Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9121.t1
Gene name
Locationscaffold_42:26641..28044
Strand-
Gene length (bp)1403
Transcript length (bp)1320
Coding sequence length (bp)1320
Protein length (aa) 440

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13639 zf-RING_2 Ring finger domain 8.1E-12 249 293
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 2.1E-08 251 292
PF17123 zf-RING_11 RING-like zinc finger 2.8E-08 251 278
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 8.3E-08 251 292

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0043169 cation binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 34 56 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9121.t1
MSSTPTSASSSAAATTTASSDGEGSSSNNATSSPLLFFVALGFGVVFTNLWIIVGVKYCFRYNQRNRQLRSEEVG
EPIDLVTMPRTHRRRREKRLMTMDEVNGRFPLVKYKVWRSSRANQGLSTEGGITAPNSRPQSLKDESDIVTKAVG
VHTAAISPSTKGHVRVDSVDTLPPPIQEVQDGPLVQTSEKGPAVSSKPSNRQSTGAGIQKEKWQHSLTNENMTTD
IGEHDEGAYIGNAVTADLLPNPGDSCAICLDIIEDDDDIRGLTCGHAFHASCVDPWLTSRRACCPLCKADYYVPK
PRAQTEAQSVTDRQGRRTASNHPDAILRPPRVAWNGGRASGFRGQMGLPSRIFQSTSPEERSVSPNREQHVQSRR
DQPWDPPHASGSSGQSTWSRLIPTRLRQLSFHFPSSRRPPLVGASVDPLPSERRTPRQVEAGTT*
Coding >Pro_DTO377G3_2|g9121.t1
ATGTCTTCAACGCCAACATCAGCCTCTAGTAGTGCTGCTGCCACCACCACTGCTAGTAGCGACGGAGAGGGTTCG
AGTTCGAATAATGCTACAAGCTCACCTTTATTGTTCTTCGTCGCTCTTGGGTTTGGTGTTGTGTTTACAAATCTA
TGGATCATTGTTGGAGTCAAATACTGCTTTCGATATAACCAACGAAATCGTCAACTCCGCAGTGAAGAAGTAGGA
GAGCCCATAGACTTGGTCACCATGCCACGAACTCATCGCAGGCGAAGGGAAAAAAGGCTAATGACGATGGATGAA
GTCAACGGGCGGTTCCCACTTGTCAAGTACAAAGTGTGGAGATCATCTCGCGCCAACCAGGGCCTTTCAACAGAA
GGAGGTATCACAGCCCCAAATAGCAGGCCACAGAGCCTAAAGGATGAAAGTGATATCGTGACAAAGGCGGTTGGG
GTTCACACGGCTGCAATATCACCGTCTACCAAGGGCCATGTACGGGTGGATTCCGTTGATACCTTACCACCCCCC
ATTCAAGAGGTACAAGATGGCCCTCTGGTGCAGACTTCGGAGAAGGGCCCTGCAGTATCTTCAAAGCCTTCCAAC
CGGCAGTCCACTGGTGCAGGTATACAGAAAGAGAAATGGCAGCATTCCTTGACCAATGAAAACATGACCACGGAT
ATTGGGGAACATGATGAAGGTGCCTACATTGGTAATGCTGTTACTGCTGATCTTCTGCCCAACCCTGGCGATTCT
TGTGCGATTTGCCTAGATATCATTGAGGACGATGATGATATCCGGGGACTTACTTGTGGCCATGCTTTCCATGCT
TCATGCGTCGACCCCTGGCTTACTAGCAGAAGGGCATGTTGCCCTCTATGCAAGGCCGATTACTATGTCCCCAAA
CCCCGTGCACAGACCGAAGCACAGTCTGTCACAGATCGTCAGGGTCGTCGTACAGCCTCGAACCACCCGGATGCA
ATCCTCAGACCCCCTCGAGTTGCTTGGAATGGTGGCAGGGCAAGCGGATTCAGAGGCCAGATGGGCTTGCCTAGC
CGAATATTCCAATCGACATCTCCAGAGGAAAGAAGCGTATCTCCAAACCGAGAACAGCATGTACAGAGTAGGCGT
GATCAGCCTTGGGACCCACCCCATGCCTCGGGTTCATCGGGTCAATCCACCTGGTCTCGATTGATTCCTACTCGA
CTCCGCCAACTTTCCTTCCATTTTCCCTCCTCAAGAAGACCACCTCTAGTTGGGGCTTCTGTGGATCCACTGCCT
TCGGAAAGACGCACACCTCGTCAAGTCGAAGCTGGTACCACATGA
Transcript >Pro_DTO377G3_2|g9121.t1
ATGTCTTCAACGCCAACATCAGCCTCTAGTAGTGCTGCTGCCACCACCACTGCTAGTAGCGACGGAGAGGGTTCG
AGTTCGAATAATGCTACAAGCTCACCTTTATTGTTCTTCGTCGCTCTTGGGTTTGGTGTTGTGTTTACAAATCTA
TGGATCATTGTTGGAGTCAAATACTGCTTTCGATATAACCAACGAAATCGTCAACTCCGCAGTGAAGAAGTAGGA
GAGCCCATAGACTTGGTCACCATGCCACGAACTCATCGCAGGCGAAGGGAAAAAAGGCTAATGACGATGGATGAA
GTCAACGGGCGGTTCCCACTTGTCAAGTACAAAGTGTGGAGATCATCTCGCGCCAACCAGGGCCTTTCAACAGAA
GGAGGTATCACAGCCCCAAATAGCAGGCCACAGAGCCTAAAGGATGAAAGTGATATCGTGACAAAGGCGGTTGGG
GTTCACACGGCTGCAATATCACCGTCTACCAAGGGCCATGTACGGGTGGATTCCGTTGATACCTTACCACCCCCC
ATTCAAGAGGTACAAGATGGCCCTCTGGTGCAGACTTCGGAGAAGGGCCCTGCAGTATCTTCAAAGCCTTCCAAC
CGGCAGTCCACTGGTGCAGGTATACAGAAAGAGAAATGGCAGCATTCCTTGACCAATGAAAACATGACCACGGAT
ATTGGGGAACATGATGAAGGTGCCTACATTGGTAATGCTGTTACTGCTGATCTTCTGCCCAACCCTGGCGATTCT
TGTGCGATTTGCCTAGATATCATTGAGGACGATGATGATATCCGGGGACTTACTTGTGGCCATGCTTTCCATGCT
TCATGCGTCGACCCCTGGCTTACTAGCAGAAGGGCATGTTGCCCTCTATGCAAGGCCGATTACTATGTCCCCAAA
CCCCGTGCACAGACCGAAGCACAGTCTGTCACAGATCGTCAGGGTCGTCGTACAGCCTCGAACCACCCGGATGCA
ATCCTCAGACCCCCTCGAGTTGCTTGGAATGGTGGCAGGGCAAGCGGATTCAGAGGCCAGATGGGCTTGCCTAGC
CGAATATTCCAATCGACATCTCCAGAGGAAAGAAGCGTATCTCCAAACCGAGAACAGCATGTACAGAGTAGGCGT
GATCAGCCTTGGGACCCACCCCATGCCTCGGGTTCATCGGGTCAATCCACCTGGTCTCGATTGATTCCTACTCGA
CTCCGCCAACTTTCCTTCCATTTTCCCTCCTCAAGAAGACCACCTCTAGTTGGGGCTTCTGTGGATCCACTGCCT
TCGGAAAGACGCACACCTCGTCAAGTCGAAGCTGGTACCACATGA
Gene >Pro_DTO377G3_2|g9121.t1
ATGTCTTCAACGCCAACATCAGCCTCTAGTAGTGCTGCTGCCACCACCACTGCTAGTAGCGACGGAGAGGGTTCG
AGTTCGAATAATGCTACAAGCTCACCTTTATTGTTCTTCGTCGCTCTTGGGTTTGGTGTTGTGTTTACAAATCTA
TGGTACGTTGCTTCATATACCCCCTGCCCAGGCCAACAGGCCAGCCTCCCAGTGTTTCAGGGATGGCATCTGACG
GTCATCGCAGGATCATTGTTGGAGTCAAATACTGCTTTCGATATAACCAACGAAATCGTCAACTCCGCAGTGAAG
AAGTAGGAGAGCCCATAGACTTGGTCACCATGCCACGAACTCATCGCAGGCGAAGGGAAAAAAGGCTAATGACGA
TGGATGAAGTCAACGGGCGGTTCCCACTTGTCAAGTACAAAGTGTGGAGATCATCTCGCGCCAACCAGGGCCTTT
CAACAGAAGGAGGTATCACAGCCCCAAATAGCAGGCCACAGAGCCTAAAGGATGAAAGTGATATCGTGACAAAGG
CGGTTGGGGTTCACACGGCTGCAATATCACCGTCTACCAAGGGCCATGTACGGGTGGATTCCGTTGATACCTTAC
CACCCCCCATTCAAGAGGTACAAGATGGCCCTCTGGTGCAGACTTCGGAGAAGGGCCCTGCAGTATCTTCAAAGC
CTTCCAACCGGCAGTCCACTGGTGCAGGTATACAGAAAGAGAAATGGCAGCATTCCTTGACCAATGAAAACATGA
CCACGGATATTGGGGAACATGATGAAGGTGCCTACATTGGTAATGCTGTTACTGCTGATCTTCTGCCCAACCCTG
GCGATTCTTGTGCGATTTGCCTAGATATCATTGAGGACGATGATGATATCCGGGGACTTACTTGTGGCCATGCTT
TCCATGCTTCATGCGTCGACCCCTGGCTTACTAGCAGAAGGGCATGTTGCCCTCTATGCAAGGCCGATTACTATG
TCCCCAAACCCCGTGCACAGACCGAAGCACAGTCTGTCACAGATCGTCAGGGTCGTCGTACAGCCTCGAACCACC
CGGATGCAATCCTCAGACCCCCTCGAGTTGCTTGGAATGGTGGCAGGGCAAGCGGATTCAGAGGCCAGATGGGCT
TGCCTAGCCGAATATTCCAATCGACATCTCCAGAGGAAAGAAGCGTATCTCCAAACCGAGAACAGCATGTACAGA
GTAGGCGTGATCAGCCTTGGGACCCACCCCATGCCTCGGGTTCATCGGGTCAATCCACCTGGTCTCGATTGATTC
CTACTCGACTCCGCCAACTTTCCTTCCATTTTCCCTCCTCAAGAAGACCACCTCTAGTTGGGGCTTCTGTGGATC
CACTGCCTTCGGAAAGACGCACACCTCGTCAAGTCGAAGCTGGTACCACATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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