Protein ID | Pro_DTO377G3_2|g9139.t1 |
Gene name | |
Location | scaffold_42:69382..72482 |
Strand | - |
Gene length (bp) | 3100 |
Transcript length (bp) | 2793 |
Coding sequence length (bp) | 2793 |
Protein length (aa) | 931 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00933 | Glyco_hydro_3 | Glycosyl hydrolase family 3 N terminal domain | 1.3E-65 | 15 | 341 |
GO Term | Description | Terminal node |
---|---|---|
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
GO:0005975 | carbohydrate metabolic process | Yes |
GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
GO:0008150 | biological_process | No |
GO:0044238 | primary metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0003824 | catalytic activity | No |
GO:0016787 | hydrolase activity | No |
GO:0071704 | organic substance metabolic process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 35 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 35.97 | 21.85 | 50.08 |
5d_25C | Five days - 25 degrees Celsius | 24.69 | 14.72 | 34.66 |
7d_25C | Seven days - 25 degrees Celsius | 23.82 | 14.10 | 33.54 |
10d_25C | Ten days - 25 degrees Celsius | 15.43 | 8.67 | 22.19 |
7d_15C | Seven days - 15 degrees Celsius | 28.23 | 16.99 | 39.47 |
7d_30C | Seven days - 30 degrees Celsius | 19.70 | 11.48 | 27.92 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.083660 | no |
3d_25C | 7d_25C | 0.063161 | no |
3d_25C | 7d_15C | 0.324525 | no |
3d_25C | 7d_30C | 0.004840 | yes |
3d_25C | 10d_25C | 0.000700 | yes |
5d_25C | 7d_25C | 0.918044 | no |
5d_25C | 7d_15C | 0.632252 | no |
5d_25C | 7d_30C | 0.374467 | no |
5d_25C | 10d_25C | 0.037576 | yes |
7d_25C | 7d_15C | 0.529566 | no |
7d_25C | 7d_30C | 0.481809 | no |
7d_25C | 10d_25C | 0.060739 | no |
7d_15C | 7d_30C | 0.112289 | no |
7d_15C | 10d_25C | 0.005235 | yes |
7d_30C | 10d_25C | 0.359339 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g9139.t1 MARKEGMLSPGWEDLDRQMGQLFMMGFDGTEVNPQIRSLIENYHLGTVMLSAKNLKSAEDATRLVLELQTIARDA GHPVPLLIALDQENGGVNSLYDEIYIRQFPSTMGIAATGSKSLAHEVAVATAQELKAVGVNWILGPVLDVLTNVR NQPLGVRTAGDDPQEASQYGVQFMKGYQEAGLVTCGKHFPSYGNLEFLGSPTDVPIITESLEQLSLNALVPFRNA INQGLDAMIVGGVSLSSAGMNVMHACLSDQVVNELLRKDLQFQGVVVSECLEMEALTHNIGVGGGTVMAKNAGCD VMLLCRSFPVQQEAINGLKLGVENGIISRQRVEQSLRRVLDLKARCTSWEQALNPPGLSSLTQMQPSHTNLSTRA YNSSITVMRDKNNLLPLSNVIEPDEELLLLTPLVKPLPTSAVSLSVAESARGSLDPLCSERTSSILSGEGVFKEL GRSLSRQRNGRVLHTSYTSNGVRPIHDDLIQRASAVVVVTADANRNLYQQGFSKHVAMICQSQYTPSGERRAKPL IVVAVSSPYDFAMDSSIGTYICTYDFTETALQALVKVLYGDLTPSAALPGSIGRTQKIHQSRQHWLVENWNEDRD SFALDALLDTIRVDCTLGQPSELLGATASSFLLRKEDIDEAHFVVRNSSTHALYGFCATYFFRSTGTGVIACLIV DPSRRKLSIGHSLHSRAIRTLLQRTGMKRFQLGSRLPGIYLGIPTVNPVERKRLRQWFANMGWNTALSRPVCSVI MRNLSTWVPPEGLTATLQNAEVTYDLVYGWDFAPAILDHIKTYARQGVADIYRMALGGAPNCGIIRAKRPSDGVI LGSIVIYNERSALAEHMPVLRATQASVGGISSPVISPCGEHYSTVMQGLVLLAIKQIRKLSADAVVMDCVDGDGN FDNLSMMGFTMLHSFEEVNCDAASWTMMHA* |
Coding | >Pro_DTO377G3_2|g9139.t1 ATGGCCCGGAAAGAGGGCATGCTGTCCCCGGGCTGGGAGGACCTAGATAGACAGATGGGTCAGCTCTTTATGATG GGCTTTGATGGGACTGAGGTCAATCCACAGATTCGATCACTCATTGAGAATTACCACTTGGGTACCGTGATGCTA TCTGCTAAAAACCTGAAATCGGCCGAGGATGCAACTAGATTGGTTCTGGAATTACAGACCATTGCGCGTGATGCA GGCCATCCTGTTCCGTTACTAATTGCCTTGGATCAGGAGAATGGTGGCGTCAACAGTTTGTATGATGAGATCTAT ATCCGCCAATTCCCTAGTACCATGGGCATTGCAGCTACTGGGTCCAAGTCATTAGCGCACGAGGTGGCTGTCGCG ACAGCACAGGAGCTCAAGGCCGTTGGGGTCAATTGGATATTGGGCCCCGTTTTGGATGTTTTGACCAATGTGCGA AATCAACCATTAGGCGTTCGTACCGCTGGCGACGATCCCCAAGAGGCGTCTCAATATGGTGTCCAGTTCATGAAA GGGTATCAAGAAGCAGGTTTAGTAACTTGTGGAAAACACTTTCCGTCCTATGGTAATTTGGAATTTCTCGGCTCC CCGACGGATGTTCCAATTATTACGGAATCCCTAGAGCAACTCAGTCTCAACGCGCTTGTGCCCTTTCGCAACGCT ATCAACCAGGGCCTGGATGCCATGATAGTGGGAGGTGTCTCATTGTCATCGGCTGGGATGAACGTGATGCACGCG TGCCTGAGTGATCAGGTGGTTAACGAGCTATTGAGAAAGGATCTCCAGTTTCAAGGGGTGGTCGTTTCCGAATGC TTGGAGATGGAGGCGCTCACACATAACATTGGAGTAGGAGGTGGCACAGTGATGGCGAAGAACGCCGGCTGCGAC GTCATGCTTTTATGTCGGTCATTCCCCGTCCAACAGGAAGCTATCAACGGGTTGAAACTCGGCGTGGAGAACGGT ATCATCAGCCGTCAGCGGGTTGAACAATCGTTGCGCCGCGTTTTGGATTTGAAGGCGCGGTGTACTTCGTGGGAA CAGGCACTGAACCCTCCGGGGCTTTCTTCACTTACGCAGATGCAACCCTCGCATACCAACCTTTCCACCCGAGCC TACAACTCTTCCATCACAGTGATGAGAGATAAGAATAATTTACTTCCATTGTCCAATGTCATCGAGCCAGACGAA GAACTTTTGCTTCTGACGCCGCTGGTCAAGCCCCTCCCAACATCAGCGGTTTCTCTCTCGGTCGCAGAGTCTGCG CGTGGGTCACTGGATCCATTATGCTCGGAACGAACCTCCTCGATTCTGAGTGGAGAGGGGGTCTTCAAAGAACTT GGACGATCACTCTCGCGGCAGAGGAACGGGCGCGTGTTGCACACCTCCTATACTTCCAATGGCGTGCGTCCCATC CACGACGACCTCATTCAAAGAGCGAGTGCTGTAGTAGTTGTCACGGCCGATGCCAATCGCAATCTCTACCAGCAA GGGTTCTCAAAACACGTCGCCATGATCTGCCAATCGCAGTATACCCCATCTGGCGAACGTCGCGCGAAACCATTG ATTGTGGTGGCAGTTAGCTCGCCATATGATTTTGCCATGGATTCCTCAATTGGTACTTACATATGCACGTATGAC TTCACGGAAACTGCCCTCCAGGCATTGGTCAAGGTCTTGTATGGCGACTTGACACCTTCAGCGGCCCTGCCTGGC TCCATTGGGCGAACGCAGAAGATTCATCAGTCTCGACAGCACTGGCTTGTCGAGAATTGGAACGAGGATCGCGAC TCTTTCGCGCTGGATGCCCTGCTCGACACTATCCGTGTCGACTGTACACTAGGCCAGCCGTCAGAACTTCTTGGA GCTACCGCTAGCAGCTTCTTGCTCCGGAAGGAGGATATCGACGAAGCCCATTTTGTTGTCCGGAACAGTAGCACG CATGCCCTCTACGGGTTCTGCGCGACCTACTTCTTTCGATCCACGGGCACCGGTGTGATTGCATGTCTGATCGTA GACCCATCTCGAAGGAAACTCTCAATCGGACATTCCCTTCACAGCCGCGCGATTCGGACTCTGCTCCAGCGGACC GGCATGAAACGCTTCCAGCTAGGATCCCGATTACCAGGGATCTACCTTGGCATCCCGACCGTCAACCCTGTGGAG CGCAAGCGGCTGCGGCAGTGGTTCGCGAACATGGGGTGGAACACGGCGCTTTCGCGACCAGTGTGCAGCGTGATC ATGCGCAACCTGTCGACATGGGTGCCGCCCGAGGGGCTCACGGCGACTCTGCAGAATGCCGAGGTCACATACGAT CTCGTATATGGCTGGGACTTTGCGCCCGCGATTCTCGACCACATCAAAACGTATGCGCGGCAGGGCGTGGCCGAC ATCTACCGCATGGCTCTGGGCGGGGCGCCTAATTGCGGGATCATCCGGGCCAAGCGGCCCTCCGACGGGGTTATA CTCGGGAGTATCGTGATTTACAATGAGCGATCCGCTTTGGCGGAGCACATGCCCGTGTTGCGCGCCACCCAGGCT TCCGTCGGAGGCATTTCGTCTCCGGTGATTTCTCCTTGTGGCGAACATTACTCTACGGTAATGCAGGGCCTGGTC CTGCTAGCTATCAAGCAGATCCGGAAGCTGAGTGCCGATGCCGTGGTTATGGACTGTGTCGATGGTGACGGCAAC TTCGACAATCTCTCGATGATGGGCTTCACTATGCTACATAGTTTTGAGGAAGTGAACTGTGACGCCGCTTCGTGG ACGATGATGCACGCGTAG |
Transcript | >Pro_DTO377G3_2|g9139.t1 ATGGCCCGGAAAGAGGGCATGCTGTCCCCGGGCTGGGAGGACCTAGATAGACAGATGGGTCAGCTCTTTATGATG GGCTTTGATGGGACTGAGGTCAATCCACAGATTCGATCACTCATTGAGAATTACCACTTGGGTACCGTGATGCTA TCTGCTAAAAACCTGAAATCGGCCGAGGATGCAACTAGATTGGTTCTGGAATTACAGACCATTGCGCGTGATGCA GGCCATCCTGTTCCGTTACTAATTGCCTTGGATCAGGAGAATGGTGGCGTCAACAGTTTGTATGATGAGATCTAT ATCCGCCAATTCCCTAGTACCATGGGCATTGCAGCTACTGGGTCCAAGTCATTAGCGCACGAGGTGGCTGTCGCG ACAGCACAGGAGCTCAAGGCCGTTGGGGTCAATTGGATATTGGGCCCCGTTTTGGATGTTTTGACCAATGTGCGA AATCAACCATTAGGCGTTCGTACCGCTGGCGACGATCCCCAAGAGGCGTCTCAATATGGTGTCCAGTTCATGAAA GGGTATCAAGAAGCAGGTTTAGTAACTTGTGGAAAACACTTTCCGTCCTATGGTAATTTGGAATTTCTCGGCTCC CCGACGGATGTTCCAATTATTACGGAATCCCTAGAGCAACTCAGTCTCAACGCGCTTGTGCCCTTTCGCAACGCT ATCAACCAGGGCCTGGATGCCATGATAGTGGGAGGTGTCTCATTGTCATCGGCTGGGATGAACGTGATGCACGCG TGCCTGAGTGATCAGGTGGTTAACGAGCTATTGAGAAAGGATCTCCAGTTTCAAGGGGTGGTCGTTTCCGAATGC TTGGAGATGGAGGCGCTCACACATAACATTGGAGTAGGAGGTGGCACAGTGATGGCGAAGAACGCCGGCTGCGAC GTCATGCTTTTATGTCGGTCATTCCCCGTCCAACAGGAAGCTATCAACGGGTTGAAACTCGGCGTGGAGAACGGT ATCATCAGCCGTCAGCGGGTTGAACAATCGTTGCGCCGCGTTTTGGATTTGAAGGCGCGGTGTACTTCGTGGGAA CAGGCACTGAACCCTCCGGGGCTTTCTTCACTTACGCAGATGCAACCCTCGCATACCAACCTTTCCACCCGAGCC TACAACTCTTCCATCACAGTGATGAGAGATAAGAATAATTTACTTCCATTGTCCAATGTCATCGAGCCAGACGAA GAACTTTTGCTTCTGACGCCGCTGGTCAAGCCCCTCCCAACATCAGCGGTTTCTCTCTCGGTCGCAGAGTCTGCG CGTGGGTCACTGGATCCATTATGCTCGGAACGAACCTCCTCGATTCTGAGTGGAGAGGGGGTCTTCAAAGAACTT GGACGATCACTCTCGCGGCAGAGGAACGGGCGCGTGTTGCACACCTCCTATACTTCCAATGGCGTGCGTCCCATC CACGACGACCTCATTCAAAGAGCGAGTGCTGTAGTAGTTGTCACGGCCGATGCCAATCGCAATCTCTACCAGCAA GGGTTCTCAAAACACGTCGCCATGATCTGCCAATCGCAGTATACCCCATCTGGCGAACGTCGCGCGAAACCATTG ATTGTGGTGGCAGTTAGCTCGCCATATGATTTTGCCATGGATTCCTCAATTGGTACTTACATATGCACGTATGAC TTCACGGAAACTGCCCTCCAGGCATTGGTCAAGGTCTTGTATGGCGACTTGACACCTTCAGCGGCCCTGCCTGGC TCCATTGGGCGAACGCAGAAGATTCATCAGTCTCGACAGCACTGGCTTGTCGAGAATTGGAACGAGGATCGCGAC TCTTTCGCGCTGGATGCCCTGCTCGACACTATCCGTGTCGACTGTACACTAGGCCAGCCGTCAGAACTTCTTGGA GCTACCGCTAGCAGCTTCTTGCTCCGGAAGGAGGATATCGACGAAGCCCATTTTGTTGTCCGGAACAGTAGCACG CATGCCCTCTACGGGTTCTGCGCGACCTACTTCTTTCGATCCACGGGCACCGGTGTGATTGCATGTCTGATCGTA GACCCATCTCGAAGGAAACTCTCAATCGGACATTCCCTTCACAGCCGCGCGATTCGGACTCTGCTCCAGCGGACC GGCATGAAACGCTTCCAGCTAGGATCCCGATTACCAGGGATCTACCTTGGCATCCCGACCGTCAACCCTGTGGAG CGCAAGCGGCTGCGGCAGTGGTTCGCGAACATGGGGTGGAACACGGCGCTTTCGCGACCAGTGTGCAGCGTGATC ATGCGCAACCTGTCGACATGGGTGCCGCCCGAGGGGCTCACGGCGACTCTGCAGAATGCCGAGGTCACATACGAT CTCGTATATGGCTGGGACTTTGCGCCCGCGATTCTCGACCACATCAAAACGTATGCGCGGCAGGGCGTGGCCGAC ATCTACCGCATGGCTCTGGGCGGGGCGCCTAATTGCGGGATCATCCGGGCCAAGCGGCCCTCCGACGGGGTTATA CTCGGGAGTATCGTGATTTACAATGAGCGATCCGCTTTGGCGGAGCACATGCCCGTGTTGCGCGCCACCCAGGCT TCCGTCGGAGGCATTTCGTCTCCGGTGATTTCTCCTTGTGGCGAACATTACTCTACGGTAATGCAGGGCCTGGTC CTGCTAGCTATCAAGCAGATCCGGAAGCTGAGTGCCGATGCCGTGGTTATGGACTGTGTCGATGGTGACGGCAAC TTCGACAATCTCTCGATGATGGGCTTCACTATGCTACATAGTTTTGAGGAAGTGAACTGTGACGCCGCTTCGTGG ACGATGATGCACGCGTAG |
Gene | >Pro_DTO377G3_2|g9139.t1 ATGGCCCGGAAAGAGGGCATGCTGTCCCCGGGCTGGGAGGACCTAGATAGGTATGTCGATCTACTGTTTTCGCTT GGCTCGTCCCCTATTGGCGTTAACCCTCGCCCCATTCCTCCCCCCCCTAAAATCTGCCTGTTGGGGTATCTCCCT TCAATGTGGAACCTAACTGTCAATCTGGAGAGCGTCATGTAGACTATTTCCACTTTAGGAAATTTGACACCGGAG TACGCTGACATGGCACAGACAGATGGGTCAGCTCTTTATGATGGGCTTTGATGGGACTGAGGTCAATCCACAGAT TCGATCACTCATTGAGAATTACCACTTGGGTACCGTGATGCTATCTGCTAAAAACCTGAAATGTATCTTTAAAAA GGCCCTTTGTCACTAGCTACTTAGACAGTCACTGACACGTTTACAGCGGCCGAGGATGCAACTAGATTGGTTCTG GAATTACAGACCATTGCGCGTGATGCAGGCCATCCTGTTCCGTTACTAATTGCCTTGGATCAGGAGAATGGTGGC GTCAACAGTTTGTATGATGAGATCTATATCCGCCAATTCCCTAGTACCATGGGCATTGCAGCTACTGGGTCCAAG TCATTAGCGCACGAGGTGGCTGTCGCGACAGCACAGGAGCTCAAGGCCGTTGGGGTCAATTGGATATTGGGCCCC GTTTTGGATGTTTTGACCAATGTGCGAAATCAACCATTAGGCGTTCGTACCGCTGGCGACGATCCCCAAGAGGCG TCTCAATATGGTGTCCAGTTCATGAAAGGGTATCAAGAAGCAGGTTTAGTAACTTGTGGAAAACACTTTCCGTCC TATGGTAATTTGGAATTTCTCGGCTCCCCGACGGATGTTCCAATTATTACGGAATCCCTAGAGCAACTCAGTCTC AACGCGCTTGTGCCCTTTCGCAACGCTATCAACCAGGGCCTGGATGCCATGATAGTGGGAGGTGTCTCATTGTCA TCGGCTGGGATGAACGTGATGCACGCGTGCCTGAGTGATCAGGTGGTTAACGAGCTATTGAGAAAGGATCTCCAG TTTCAAGGGGTGGTCGTTTCCGAATGCTTGGAGATGGAGGCGCTCACACATAACATTGGAGTAGGAGGTGGCACA GTGATGGCGAAGAACGCCGGCTGCGACGTCATGCTTTTATGTCGGTCATTCCCCGTCCAACAGGAAGCTATCAAC GGGTTGAAACTCGGCGTGGAGAACGGTATCATCAGCCGTCAGCGGGTTGAACAATCGTTGCGCCGCGTTTTGGAT TTGAAGGCGCGGTGTACTTCGTGGGAACAGGCACTGAACCCTCCGGGGCTTTCTTCACTTACGCAGATGCAACCC TCGCATACCAACCTTTCCACCCGAGCCTACAACTCTTCCATCACAGTGATGAGAGATAAGAATAATTTACTTCCA TTGTCCAATGTCATCGAGCCAGACGAAGAACTTTTGCTTCTGACGCCGCTGGTCAAGCCCCTCCCAACATCAGCG GTTTCTCTCTCGGTCGCAGAGTCTGCGCGTGGGTCACTGGATCCATTATGCTCGGAACGAACCTCCTCGATTCTG AGTGGAGAGGGGGTCTTCAAAGAACTTGGACGATCACTCTCGCGGCAGAGGAACGGGCGCGTGTTGCACACCTCC TATACTTCCAATGGCGTGCGTCCCATCCACGACGACCTCATTCAAAGAGCGAGTGCTGTAGTAGTTGTCACGGCC GATGCCAATCGCAATCTCTACCAGCAAGGGTTCTCAAAACACGTCGCCATGATCTGCCAATCGCAGTATACCCCA TCTGGCGAACGTCGCGCGAAACCATTGATTGTGGTGGCAGTTAGCTCGCCATATGATTTTGCCATGGATTCCTCA ATTGGTACTTACATATGCACGTATGACTTCACGGAAACTGCCCTCCAGGCATTGGTCAAGGTCTTGTATGGCGAC TTGACACCTTCAGCGGCCCTGCCTGGCTCCATTGGGCGAACGCAGAAGATTCATCAGTCTCGACAGCACTGGCTT GTCGAGAATTGGAACGAGGATCGCGACTCTTTCGCGCTGGATGCCCTGCTCGACACTATCCGTGTCGACTGTACA CTAGGCCAGCCGTCAGAACTTCTTGGAGCTACCGCTAGCAGCTTCTTGCTCCGGAAGGAGGATATCGACGAAGCC CATTTTGTTGTCCGGAACAGTAGCACGCATGCCCTCTACGGGTTCTGCGCGACCTACTTCTTTCGATCCACGGGC ACCGGTGTGATTGCATGTCTGATCGTAGACCCATCTCGAAGGAAACTCTCAATCGGACATTCCCTTCACAGCCGC GCGATTCGGACTCTGCTCCAGCGGACCGGCATGAAACGCTTCCAGCTAGGATCCCGATTACCAGGGATCTACCTT GGCATCCCGACCGTCAACCCTGTGGAGCGCAAGCGGCTGCGGCAGTGGTTCGCGAACATGGGGTGGAACACGGCG CTTTCGCGACCAGTGTGCAGCGTGATCATGCGCAACCTGTCGACATGGGTGCCGCCCGAGGGGCTCACGGCGACT CTGCAGAATGCCGAGGTCACATACGATCTCGTATATGGCTGGGACTTTGCGCCCGCGATTCTCGACCACATCAAA ACGTATGCGCGGCAGGGCGTGGCCGACATCTACCGCATGGCTCTGGGCGGGGCGCCTAATTGCGGGATCATCCGG GCCAAGCGGCCCTCCGACGGGGTTATACTCGGGAGTATCGTGATTTACAATGAGCGATCCGCTTTGGCGGAGCAC ATGCCCGTGTTGCGCGCCACCCAGGCTTCCGTCGGAGGCATTTCGTCTCCGGTGATTTCTCCTTGTGGCGAACAT TACTCTACGGTAATGCAGGGCCTGGTCCTGCTAGCTATCAAGCAGATCCGGAAGCTGAGTGCCGATGCCGTGGTT ATGGACTGTGTATGTTTTTTTGGGCTTGTTCCTTTTCCCCGGTTATCTTCTAACACTGGAATAGGTCGATGGTGA CGGCAACTTCGACAATCTCTCGATGATGGGCTTCACTATGCTACATAGTTTTGAGGAAGTGAACTGTGACGCCGC TTCGTGGACGATGATGCACGCGTAG |