Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9122.t1
Gene name
Locationscaffold_42:29078..29816
Strand+
Gene length (bp)738
Transcript length (bp)522
Coding sequence length (bp)522
Protein length (aa) 174

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 5.8E-49 12 171

GO

GO Term Description Terminal node
GO:0000413 protein peptidyl-prolyl isomerization Yes
GO:0003755 peptidyl-prolyl cis-trans isomerase activity Yes
GO:0003674 molecular_function No
GO:0043170 macromolecule metabolic process No
GO:0140096 catalytic activity, acting on a protein No
GO:0019538 protein metabolic process No
GO:0008150 biological_process No
GO:0036211 protein modification process No
GO:0071704 organic substance metabolic process No
GO:0008152 metabolic process No
GO:0018208 peptidyl-proline modification No
GO:0003824 catalytic activity No
GO:0043412 macromolecule modification No
GO:0006807 nitrogen compound metabolic process No
GO:0016853 isomerase activity No
GO:0018193 peptidyl-amino acid modification No
GO:0016859 cis-trans isomerase activity No
GO:1901564 organonitrogen compound metabolic process No
GO:0044238 primary metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 70.29 35.15 105.43
5d_25C Five days - 25 degrees Celsius 60.10 28.86 91.34
7d_25C Seven days - 25 degrees Celsius 58.16 27.58 88.74
10d_25C Ten days - 25 degrees Celsius 40.20 16.89 63.50
7d_15C Seven days - 15 degrees Celsius 71.02 35.44 106.60
7d_30C Seven days - 30 degrees Celsius 41.92 18.13 65.70

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.662618 no
3d_25C 7d_25C 0.578993 no
3d_25C 7d_15C 0.981280 no
3d_25C 7d_30C 0.074740 no
3d_25C 10d_25C 0.061471 no
5d_25C 7d_25C 0.940295 no
5d_25C 7d_15C 0.637566 no
5d_25C 7d_30C 0.248951 no
5d_25C 10d_25C 0.208277 no
7d_25C 7d_15C 0.554074 no
7d_25C 7d_30C 0.309081 no
7d_25C 10d_25C 0.258334 no
7d_15C 7d_30C 0.066479 no
7d_15C 10d_25C 0.054965 no
7d_30C 10d_25C 0.932331 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9122.t1
MAEPNPVVFFDIALGGESLGRVKMELFANVTPRTAENFRQFCTGESKNPKGQPQGYKGSKFHRVIKDFMIQGGDF
INGDGTGSCTIYGTSKFADENFTLTHDRAGLLSMANSGPDTNGCQFFITTTATPFLNNKHVVFGQVIDGIDIVKM
LEHTRTTKDKPNQDVTIVQCGEM*
Coding >Pro_DTO377G3_2|g9122.t1
ATGGCTGAACCCAATCCAGTGGTTTTCTTTGATATTGCCCTTGGAGGCGAGTCTCTAGGTCGAGTGAAAATGGAG
TTGTTCGCCAATGTCACTCCACGAACTGCGGAGAATTTCCGCCAATTCTGCACCGGCGAGAGCAAAAACCCCAAG
GGACAGCCTCAGGGCTACAAGGGAAGCAAATTTCACCGAGTGATCAAAGACTTCATGATCCAGGGTGGAGATTTC
ATCAATGGCGATGGGACTGGGTCATGTACTATCTATGGCACCTCGAAATTTGCCGATGAAAATTTCACTCTCACA
CATGACCGTGCCGGGTTATTAAGTATGGCTAATTCGGGCCCAGACACCAATGGTTGCCAATTCTTTATAACAACC
ACAGCCACACCATTCTTGAACAACAAGCATGTGGTCTTCGGCCAGGTGATTGATGGGATAGATATCGTTAAAATG
CTTGAACACACCCGTACCACCAAAGACAAGCCCAACCAAGACGTGACGATTGTGCAATGTGGAGAGATGTAA
Transcript >Pro_DTO377G3_2|g9122.t1
ATGGCTGAACCCAATCCAGTGGTTTTCTTTGATATTGCCCTTGGAGGCGAGTCTCTAGGTCGAGTGAAAATGGAG
TTGTTCGCCAATGTCACTCCACGAACTGCGGAGAATTTCCGCCAATTCTGCACCGGCGAGAGCAAAAACCCCAAG
GGACAGCCTCAGGGCTACAAGGGAAGCAAATTTCACCGAGTGATCAAAGACTTCATGATCCAGGGTGGAGATTTC
ATCAATGGCGATGGGACTGGGTCATGTACTATCTATGGCACCTCGAAATTTGCCGATGAAAATTTCACTCTCACA
CATGACCGTGCCGGGTTATTAAGTATGGCTAATTCGGGCCCAGACACCAATGGTTGCCAATTCTTTATAACAACC
ACAGCCACACCATTCTTGAACAACAAGCATGTGGTCTTCGGCCAGGTGATTGATGGGATAGATATCGTTAAAATG
CTTGAACACACCCGTACCACCAAAGACAAGCCCAACCAAGACGTGACGATTGTGCAATGTGGAGAGATGTAA
Gene >Pro_DTO377G3_2|g9122.t1
ATGGCTGAACCCAATCCAGTGGTTTTCTTTGATATTGCCCTTGGAGGTAAGTCAATTTAGTTATTTTCATGTCGG
CTCTAGTGTGCGGCATCGGAGTACATAGTCTGGCATGGCGAACTCTGCTAAGTAATATAATCCATACAGGCGAGT
CTCTAGGTCGAGTGAAAATGGAGTTGTTCGCCAATGTCACTCCACGAACTGCGGAGAATTTCCGCCAATTCTGCA
CCGGCGAGAGCAAAAACCCCAAGGGACAGCCTCAGGGCTACAAGGGAAGCAAATTTCACCGAGTGGTATGTGATG
AAGATCCTTGGATGGCGATGCGGAATTAATGCTCATTGTAGATCAAAGACTTCATGATCCAGGGTGGAGATTTCA
TCAATGGCGATGGGACTGGGTCATGTACTATCTATGGCACCTCGAAATTTGCCGATGAAAATTTCACTCTCACAC
ATGACCGTGCCGGGTTATTAAGTATGGCTGTAAGTCTGAATCTCGAGACCGAGGGGGATGTTTACCCCGAAAGGA
TCTTTTTACTAATACCAGCAGAATTCGGGCCCAGACACCAATGGTTGCCAATTCTTTATAACAACCACAGCCACA
CCATTCTTGAACAACAAGCATGTGGTCTTCGGCCAGGTGATTGATGGGATAGATATCGTTAAAATGCTTGAACAC
ACCCGTACCACCAAAGACAAGCCCAACCAAGACGTGACGATTGTGCAATGTGGAGAGATGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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