© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9098.t1 |
| Gene name | |
| Location | scaffold_41:117276..119370 |
| Strand | + |
| Gene length (bp) | 2094 |
| Transcript length (bp) | 2094 |
| Coding sequence length (bp) | 2094 |
| Protein length (aa) | 698 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01593 | Amino_oxidase | Flavin containing amine oxidoreductase | 5.9E-35 | 186 | 672 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 1.1E-04 | 181 | 221 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 22.39 | 12.74 | 32.03 |
| 5d_25C | Five days - 25 degrees Celsius | 24.75 | 14.28 | 35.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 20.04 | 11.09 | 28.98 |
| 10d_25C | Ten days - 25 degrees Celsius | 16.04 | 8.47 | 23.62 |
| 7d_15C | Seven days - 15 degrees Celsius | 17.33 | 9.28 | 25.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.07 | 11.05 | 29.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.748006 | no |
| 3d_25C | 7d_25C | 0.731228 | no |
| 3d_25C | 7d_15C | 0.345889 | no |
| 3d_25C | 7d_30C | 0.733102 | no |
| 3d_25C | 10d_25C | 0.200667 | no |
| 5d_25C | 7d_25C | 0.445192 | no |
| 5d_25C | 7d_15C | 0.150713 | no |
| 5d_25C | 7d_30C | 0.445629 | no |
| 5d_25C | 10d_25C | 0.074740 | no |
| 7d_25C | 7d_15C | 0.657386 | no |
| 7d_25C | 7d_30C | 0.996958 | no |
| 7d_25C | 10d_25C | 0.452815 | no |
| 7d_15C | 7d_30C | 0.649625 | no |
| 7d_15C | 10d_25C | 0.836537 | no |
| 7d_30C | 10d_25C | 0.456979 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9098.t1 MLGKSYFAVVMMAAQALPVFGATREREMVKVTVSETVRGGELANIHLDWLGQPPTLIKSVYAPCDNEHSLAKEQI IGQFSFHGHPPQRLVWVVPDEAPTHHCVYIYGSGGPNMTQRVLGKSSPVSLQKKPRKRSTADTIPLLKDFDAQGA WFDGVAKIKDKVESSGGVASKGSPKNTSIAIVGGGISGLATGLMLDSVGIHNWEIIEASDRVGGRFRTKYVADTQ EWAEMGPMRLPYSVTYRDDNETLLYSDHQLTFQMANILNNMNKNDSQWRIDFIPWIQHSPNELYAQGTRRHPDGR IPTRAEIEEDPSLKDASEMTSAVYSKTEDQMNKILKDEKTLKSLQKDVWRAHKTAMDQGLDDWSEQAMMRHVFKA SQNITDEIWTSSDYDVFWDELHHNSNLGLDGSKDSLGETKWLCIDRGFNRLSEAFLPHVRDRLTLNRKVRKLESV KGSDSHTRTRLSWYPNVSNRTFESKEYDYTIMAAPFTMTRFMDLPKFSSVLDRAISEAGLRFKSACKVALLFSER FWEKGDRPIFGGYSKPLSDSVGALYYPVYGLNESRPGLIMHYRGGDWSDRFVSFSDEEHVQTVLDSIVSLHGEQA RDLYTGDYERLCWLQDEYTATSWCRPDVAQHQLYIPAYHQTEHNTIFIGEHTAPTQAWVSSSLHSSVRGSVQLLL ELGLVDEAKELNQRWMGRWIKL* |
| Coding | >Pro_DTO377G3_2|g9098.t1 ATGCTTGGCAAATCATATTTCGCAGTGGTTATGATGGCCGCTCAGGCTTTGCCTGTATTCGGAGCGACGAGGGAA CGAGAAATGGTCAAAGTGACAGTCTCCGAGACGGTTCGAGGTGGTGAACTAGCTAACATTCACCTCGACTGGCTT GGCCAACCGCCAACTTTGATCAAATCTGTCTATGCGCCCTGTGACAATGAACATTCATTGGCAAAAGAGCAAATT ATCGGACAGTTTTCATTTCATGGTCACCCTCCACAGCGACTGGTTTGGGTGGTTCCAGATGAGGCTCCGACGCAC CATTGTGTTTACATATATGGGTCTGGCGGCCCAAATATGACGCAAAGGGTCTTAGGCAAAAGCAGTCCTGTCTCC TTGCAGAAGAAGCCTAGGAAACGATCCACGGCAGACACCATCCCATTGCTGAAGGACTTTGATGCGCAGGGAGCA TGGTTCGACGGAGTGGCCAAAATCAAAGACAAAGTGGAAAGCAGCGGAGGCGTTGCTTCAAAAGGTTCACCAAAG AATACCTCAATCGCAATTGTTGGAGGCGGGATCTCCGGACTTGCAACGGGTTTGATGCTAGACAGCGTCGGTATA CATAACTGGGAGATCATCGAAGCCAGCGACCGCGTTGGGGGCAGATTCCGGACGAAATATGTCGCGGACACTCAA GAGTGGGCTGAGATGGGACCGATGAGACTTCCGTACTCTGTCACTTACAGAGATGACAATGAGACCCTCCTGTAT TCTGATCATCAGTTGACTTTCCAAATGGCCAACATCTTGAACAACATGAACAAGAATGACTCGCAGTGGAGGATT GATTTCATCCCCTGGATCCAACACAGTCCCAATGAGTTATATGCTCAAGGAACTCGCCGTCATCCCGATGGAAGA ATCCCAACTCGCGCTGAGATCGAGGAGGATCCAAGCCTGAAGGACGCCTCAGAAATGACGAGCGCCGTATACAGC AAGACCGAGGATCAGATGAACAAAATTCTAAAAGATGAAAAGACTCTCAAATCTCTTCAGAAGGATGTCTGGAGA GCCCACAAGACCGCCATGGACCAGGGTCTCGATGACTGGAGCGAACAGGCAATGATGCGACATGTCTTCAAAGCC AGTCAGAACATCACCGACGAGATCTGGACCTCCTCCGACTACGATGTATTCTGGGACGAGCTGCATCATAACTCC AATCTCGGCCTAGATGGAAGCAAGGACAGTCTGGGCGAAACAAAATGGCTCTGCATCGATAGAGGATTCAACCGC CTGTCCGAAGCTTTTCTTCCTCACGTCCGCGACAGGCTTACTCTCAATCGAAAAGTTCGGAAACTCGAATCAGTC AAGGGCAGTGATAGTCACACCCGCACTCGACTGTCATGGTACCCCAATGTCTCGAATCGCACCTTTGAGTCCAAA GAGTACGACTACACAATCATGGCAGCGCCATTTACCATGACCCGCTTCATGGATCTACCCAAATTCTCCTCGGTC TTAGACCGCGCGATCAGCGAAGCAGGTCTACGCTTCAAGTCCGCCTGCAAAGTAGCCCTGTTATTCTCCGAGCGA TTCTGGGAAAAGGGCGACCGACCGATTTTCGGCGGCTACTCCAAGCCATTAAGTGACTCAGTCGGTGCACTCTAC TACCCCGTCTACGGACTCAACGAGTCCCGCCCGGGTCTGATCATGCACTATCGAGGCGGCGATTGGAGCGACCGG TTTGTGAGTTTCTCCGACGAAGAACACGTCCAGACAGTGCTGGATTCGATTGTCAGCCTGCACGGTGAACAAGCA CGCGACCTTTACACGGGTGATTATGAGCGCCTCTGCTGGCTTCAAGATGAATATACTGCGACTTCTTGGTGTCGG CCGGATGTTGCACAACATCAACTATACATTCCGGCTTATCATCAGACGGAGCATAACACCATTTTCATTGGAGAG CACACTGCGCCAACGCAGGCTTGGGTTAGTTCTTCGCTGCATTCTTCCGTTCGTGGGTCGGTTCAGCTGCTGCTG GAGTTGGGTTTGGTGGATGAGGCGAAAGAACTTAACCAGCGGTGGATGGGGAGATGGATCAAGCTATGA |
| Transcript | >Pro_DTO377G3_2|g9098.t1 ATGCTTGGCAAATCATATTTCGCAGTGGTTATGATGGCCGCTCAGGCTTTGCCTGTATTCGGAGCGACGAGGGAA CGAGAAATGGTCAAAGTGACAGTCTCCGAGACGGTTCGAGGTGGTGAACTAGCTAACATTCACCTCGACTGGCTT GGCCAACCGCCAACTTTGATCAAATCTGTCTATGCGCCCTGTGACAATGAACATTCATTGGCAAAAGAGCAAATT ATCGGACAGTTTTCATTTCATGGTCACCCTCCACAGCGACTGGTTTGGGTGGTTCCAGATGAGGCTCCGACGCAC CATTGTGTTTACATATATGGGTCTGGCGGCCCAAATATGACGCAAAGGGTCTTAGGCAAAAGCAGTCCTGTCTCC TTGCAGAAGAAGCCTAGGAAACGATCCACGGCAGACACCATCCCATTGCTGAAGGACTTTGATGCGCAGGGAGCA TGGTTCGACGGAGTGGCCAAAATCAAAGACAAAGTGGAAAGCAGCGGAGGCGTTGCTTCAAAAGGTTCACCAAAG AATACCTCAATCGCAATTGTTGGAGGCGGGATCTCCGGACTTGCAACGGGTTTGATGCTAGACAGCGTCGGTATA CATAACTGGGAGATCATCGAAGCCAGCGACCGCGTTGGGGGCAGATTCCGGACGAAATATGTCGCGGACACTCAA GAGTGGGCTGAGATGGGACCGATGAGACTTCCGTACTCTGTCACTTACAGAGATGACAATGAGACCCTCCTGTAT TCTGATCATCAGTTGACTTTCCAAATGGCCAACATCTTGAACAACATGAACAAGAATGACTCGCAGTGGAGGATT GATTTCATCCCCTGGATCCAACACAGTCCCAATGAGTTATATGCTCAAGGAACTCGCCGTCATCCCGATGGAAGA ATCCCAACTCGCGCTGAGATCGAGGAGGATCCAAGCCTGAAGGACGCCTCAGAAATGACGAGCGCCGTATACAGC AAGACCGAGGATCAGATGAACAAAATTCTAAAAGATGAAAAGACTCTCAAATCTCTTCAGAAGGATGTCTGGAGA GCCCACAAGACCGCCATGGACCAGGGTCTCGATGACTGGAGCGAACAGGCAATGATGCGACATGTCTTCAAAGCC AGTCAGAACATCACCGACGAGATCTGGACCTCCTCCGACTACGATGTATTCTGGGACGAGCTGCATCATAACTCC AATCTCGGCCTAGATGGAAGCAAGGACAGTCTGGGCGAAACAAAATGGCTCTGCATCGATAGAGGATTCAACCGC CTGTCCGAAGCTTTTCTTCCTCACGTCCGCGACAGGCTTACTCTCAATCGAAAAGTTCGGAAACTCGAATCAGTC AAGGGCAGTGATAGTCACACCCGCACTCGACTGTCATGGTACCCCAATGTCTCGAATCGCACCTTTGAGTCCAAA GAGTACGACTACACAATCATGGCAGCGCCATTTACCATGACCCGCTTCATGGATCTACCCAAATTCTCCTCGGTC TTAGACCGCGCGATCAGCGAAGCAGGTCTACGCTTCAAGTCCGCCTGCAAAGTAGCCCTGTTATTCTCCGAGCGA TTCTGGGAAAAGGGCGACCGACCGATTTTCGGCGGCTACTCCAAGCCATTAAGTGACTCAGTCGGTGCACTCTAC TACCCCGTCTACGGACTCAACGAGTCCCGCCCGGGTCTGATCATGCACTATCGAGGCGGCGATTGGAGCGACCGG TTTGTGAGTTTCTCCGACGAAGAACACGTCCAGACAGTGCTGGATTCGATTGTCAGCCTGCACGGTGAACAAGCA CGCGACCTTTACACGGGTGATTATGAGCGCCTCTGCTGGCTTCAAGATGAATATACTGCGACTTCTTGGTGTCGG CCGGATGTTGCACAACATCAACTATACATTCCGGCTTATCATCAGACGGAGCATAACACCATTTTCATTGGAGAG CACACTGCGCCAACGCAGGCTTGGGTTAGTTCTTCGCTGCATTCTTCCGTTCGTGGGTCGGTTCAGCTGCTGCTG GAGTTGGGTTTGGTGGATGAGGCGAAAGAACTTAACCAGCGGTGGATGGGGAGATGGATCAAGCTATGA |
| Gene | >Pro_DTO377G3_2|g9098.t1 ATGCTTGGCAAATCATATTTCGCAGTGGTTATGATGGCCGCTCAGGCTTTGCCTGTATTCGGAGCGACGAGGGAA CGAGAAATGGTCAAAGTGACAGTCTCCGAGACGGTTCGAGGTGGTGAACTAGCTAACATTCACCTCGACTGGCTT GGCCAACCGCCAACTTTGATCAAATCTGTCTATGCGCCCTGTGACAATGAACATTCATTGGCAAAAGAGCAAATT ATCGGACAGTTTTCATTTCATGGTCACCCTCCACAGCGACTGGTTTGGGTGGTTCCAGATGAGGCTCCGACGCAC CATTGTGTTTACATATATGGGTCTGGCGGCCCAAATATGACGCAAAGGGTCTTAGGCAAAAGCAGTCCTGTCTCC TTGCAGAAGAAGCCTAGGAAACGATCCACGGCAGACACCATCCCATTGCTGAAGGACTTTGATGCGCAGGGAGCA TGGTTCGACGGAGTGGCCAAAATCAAAGACAAAGTGGAAAGCAGCGGAGGCGTTGCTTCAAAAGGTTCACCAAAG AATACCTCAATCGCAATTGTTGGAGGCGGGATCTCCGGACTTGCAACGGGTTTGATGCTAGACAGCGTCGGTATA CATAACTGGGAGATCATCGAAGCCAGCGACCGCGTTGGGGGCAGATTCCGGACGAAATATGTCGCGGACACTCAA GAGTGGGCTGAGATGGGACCGATGAGACTTCCGTACTCTGTCACTTACAGAGATGACAATGAGACCCTCCTGTAT TCTGATCATCAGTTGACTTTCCAAATGGCCAACATCTTGAACAACATGAACAAGAATGACTCGCAGTGGAGGATT GATTTCATCCCCTGGATCCAACACAGTCCCAATGAGTTATATGCTCAAGGAACTCGCCGTCATCCCGATGGAAGA ATCCCAACTCGCGCTGAGATCGAGGAGGATCCAAGCCTGAAGGACGCCTCAGAAATGACGAGCGCCGTATACAGC AAGACCGAGGATCAGATGAACAAAATTCTAAAAGATGAAAAGACTCTCAAATCTCTTCAGAAGGATGTCTGGAGA GCCCACAAGACCGCCATGGACCAGGGTCTCGATGACTGGAGCGAACAGGCAATGATGCGACATGTCTTCAAAGCC AGTCAGAACATCACCGACGAGATCTGGACCTCCTCCGACTACGATGTATTCTGGGACGAGCTGCATCATAACTCC AATCTCGGCCTAGATGGAAGCAAGGACAGTCTGGGCGAAACAAAATGGCTCTGCATCGATAGAGGATTCAACCGC CTGTCCGAAGCTTTTCTTCCTCACGTCCGCGACAGGCTTACTCTCAATCGAAAAGTTCGGAAACTCGAATCAGTC AAGGGCAGTGATAGTCACACCCGCACTCGACTGTCATGGTACCCCAATGTCTCGAATCGCACCTTTGAGTCCAAA GAGTACGACTACACAATCATGGCAGCGCCATTTACCATGACCCGCTTCATGGATCTACCCAAATTCTCCTCGGTC TTAGACCGCGCGATCAGCGAAGCAGGTCTACGCTTCAAGTCCGCCTGCAAAGTAGCCCTGTTATTCTCCGAGCGA TTCTGGGAAAAGGGCGACCGACCGATTTTCGGCGGCTACTCCAAGCCATTAAGTGACTCAGTCGGTGCACTCTAC TACCCCGTCTACGGACTCAACGAGTCCCGCCCGGGTCTGATCATGCACTATCGAGGCGGCGATTGGAGCGACCGG TTTGTGAGTTTCTCCGACGAAGAACACGTCCAGACAGTGCTGGATTCGATTGTCAGCCTGCACGGTGAACAAGCA CGCGACCTTTACACGGGTGATTATGAGCGCCTCTGCTGGCTTCAAGATGAATATACTGCGACTTCTTGGTGTCGG CCGGATGTTGCACAACATCAACTATACATTCCGGCTTATCATCAGACGGAGCATAACACCATTTTCATTGGAGAG CACACTGCGCCAACGCAGGCTTGGGTTAGTTCTTCGCTGCATTCTTCCGTTCGTGGGTCGGTTCAGCTGCTGCTG GAGTTGGGTTTGGTGGATGAGGCGAAAGAACTTAACCAGCGGTGGATGGGGAGATGGATCAAGCTATGA |