© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g909.t1 |
| Gene name | |
| Location | scaffold_01:2413769..2414777 |
| Strand | - |
| Gene length (bp) | 1008 |
| Transcript length (bp) | 780 |
| Coding sequence length (bp) | 780 |
| Protein length (aa) | 260 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02798 | GST_N | Glutathione S-transferase, N-terminal domain | 1.6E-13 | 12 | 85 |
| PF13409 | GST_N_2 | Glutathione S-transferase, N-terminal domain | 3.7E-09 | 19 | 87 |
| PF13417 | GST_N_3 | Glutathione S-transferase, N-terminal domain | 1.0E-07 | 17 | 91 |
| PF14497 | GST_C_3 | Glutathione S-transferase, C-terminal domain | 3.0E-06 | 163 | 239 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0006749 | glutathione metabolic process | Yes |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006575 | cellular modified amino acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 390.46 | 237.18 | 543.74 |
| 5d_25C | Five days - 25 degrees Celsius | 416.43 | 251.46 | 581.40 |
| 7d_25C | Seven days - 25 degrees Celsius | 399.53 | 235.71 | 563.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 469.16 | 280.17 | 658.15 |
| 7d_15C | Seven days - 15 degrees Celsius | 532.04 | 307.70 | 756.38 |
| 7d_30C | Seven days - 30 degrees Celsius | 310.24 | 185.84 | 434.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.836255 | no |
| 3d_25C | 7d_25C | 0.945166 | no |
| 3d_25C | 7d_15C | 0.176676 | no |
| 3d_25C | 7d_30C | 0.331485 | no |
| 3d_25C | 10d_25C | 0.469147 | no |
| 5d_25C | 7d_25C | 0.903084 | no |
| 5d_25C | 7d_15C | 0.323588 | no |
| 5d_25C | 7d_30C | 0.204523 | no |
| 5d_25C | 10d_25C | 0.681194 | no |
| 7d_25C | 7d_15C | 0.234965 | no |
| 7d_25C | 7d_30C | 0.294345 | no |
| 7d_25C | 10d_25C | 0.548723 | no |
| 7d_15C | 7d_30C | 0.013513 | yes |
| 7d_15C | 10d_25C | 0.670583 | no |
| 7d_30C | 10d_25C | 0.057587 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g909.t1 MANNQGCKITLYWLEQSRSHRILWLLEELKLEYELKTFKRRADKLAPAELKEVHPLGKSPIVTIQAPGAAKPLVL AESGAIMEYLCDHFGNARPTLVPQRYTTGSEGQVGGETEEWMRYRYFMHYVEGSLMPFLVMSLVNDTIRNAPPFF IRPITGMVAAQVDNHFLNRNIDGNLAFLEDQLRTSPEGGEYICGKELTAADILLSFPVIAVTGRALKEQKNKDKY PLIIQYAKRLENNEGYQRAVKKIEAIEGKFSASM* |
| Coding | >Pro_DTO377G3_2|g909.t1 ATGGCCAACAATCAAGGCTGCAAGATCACACTCTATTGGCTCGAGCAATCCCGAAGCCACCGCATCCTCTGGCTC TTAGAAGAACTGAAACTGGAATATGAACTCAAGACCTTCAAACGCCGCGCCGACAAGCTCGCTCCGGCCGAGTTG AAAGAGGTCCACCCACTGGGCAAGTCACCTATAGTGACCATCCAAGCACCGGGCGCCGCAAAACCGCTAGTGCTG GCGGAGTCGGGGGCGATCATGGAATACCTCTGTGACCACTTTGGTAACGCGCGCCCGACGCTAGTACCACAACGC TACACAACGGGCAGCGAGGGCCAAGTGGGTGGAGAGACCGAGGAGTGGATGCGCTACCGCTACTTCATGCACTAC GTGGAGGGCAGCCTGATGCCGTTCTTGGTCATGAGTCTTGTGAATGACACTATTCGGAACGCCCCTCCATTCTTC ATTCGGCCTATCACCGGCATGGTTGCCGCCCAAGTGGATAATCACTTCCTCAACCGCAACATTGATGGTAATCTC GCTTTCCTTGAGGACCAGCTCCGCACGTCTCCTGAGGGTGGCGAGTACATCTGCGGTAAGGAGTTGACGGCTGCT GATATCCTGCTGAGTTTCCCGGTCATTGCTGTCACCGGGAGAGCGCTGAAGGAGCAGAAGAACAAGGATAAATAC CCTCTTATAATCCAGTATGCCAAGCGCCTCGAGAACAATGAGGGGTACCAGCGTGCTGTGAAGAAGATCGAGGCG ATCGAGGGGAAATTCTCGGCTTCCATGTAA |
| Transcript | >Pro_DTO377G3_2|g909.t1 ATGGCCAACAATCAAGGCTGCAAGATCACACTCTATTGGCTCGAGCAATCCCGAAGCCACCGCATCCTCTGGCTC TTAGAAGAACTGAAACTGGAATATGAACTCAAGACCTTCAAACGCCGCGCCGACAAGCTCGCTCCGGCCGAGTTG AAAGAGGTCCACCCACTGGGCAAGTCACCTATAGTGACCATCCAAGCACCGGGCGCCGCAAAACCGCTAGTGCTG GCGGAGTCGGGGGCGATCATGGAATACCTCTGTGACCACTTTGGTAACGCGCGCCCGACGCTAGTACCACAACGC TACACAACGGGCAGCGAGGGCCAAGTGGGTGGAGAGACCGAGGAGTGGATGCGCTACCGCTACTTCATGCACTAC GTGGAGGGCAGCCTGATGCCGTTCTTGGTCATGAGTCTTGTGAATGACACTATTCGGAACGCCCCTCCATTCTTC ATTCGGCCTATCACCGGCATGGTTGCCGCCCAAGTGGATAATCACTTCCTCAACCGCAACATTGATGGTAATCTC GCTTTCCTTGAGGACCAGCTCCGCACGTCTCCTGAGGGTGGCGAGTACATCTGCGGTAAGGAGTTGACGGCTGCT GATATCCTGCTGAGTTTCCCGGTCATTGCTGTCACCGGGAGAGCGCTGAAGGAGCAGAAGAACAAGGATAAATAC CCTCTTATAATCCAGTATGCCAAGCGCCTCGAGAACAATGAGGGGTACCAGCGTGCTGTGAAGAAGATCGAGGCG ATCGAGGGGAAATTCTCGGCTTCCATGTAA |
| Gene | >Pro_DTO377G3_2|g909.t1 ATGGCCAACAATCAAGGCTGCAAGATCACACTCTATTGGTACGCCCCATCACAAATTGCTCAGAATCATACTAAC TAACATAAATCCAGGCTCGAGCAATCCCGAAGCCACCGCATCCTCTGGCTCTTAGAAGAACTGAAACTGGAATAT GAACTCAAGACCTTCAAACGCCGCGCCGACAAGCTCGCTCCGGCCGAGTTGAAAGAGGTCCACCCACTGGGCAAG TCACCTATAGTGACCATCCAAGCACCGGGCGCCGCAAAACCGCTAGTGCTGGCGGAGTCGGGGGCGATCATGGAA TACCTCTGTGACCACTTTGGTAACGCGCGCCCGACGCTAGTACCACAACGCTACACAACGGGCAGCGAGGGCCAA GTGGGTGGAGAGACCGAGGAGTGGATGCGCTACCGCTACTTCATGCACTACGTGGAGGGCAGCCTGATGCCGTTC TTGGTCATGAGTCTTGTGAATGACAGTAAGTGTTCTTTTCTTTTCTTTTCTTTTTTTTAAGAGCGGTCAACGTGT ACAATGTACATTTTCGTTCGTTCTCGCATATGCATGCATGCATGCATGGCATGGCGTTGATGGATCATGGCCCCC GATGTGTATGTTGTAACTATTATTTGAAGCAGCTGACATTTATTTTCAACAGCTATTCGGAACGCCCCTCCATTC TTCATTCGGCCTATCACCGGCATGGTTGCCGCCCAAGTGGATAATCACTTCCTCAACCGCAACATTGATGGTAAT CTCGCTTTCCTTGAGGACCAGCTCCGCACGTCTCCTGAGGGTGGCGAGTACATCTGCGGTAAGGAGTTGACGGCT GCTGATATCCTGCTGAGTTTCCCGGTCATTGCTGTCACCGGGAGAGCGCTGAAGGAGCAGAAGAACAAGGATAAA TACCCTCTTATAATCCAGTATGCCAAGCGCCTCGAGAACAATGAGGGGTACCAGCGTGCTGTGAAGAAGATCGAG GCGATCGAGGGGAAATTCTCGGCTTCCATGTAA |