCGGCGAGCGAGGCGCCTATGACATCCGCCACCCGAGCGACGACCCAACCCCAGAAGGCTACTACATA AACTACCTCGCCAAAGACTCGGTCCTGAACGCCCTAGGCGTCGACATAAACTACACGCAATCCAACAACGAAGTC TACTTCGCCTTCCAGCAAACCGGCGACTTCGTCTGGCCCAACTTCCTCGAAGACCTAGAGGATATCCTCTCCCGT CCCGTCCGCGTCGCTCTCATCTACGGCGACGCAGACTACATCTGCAACTGGTTCGGCGGCGAGGCCATCTCCCTC GCGGCGAAGTACAAGCACAGCAAGCAGTTCCAGAAGGCCGGTTATGCGCCCTTCCTCGTCGATGGTGTCGAGTAT GGCGAGACGAGGGAGTATGGTAACTTCTCTTTCACCCGTGTTTATGAGTCTGGTCATGAGGTGCCGTACTATCAG CCGGTGGCTGCGTTGCAGCTGTTTAATCGTACTCTGAATGGGTGGGAATTGACCAAGGGAGAAGACAAGGTGAAG CAGAATTCTGGCTCGACTGGCCCTAAGACGGCGACTCATACCCAGGCTTCGGTACCGTTGCCTACGGCTACAAAG GCTTCTGGGTTTGGTGAGTTGTCGTGA |
| Transcript | >Pro_DTO377G3_2|g9145.t1 ATGCGTGTCTCCCACTGGATTCCATTATTACCGGCTGTGGCGGCGCTTGCCGTGCCCTCAGATAGCTTGGAGGGC TTGGAGGCCCTCATCCGTCGCCAGCTGCCCAAGCATCCAACACACGTCAAGACTATCAAGACGGCTAATAATGTC ACCATTCGCTATAAAGAGCCTGGCAAAGAGGGTGTTTGTGAAACTACCCCCGGTGTCAACTCCTATTCGGGTTAT GTGGACCTCTCACCCACAGAGCACACTTTCTTCTGGTTTTTCGAGGCTCGCCATGACCCTGAAAATGCGCCAATC ACCTTGTGGTTAAATGGTGGACCGGGCAGTGACTCTTTGATTGGATTGTTCGAGGAATTGGGTCCGTGTGGTGTC AACAAGAATAATGAATCTTATATCAACAAGAATTCGTGGAATGAGGTCTCGAATTTGCTATTCATCTCTCAGCCA TTGGGTGTTGGTTTCTCCTACGCTGAGAAAGCGGCCGGCACTCTTAACCCTATCACAGGTTCATATGAAGACCCG TCCTTTGCAGGAATTGATGGTCGCTATCCAGTCATCAACGCTACCGCAATTGATACAACTGTACTCGCTGCCAAA GCTACCTGGGAAGTCCTGCAGGGATTCCTGGGTGGTCTGCCCAAGCTGGATTCGAAGATCAAGTCGAAGAGTTTC AATTTGTGGACCGAAAGCTATGGAGGGCATTATGGCCCTGCCTTCTTCGATCACTTCTATGAAGAGAACCTTAAG ATTGCCAACGGCACCCAGCACGGCATTCAACTCGACTTCAACACCTTGGGTATCATCAATGGTATCATCGATGAA GGAATTCAAGCCAGGCACTACCCTGAATTTGCCGTGAACAACACCTATGGGATCAAGGCTGTCAACGAGACAGTT TACAACTACATGAGATTCGCCAACGAAATGCCAAACGGCTGCCAGGACCAAATCGCAACCTGCAAGCTTACAAAC CGCACCTCGCTATCCGACCTCGCACTCTGCACCGAGGCAACCAACATGTGCCGAGATAACGTCGAGAGCCCCTAC TACGTCTTCGGCGAGCGAGGCGCCTATGACATCCGCCACCCGAGCGACGACCCAACCCCAGAAGGCTACTACATA AACTACCTCGCCAAAGACTCGGTCCTGAACGCCCTAGGCGTCGACATAAACTACACGCAATCCAACAACGAAGTC TACTTCGCCTTCCAGCAAACCGGCGACTTCGTCTGGCCCAACTTCCTCGAAGACCTAGAGGATATCCTCTCCCGT CCCGTCCGCGTCGCTCTCATCTACGGCGACGCAGACTACATCTGCAACTGGTTCGGCGGCGAGGCCATCTCCCTC GCGGCGAAGTACAAGCACAGCAAGCAGTTCCAGAAGGCCGGTTATGCGCCCTTCCTCGTCGATGGTGTCGAGTAT GGCGAGACGAGGGAGTATGGTAACTTCTCTTTCACCCGTGTTTATGAGTCTGGTCATGAGGTGCCGTACTATCAG CCGGTGGCTGCGTTGCAGCTGTTTAATCGTACTCTGAATGGGTGGGAATTGACCAAGGGAGAAGACAAGGTGAAG CAGAATTCTGGCTCGACTGGCCCTAAGACGGCGACTCATACCCAGGCTTCGGTACCGTTGCCTACGGCTACAAAG GCTTCTGGGTTTGGTGAGTTGTCGTGA |
| Gene | >Pro_DTO377G3_2|g9145.t1 ATGCGTGTCTCCCACTGGATTCCATTATTACCGGCTGTGGCGGCGCTTGCCGTGCCCTCAGATAGCTTGGAGGGC TTGGAGGCCCTCATCCGTCGCCAGCTGCCCAAGCATCCAACACACGTCAAGACTATCAAGACGGCTAATAATGTC ACCATTCGCTATAAAGAGCCTGGCAAAGAGGGTGTTTGTGAAACTACCCCCGGTGTCAACTCCTATTCGGGTTAT GTGGACCTCTCACCCACAGAGCACACTTTCTTCTGGTTTTTCGAGGCTCGCCATGACCCTGAAAATGCGCCAATC ACCTTGTGGTTAAATGGTGGACCGGGCAGTGACTCTTTGATTGGATTGTTCGAGGAATTGGGTCCGTGTGGTGTC AACAAGAATAATGAATCTTATATCAACAAGAATTCGTGGAATGAGGTCTCGAATTTGCTATTCATCTCTCAGCCA TTGGGTGTTGGTATGGATATCTTTCTATTCTATTCTCTTTCTAGGTCATCTGGCTAATATAATCACAGGTTTCTC CTACGCTGAGAAAGCGGCCGGCACTCTTAACCCTATCACAGGTTCATATGAAGACCCGTCCTTTGCAGGAATTGA TGGTCGCTATCCAGTCATCAACGCTACCGCAATTGATACAACTGTACTCGCTGCCAAAGCTACCTGGGAAGTCCT GCAGGGATTCCTGGGTGGTCTGCCCAAGCTGGATTCGAAGATCAAGTCGAAGAGTTTCAATTTGTGGACCGAAAG CTATGGAGGGTGAGTTCGTCTGTTCGAGATATTGATATATCCTTGCTGACTTCTTCAAGGCATTATGGCCCTGCC GTGAGTCAACCAGTAGCTCCTATTTTGTTGAAGTTCTAACACTGGCAGTTCTTCGATCACTTCTATGAAGAGAAC CTTAAGATTGCCAACGGCACCCAGCACGGCATTCAACTCGACTTCAACACCTTGGGTATCATCAATGGTATCATC GATGAAGGAATTCAAGCCAGGCACTACCCTGAATTTGCCGTGAACAACACCTATGGGATCAAGGCTGTAAGTCTT CAAAGTTACCATGATACTAATTTCACACTAACAAATAATGCAGGTCAACGAGACAGTTTACAACTACATGAGATT CGCCAACGAAATGCCAAACGGCTGCCAGGACCAAATCGCAACCTGCAAGCTTACAAACCGCACCTCGCTATCCGA CCTCGCACTCTGCACCGAGGCAACCAACATGTGCCGAGATAACGTCGGTATGATATACCCCGACTCCATATAAAA TCTACCCAGAACTGACACAATCCCTAACTCTAGAGAGCCCCTACTACGTCTTCGGCGAGCGAGGCGCCTATGACA TCCGCCACCCGAGCGACGACCCAACCCCAGAAGGCTACTACATAAACTACCTCGCCAAAGACTCGGTCCTGAACG CCCTAGGCGTCGACATAAACTACACGCAATCCAACAACGAAGTCTACTTCGCCTTCCAGCAAACCGGCGACTTCG TCTGGCCCAACTTCCTCGAAGACCTAGAGGATATCCTCTCCCGTCCCGTCCGCGTCGCTCTCATCTACGGCGACG CAGACTACATCTGCAACTGGTTCGGCGGCGAGGCCATCTCCCTCGCGGCGAAGTACAAGCACAGCAAGCAGTTCC AGAAGGCCGGTTATGCGCCCTTCCTCGTCGATGGTGTCGAGTATGGCGAGACGAGGGAGTATGGTAACTTCTCTT TCACCCGTGTTTATGAGTCTGGTCATGAGGTGCCGTACTATCAGCCGGTGGCTGCGTTGCAGCTGTTTAATCGTA CTCTGAATGGGTGGGAATTGACCAAGGGAGAAGACAAGGTGAAGCAGAATTCTGGCTCGACTGGCCCTAAGACGG CGACTCATACCCAGGCTTCGGTACCGTTGCCTACGGCTACAAAGGCTTCTGGGTTTGGTGAGTTGTCGTGA |