© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9102.t1 |
| Gene name | |
| Location | scaffold_41:125691..126703 |
| Strand | - |
| Gene length (bp) | 1012 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 960 |
| Protein length (aa) | 320 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 153 | 175 | 22 |
| 2 | 256 | 278 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 37.94 | 19.48 | 56.40 |
| 5d_25C | Five days - 25 degrees Celsius | 36.19 | 18.51 | 53.87 |
| 7d_25C | Seven days - 25 degrees Celsius | 40.25 | 21.16 | 59.33 |
| 10d_25C | Ten days - 25 degrees Celsius | 51.43 | 28.36 | 74.49 |
| 7d_15C | Seven days - 15 degrees Celsius | 46.76 | 25.25 | 68.26 |
| 7d_30C | Seven days - 30 degrees Celsius | 48.86 | 26.72 | 71.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.908978 | no |
| 3d_25C | 7d_25C | 0.881239 | no |
| 3d_25C | 7d_15C | 0.503412 | no |
| 3d_25C | 7d_30C | 0.389919 | no |
| 3d_25C | 10d_25C | 0.283229 | no |
| 5d_25C | 7d_25C | 0.768951 | no |
| 5d_25C | 7d_15C | 0.391222 | no |
| 5d_25C | 7d_30C | 0.286862 | no |
| 5d_25C | 10d_25C | 0.195146 | no |
| 7d_25C | 7d_15C | 0.652739 | no |
| 7d_25C | 7d_30C | 0.528087 | no |
| 7d_25C | 10d_25C | 0.406281 | no |
| 7d_15C | 7d_30C | 0.911547 | no |
| 7d_15C | 10d_25C | 0.784217 | no |
| 7d_30C | 10d_25C | 0.888456 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9102.t1 MRSPEMSYSPAYYHDQGPNPRSSIVTPPPATRHSQEQSSVLGHPVGESRTSSPIPSRDASPRTSGSRQHRVYHTQ TLGGTAWPGSDARDGGSTLSGAHKEERATSSWADQPSVMSGELSNPSITRVRKRPISNVEIITNEGQDALLMLFR LTIIPFYSLGATLYTIFALLFALFVSPFRLCSFSPYLCATTFASQLCDLLSPILHIHERLVCLQPPSVEDRSSST QSTQWIRSEPDSDQPSVLSEPSEVYAVTSSIFVLLLSPLLSIVILLFAWTAAFFWVFSMVLGNPDGTERKDDGRT AVLGVCKWWRSWLCRARKS* |
| Coding | >Pro_DTO377G3_2|g9102.t1 ATGCGGTCCCCGGAGATGTCATATAGTCCCGCCTACTATCACGATCAAGGACCAAACCCTCGCAGCTCGATTGTT ACCCCACCTCCGGCTACCCGTCATTCCCAAGAACAGTCCTCCGTATTGGGTCACCCTGTAGGCGAATCTCGAACC TCCTCTCCTATACCAAGCCGCGATGCCAGTCCCCGCACCTCCGGATCACGGCAACACCGTGTGTACCATACTCAG ACACTGGGAGGAACTGCCTGGCCCGGCTCAGATGCTCGGGATGGCGGCTCGACATTAAGTGGTGCACACAAGGAA GAGCGGGCGACAAGCAGCTGGGCAGACCAGCCGTCAGTAATGTCGGGGGAACTTTCCAACCCGAGCATAACCCGT GTCCGAAAACGACCCATTTCGAATGTTGAGATAATCACCAATGAGGGCCAGGATGCTCTTCTAATGCTGTTCCGT CTCACTATCATCCCATTCTACTCACTCGGCGCTACTCTATACACTATATTCGCCCTCCTCTTCGCACTCTTTGTT TCACCTTTCCGCCTCTGCTCATTTTCTCCATACCTCTGCGCAACGACGTTCGCATCACAACTTTGCGATCTCCTT TCTCCTATCCTCCACATCCACGAACGGCTCGTTTGCTTGCAGCCACCATCAGTGGAAGACCGATCGTCATCGACC CAATCGACCCAATGGATCCGCTCAGAGCCAGATTCAGACCAGCCGTCAGTGCTATCCGAGCCGAGCGAGGTCTAT GCCGTGACTAGTTCAATCTTCGTACTGCTCTTATCCCCGTTACTCAGCATTGTGATCCTCCTCTTCGCATGGACA GCCGCATTTTTCTGGGTCTTCTCCATGGTCCTAGGTAACCCGGACGGCACCGAGCGAAAGGACGACGGCCGCACC GCCGTTCTCGGAGTTTGCAAATGGTGGCGGTCATGGCTCTGCAGAGCCCGGAAGTCATAA |
| Transcript | >Pro_DTO377G3_2|g9102.t1 ATGCGGTCCCCGGAGATGTCATATAGTCCCGCCTACTATCACGATCAAGGACCAAACCCTCGCAGCTCGATTGTT ACCCCACCTCCGGCTACCCGTCATTCCCAAGAACAGTCCTCCGTATTGGGTCACCCTGTAGGCGAATCTCGAACC TCCTCTCCTATACCAAGCCGCGATGCCAGTCCCCGCACCTCCGGATCACGGCAACACCGTGTGTACCATACTCAG ACACTGGGAGGAACTGCCTGGCCCGGCTCAGATGCTCGGGATGGCGGCTCGACATTAAGTGGTGCACACAAGGAA GAGCGGGCGACAAGCAGCTGGGCAGACCAGCCGTCAGTAATGTCGGGGGAACTTTCCAACCCGAGCATAACCCGT GTCCGAAAACGACCCATTTCGAATGTTGAGATAATCACCAATGAGGGCCAGGATGCTCTTCTAATGCTGTTCCGT CTCACTATCATCCCATTCTACTCACTCGGCGCTACTCTATACACTATATTCGCCCTCCTCTTCGCACTCTTTGTT TCACCTTTCCGCCTCTGCTCATTTTCTCCATACCTCTGCGCAACGACGTTCGCATCACAACTTTGCGATCTCCTT TCTCCTATCCTCCACATCCACGAACGGCTCGTTTGCTTGCAGCCACCATCAGTGGAAGACCGATCGTCATCGACC CAATCGACCCAATGGATCCGCTCAGAGCCAGATTCAGACCAGCCGTCAGTGCTATCCGAGCCGAGCGAGGTCTAT GCCGTGACTAGTTCAATCTTCGTACTGCTCTTATCCCCGTTACTCAGCATTGTGATCCTCCTCTTCGCATGGACA GCCGCATTTTTCTGGGTCTTCTCCATGGTCCTAGGTAACCCGGACGGCACCGAGCGAAAGGACGACGGCCGCACC GCCGTTCTCGGAGTTTGCAAATGGTGGCGGTCATGGCTCTGCAGAGCCCGGAAGTCATAA |
| Gene | >Pro_DTO377G3_2|g9102.t1 ATGCGGTCCCCGGAGATGTCATATAGTCCCGCCTACTATCACGATCAAGGACCAAACCCTCGCAGCTCGATTGTT ACCCCACCTCCGGCTACCCGTCATTCCCAAGAACAGTCCTCCGTATTGGGTCACCCTGTAGGCGAATCTCGAACC TCCTCTCCTATACCAAGCCGCGATGCCAGTCCCCGCACCTCCGGATCACGGCAACACCGTGTGTACCATACTCAG ACACTGGGAGGAACTGCCTGGCCCGGCTCAGATGCTCGGGATGGCGGCTCGACATTAAGTGGTGCACACAAGGAA GAGCGGGCGACAAGCAGCTGGGCAGACCAGCCGTCAGTAATGTCGGGGGAACTTTCCAACCCGAGCATAACCCGT GTCCGAAAACGACCCATTTCGAATGTTGAGATAATCACCAATGAGGGCCAGGATGCTCTTCTAATGCTGGTACGT GCGCAATATAGCGGTCTAATACTTCTATGCTAATACAAACTGGCAGTTCCGTCTCACTATCATCCCATTCTACTC ACTCGGCGCTACTCTATACACTATATTCGCCCTCCTCTTCGCACTCTTTGTTTCACCTTTCCGCCTCTGCTCATT TTCTCCATACCTCTGCGCAACGACGTTCGCATCACAACTTTGCGATCTCCTTTCTCCTATCCTCCACATCCACGA ACGGCTCGTTTGCTTGCAGCCACCATCAGTGGAAGACCGATCGTCATCGACCCAATCGACCCAATGGATCCGCTC AGAGCCAGATTCAGACCAGCCGTCAGTGCTATCCGAGCCGAGCGAGGTCTATGCCGTGACTAGTTCAATCTTCGT ACTGCTCTTATCCCCGTTACTCAGCATTGTGATCCTCCTCTTCGCATGGACAGCCGCATTTTTCTGGGTCTTCTC CATGGTCCTAGGTAACCCGGACGGCACCGAGCGAAAGGACGACGGCCGCACCGCCGTTCTCGGAGTTTGCAAATG GTGGCGGTCATGGCTCTGCAGAGCCCGGAAGTCATAA |