Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g9097.t1
Gene name
Locationscaffold_41:115797..116181
Strand-
Gene length (bp)384
Transcript length (bp)384
Coding sequence length (bp)384
Protein length (aa) 128

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16010 CDH-cyt Cytochrome domain of cellobiose dehydrogenase 1.7E-13 25 122

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 60.61 23.59 97.64
5d_25C Five days - 25 degrees Celsius 178.65 93.70 263.60
7d_25C Seven days - 25 degrees Celsius 229.10 128.71 329.49
10d_25C Ten days - 25 degrees Celsius 464.84 280.82 648.86
7d_15C Seven days - 15 degrees Celsius 231.42 126.97 335.86
7d_30C Seven days - 30 degrees Celsius 149.77 75.26 224.28

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.000700 yes
3d_25C 7d_25C 0.000700 yes
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.002297 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.381416 no
5d_25C 7d_15C 0.362091 no
5d_25C 7d_30C 0.589524 no
5d_25C 10d_25C 0.000700 yes
7d_25C 7d_15C 0.980718 no
7d_25C 7d_30C 0.099018 no
7d_25C 10d_25C 0.000700 yes
7d_15C 7d_30C 0.091757 no
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.000700 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g9097.t1
MVRHIFAWLWAIPALAQVHSIHPQGHSEITYSFNVPDNTAESGSGPIYFQINSTRQVQWFALGQGMQMAGANMFV
VYTSGNKVTVSPRSGVGEIEPLYNKDAQITILNGSGVHDGVITANVRFAIPA*
Coding >Pro_DTO377G3_2|g9097.t1
ATGGTTCGGCATATTTTCGCTTGGCTCTGGGCCATTCCTGCCCTGGCCCAAGTTCATAGCATTCATCCGCAAGGC
CACAGTGAGATCACCTATAGCTTCAATGTCCCCGACAATACTGCTGAGTCAGGCTCGGGCCCCATATACTTTCAA
ATAAATTCTACTCGCCAAGTGCAGTGGTTTGCCTTGGGCCAAGGAATGCAAATGGCAGGCGCCAATATGTTTGTC
GTGTACACGTCTGGCAACAAGGTCACCGTTTCTCCGCGGTCTGGTGTTGGGGAAATTGAACCGTTGTATAACAAG
GACGCCCAGATCACCATTCTGAATGGTAGTGGTGTACACGACGGAGTTATCACTGCCAATGTTCGATTTGCGATA
CCTGCCTAA
Transcript >Pro_DTO377G3_2|g9097.t1
ATGGTTCGGCATATTTTCGCTTGGCTCTGGGCCATTCCTGCCCTGGCCCAAGTTCATAGCATTCATCCGCAAGGC
CACAGTGAGATCACCTATAGCTTCAATGTCCCCGACAATACTGCTGAGTCAGGCTCGGGCCCCATATACTTTCAA
ATAAATTCTACTCGCCAAGTGCAGTGGTTTGCCTTGGGCCAAGGAATGCAAATGGCAGGCGCCAATATGTTTGTC
GTGTACACGTCTGGCAACAAGGTCACCGTTTCTCCGCGGTCTGGTGTTGGGGAAATTGAACCGTTGTATAACAAG
GACGCCCAGATCACCATTCTGAATGGTAGTGGTGTACACGACGGAGTTATCACTGCCAATGTTCGATTTGCGATA
CCTGCCTAA
Gene >Pro_DTO377G3_2|g9097.t1
ATGGTTCGGCATATTTTCGCTTGGCTCTGGGCCATTCCTGCCCTGGCCCAAGTTCATAGCATTCATCCGCAAGGC
CACAGTGAGATCACCTATAGCTTCAATGTCCCCGACAATACTGCTGAGTCAGGCTCGGGCCCCATATACTTTCAA
ATAAATTCTACTCGCCAAGTGCAGTGGTTTGCCTTGGGCCAAGGAATGCAAATGGCAGGCGCCAATATGTTTGTC
GTGTACACGTCTGGCAACAAGGTCACCGTTTCTCCGCGGTCTGGTGTTGGGGAAATTGAACCGTTGTATAACAAG
GACGCCCAGATCACCATTCTGAATGGTAGTGGTGTACACGACGGAGTTATCACTGCCAATGTTCGATTTGCGATA
CCTGCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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