© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g9063.t1 |
| Gene name | |
| Location | scaffold_41:46818..49330 |
| Strand | + |
| Gene length (bp) | 2512 |
| Transcript length (bp) | 2220 |
| Coding sequence length (bp) | 2220 |
| Protein length (aa) | 740 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03169 | OPT | OPT oligopeptide transporter protein | 5.3E-168 | 56 | 696 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035673 | oligopeptide transmembrane transporter activity | Yes |
| GO:1904680 | peptide transmembrane transporter activity | No |
| GO:0042887 | amide transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 90 | 112 | 22 |
| 3 | 124 | 146 | 22 |
| 4 | 161 | 183 | 22 |
| 5 | 220 | 254 | 34 |
| 6 | 292 | 314 | 22 |
| 7 | 366 | 388 | 22 |
| 8 | 417 | 439 | 22 |
| 9 | 444 | 466 | 22 |
| 10 | 486 | 508 | 22 |
| 11 | 529 | 551 | 22 |
| 12 | 597 | 619 | 22 |
| 13 | 632 | 654 | 22 |
| 14 | 684 | 706 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 19.13 | 10.63 | 27.63 |
| 5d_25C | Five days - 25 degrees Celsius | 17.92 | 9.87 | 25.96 |
| 7d_25C | Seven days - 25 degrees Celsius | 18.65 | 10.34 | 26.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 17.81 | 9.80 | 25.82 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.07 | 9.72 | 26.41 |
| 7d_30C | Seven days - 30 degrees Celsius | 13.57 | 6.98 | 20.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.857196 | no |
| 3d_25C | 7d_25C | 0.950034 | no |
| 3d_25C | 7d_15C | 0.878221 | no |
| 3d_25C | 7d_30C | 0.203722 | no |
| 3d_25C | 10d_25C | 0.841096 | no |
| 5d_25C | 7d_25C | 0.917194 | no |
| 5d_25C | 7d_15C | 0.984350 | no |
| 5d_25C | 7d_30C | 0.335092 | no |
| 5d_25C | 10d_25C | 0.987719 | no |
| 7d_25C | 7d_15C | 0.936465 | no |
| 7d_25C | 7d_30C | 0.253043 | no |
| 7d_25C | 10d_25C | 0.901802 | no |
| 7d_15C | 7d_30C | 0.330769 | no |
| 7d_15C | 10d_25C | 0.972658 | no |
| 7d_30C | 10d_25C | 0.344624 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g9063.t1 MERAQKSQKSPSEQDRIDVLHDRDAEKILPYEADDSPFPEVRAVIQPVNDLTLPVNTVRMWTIGILFTIVGSGLN QFFSLRQPSVNISALVAQLLAFPLGCAWAKWIPLGVLNPDRHFNIKEHALITIMANVSIGSAAATQIIEALVKFY NMPSQGGFEVLLCITTQLFGFGLAGMASRWLVGPASMIWPQVLSNAALLTTLHSRSDTIADGWQITRLRFFLYVF VGGAIWYFVPGYLFTGLSTFAFICWIVPFNVVVNQLFGQTTGLGMSVLTFDWAQVVYANQSPLLVPFWAGLNVMG SFALFFWLVCPLVYYTNTWYSAHLPLLNSNTFDNTGTPYNTSRIMGSSGRIDQTAYRNYSPMFLPAGYAITFGVA FANLTGIFFHIALYHGKDLWQQWKGTSKQDVHIRLMSSYRAVPWWWFAAVTVLMFVLSIVTNEVWHTGLPAWGVL VAFVLPVVYFIPVGVIKALTNISSNQLNLLTEFIGGYAFLGQPVANMAFKFYGYVAVQQGLEFVADMKLAHYMHI APRLLFVAQGLATLIGAIVQCGVTVFMITRIDGVCTPEAQGNFICPHGKVTYSSSLIWGAVGPGRLFSSGQIYSN LLWFFLVGPAVVVITYLLGRRWKAANHVSWPVAFGAMSLVPPATGISFSSWWIVNLIFNGVLRHRKPAWWSKYNY VLSAALDCGVAVATVIIFFCITLPAGSLNWWGNAVSKTTADGKGTPYMGLPAHGYFGPPKGTWE* |
| Coding | >Pro_DTO377G3_2|g9063.t1 ATGGAGAGGGCCCAGAAGAGCCAGAAATCCCCTTCAGAGCAAGATAGAATTGACGTTCTTCACGATCGGGATGCC GAAAAGATCTTACCCTATGAAGCCGATGATTCGCCTTTTCCCGAGGTGCGGGCTGTCATCCAGCCAGTCAATGAC TTGACGCTGCCTGTTAACACGGTCCGCATGTGGACTATTGGTATTTTGTTTACTATCGTCGGTAGTGGACTGAAC CAGTTCTTCAGCTTACGACAGCCCAGTGTGAATATCAGTGCTCTAGTAGCACAGTTACTCGCTTTCCCTCTGGGA TGCGCCTGGGCGAAATGGATTCCCCTTGGGGTCTTGAATCCCGACCGGCATTTCAATATCAAGGAGCATGCCTTG ATCACAATCATGGCAAACGTCTCTATTGGCTCTGCTGCTGCCACCCAAATTATCGAAGCGCTTGTCAAGTTCTAT AATATGCCGTCACAGGGTGGGTTTGAAGTCTTGTTGTGCATTACCACGCAATTGTTTGGCTTCGGCTTAGCCGGC ATGGCGTCGCGCTGGCTAGTTGGCCCAGCATCGATGATTTGGCCGCAGGTGTTGTCAAATGCCGCACTTTTGACC ACTCTCCATTCTCGCTCTGATACCATCGCAGATGGCTGGCAGATCACACGTCTTCGCTTCTTTCTTTATGTGTTC GTCGGTGGTGCCATCTGGTACTTCGTCCCGGGATATCTCTTTACGGGTCTCAGCACATTCGCCTTCATTTGCTGG ATTGTGCCATTCAATGTGGTGGTGAATCAGCTCTTTGGGCAAACCACCGGACTAGGGATGTCGGTATTGACCTTT GACTGGGCCCAGGTGGTCTATGCCAACCAAAGCCCCCTGCTTGTTCCCTTCTGGGCTGGCCTTAATGTGATGGGA TCATTTGCACTCTTCTTTTGGCTTGTGTGCCCCCTCGTTTACTACACCAACACCTGGTATTCCGCACACTTGCCA CTGCTCAATTCCAACACCTTCGATAATACTGGAACTCCTTATAACACCAGTCGTATCATGGGTTCGAGCGGGAGG ATCGACCAAACTGCGTATCGGAACTATTCGCCCATGTTTTTACCGGCTGGCTATGCAATCACATTTGGGGTTGCC TTTGCTAACTTGACGGGCATCTTCTTCCACATCGCGTTGTATCATGGGAAAGACTTGTGGCAACAATGGAAGGGC ACTAGCAAACAAGACGTCCATATTCGACTGATGTCTTCATATCGAGCCGTACCCTGGTGGTGGTTTGCTGCAGTA ACTGTCCTGATGTTTGTCTTGAGTATCGTGACCAACGAGGTGTGGCATACGGGTCTACCGGCATGGGGTGTGCTT GTGGCATTCGTGTTACCAGTGGTCTACTTTATCCCTGTGGGAGTCATCAAAGCGCTCACAAATATCAGTAGTAAC CAACTGAACCTGCTCACGGAATTCATTGGCGGGTATGCATTCCTCGGGCAGCCCGTGGCCAACATGGCTTTCAAA TTCTATGGTTATGTCGCCGTCCAGCAAGGACTCGAATTTGTCGCCGATATGAAGTTGGCTCATTATATGCACATC GCCCCACGCCTTCTGTTTGTAGCCCAAGGCCTTGCCACACTCATCGGAGCTATCGTTCAATGTGGTGTGACAGTG TTCATGATCACAAGAATTGATGGTGTATGCACCCCTGAAGCCCAGGGAAATTTCATCTGCCCTCATGGAAAGGTC ACATATTCTTCGTCTCTTATTTGGGGTGCTGTTGGTCCAGGTCGGTTGTTTTCTTCCGGGCAGATATATAGCAAT CTGCTTTGGTTTTTCCTGGTCGGGCCTGCGGTGGTAGTCATCACCTATCTTCTAGGTCGTCGTTGGAAAGCTGCC AACCATGTCTCCTGGCCCGTCGCTTTTGGTGCAATGAGTCTAGTCCCACCTGCCACAGGTATCAGCTTCTCCTCG TGGTGGATAGTCAACTTGATATTCAATGGCGTACTCCGTCACCGCAAACCCGCGTGGTGGTCGAAATACAATTAT GTACTATCCGCCGCGCTAGACTGCGGCGTTGCAGTCGCTACAGTAATCATTTTCTTTTGCATAACTCTCCCAGCT GGTTCGTTGAACTGGTGGGGAAATGCTGTGTCGAAAACCACAGCCGACGGCAAAGGCACGCCCTACATGGGCTTA CCCGCGCATGGCTACTTTGGCCCCCCAAAAGGAACTTGGGAGTGA |
| Transcript | >Pro_DTO377G3_2|g9063.t1 ATGGAGAGGGCCCAGAAGAGCCAGAAATCCCCTTCAGAGCAAGATAGAATTGACGTTCTTCACGATCGGGATGCC GAAAAGATCTTACCCTATGAAGCCGATGATTCGCCTTTTCCCGAGGTGCGGGCTGTCATCCAGCCAGTCAATGAC TTGACGCTGCCTGTTAACACGGTCCGCATGTGGACTATTGGTATTTTGTTTACTATCGTCGGTAGTGGACTGAAC CAGTTCTTCAGCTTACGACAGCCCAGTGTGAATATCAGTGCTCTAGTAGCACAGTTACTCGCTTTCCCTCTGGGA TGCGCCTGGGCGAAATGGATTCCCCTTGGGGTCTTGAATCCCGACCGGCATTTCAATATCAAGGAGCATGCCTTG ATCACAATCATGGCAAACGTCTCTATTGGCTCTGCTGCTGCCACCCAAATTATCGAAGCGCTTGTCAAGTTCTAT AATATGCCGTCACAGGGTGGGTTTGAAGTCTTGTTGTGCATTACCACGCAATTGTTTGGCTTCGGCTTAGCCGGC ATGGCGTCGCGCTGGCTAGTTGGCCCAGCATCGATGATTTGGCCGCAGGTGTTGTCAAATGCCGCACTTTTGACC ACTCTCCATTCTCGCTCTGATACCATCGCAGATGGCTGGCAGATCACACGTCTTCGCTTCTTTCTTTATGTGTTC GTCGGTGGTGCCATCTGGTACTTCGTCCCGGGATATCTCTTTACGGGTCTCAGCACATTCGCCTTCATTTGCTGG ATTGTGCCATTCAATGTGGTGGTGAATCAGCTCTTTGGGCAAACCACCGGACTAGGGATGTCGGTATTGACCTTT GACTGGGCCCAGGTGGTCTATGCCAACCAAAGCCCCCTGCTTGTTCCCTTCTGGGCTGGCCTTAATGTGATGGGA TCATTTGCACTCTTCTTTTGGCTTGTGTGCCCCCTCGTTTACTACACCAACACCTGGTATTCCGCACACTTGCCA CTGCTCAATTCCAACACCTTCGATAATACTGGAACTCCTTATAACACCAGTCGTATCATGGGTTCGAGCGGGAGG ATCGACCAAACTGCGTATCGGAACTATTCGCCCATGTTTTTACCGGCTGGCTATGCAATCACATTTGGGGTTGCC TTTGCTAACTTGACGGGCATCTTCTTCCACATCGCGTTGTATCATGGGAAAGACTTGTGGCAACAATGGAAGGGC ACTAGCAAACAAGACGTCCATATTCGACTGATGTCTTCATATCGAGCCGTACCCTGGTGGTGGTTTGCTGCAGTA ACTGTCCTGATGTTTGTCTTGAGTATCGTGACCAACGAGGTGTGGCATACGGGTCTACCGGCATGGGGTGTGCTT GTGGCATTCGTGTTACCAGTGGTCTACTTTATCCCTGTGGGAGTCATCAAAGCGCTCACAAATATCAGTAGTAAC CAACTGAACCTGCTCACGGAATTCATTGGCGGGTATGCATTCCTCGGGCAGCCCGTGGCCAACATGGCTTTCAAA TTCTATGGTTATGTCGCCGTCCAGCAAGGACTCGAATTTGTCGCCGATATGAAGTTGGCTCATTATATGCACATC GCCCCACGCCTTCTGTTTGTAGCCCAAGGCCTTGCCACACTCATCGGAGCTATCGTTCAATGTGGTGTGACAGTG TTCATGATCACAAGAATTGATGGTGTATGCACCCCTGAAGCCCAGGGAAATTTCATCTGCCCTCATGGAAAGGTC ACATATTCTTCGTCTCTTATTTGGGGTGCTGTTGGTCCAGGTCGGTTGTTTTCTTCCGGGCAGATATATAGCAAT CTGCTTTGGTTTTTCCTGGTCGGGCCTGCGGTGGTAGTCATCACCTATCTTCTAGGTCGTCGTTGGAAAGCTGCC AACCATGTCTCCTGGCCCGTCGCTTTTGGTGCAATGAGTCTAGTCCCACCTGCCACAGGTATCAGCTTCTCCTCG TGGTGGATAGTCAACTTGATATTCAATGGCGTACTCCGTCACCGCAAACCCGCGTGGTGGTCGAAATACAATTAT GTACTATCCGCCGCGCTAGACTGCGGCGTTGCAGTCGCTACAGTAATCATTTTCTTTTGCATAACTCTCCCAGCT GGTTCGTTGAACTGGTGGGGAAATGCTGTGTCGAAAACCACAGCCGACGGCAAAGGCACGCCCTACATGGGCTTA CCCGCGCATGGCTACTTTGGCCCCCCAAAAGGAACTTGGGAGTGA |
| Gene | >Pro_DTO377G3_2|g9063.t1 ATGGAGAGGGCCCAGAAGAGCCAGGTGAGTGTCCACTTCTAAGCTGATCCAGATATATCATATCCCCCATATATA TTGTTATTAACTGTTTCACATCTCAGAAATCCCCTTCAGAGCAAGATAGAATTGACGTTCTTCACGATCGGGATG CCGAAAAGATCTTACCCTATGAAGCCGATGATTCGCCTTTTCCCGAGGTGCGGGCTGTCATCCAGCCAGTCAATG ACTTGACGCTGCCTGTTAACACGGTCCGCATGTGGACTATTGGTATTTTGTTTACTATCGTGAGTCTTGTTTTCT ATGCGACCGGACAATTGGCAAGATAACTAACGTCGACACAGGTCGGTAGTGGACTGAACCAGTTCTTCAGCTTAC GACAGCCCAGTGTGAATATCAGTGCTCTAGTAGCACAGTTACTCGCTTTCCCTCTGGGATGCGCCTGGGCGAAAT GGATTCCCCTTGGGGTCTTGAATCCCGACCGGCATTTCAATATCAAGGAGCATGCCTTGATCACAATCATGGCAA ACGTCTCTATTGGCTCTGCTGCTGCCACCCAAATTATCGAAGCGCTTGTCAAGTTCTATAATATGCCGTCACAGG GTGGGTTTGAAGTCTTGTTGTGCATTACCACGCAATTGTTTGGCTTCGGCTTAGCCGGCATGGCGTCGCGCTGGC TAGTTGGCCCAGCATCGATGATTTGGCCGCAGGTGTTGTCAAATGCCGCACTTTTGACCACTCTCCATTCTCGCT CTGATACCATCGCAGATGGCTGGCAGATCACACGTCTTCGCTTCTTTCTTTATGTGTTCGTCGGTGGTGCCATCT GGTACTTCGTCCCGGGATATCTCTTTACGGGTCTCAGCACATTCGCCTTCATTTGCTGGATTGTGCCATTCAATG TGGTGGTGAATCAGCTCTTTGGGCAAACCACCGGACTAGGGATGTCGGTATTGACCTTTGACTGGGCCCAGGTGG TCTATGCCAACCAAAGCCCCCTGCTTGTTCCCTTCTGGGCTGGCCTTAATGTGATGGGATCATTTGCACTCTTCT TTTGGCTTGTGTGCCCCCTCGTTTACTACACCAACACCTGGTATTCCGCACACTTGCCACTGCTCAATTCCAACA CCTTCGATAATACTGGAACTCCTTATAACACCAGTCGTATCATGGGTTCGAGCGGGAGGATCGACCAAACTGCGT ATCGGAACTATTCGCCCATGTTTTTACCGGCTGGCTATGCAATCACATTTGGGGTTGCCTTTGCTAACTTGACGG GCATCTTCTTCCACATCGCGTTGTATCATGGGAAAGACTTGTGGCAACAATGGAAGGGCACTAGCAAACAAGACG TCCATATTCGACTGATGTCTTCATATCGAGCCGTACCCTGGTGGTGGTTTGCTGCAGTAACTGTCCTGATGTTTG TCTTGAGTATCGTGACCAACGAGGTGTGGCATACGGGTCTACCGGCATGGGGTGTGCTTGTGGCATTCGTGTTAC CAGTGGTCTACTTTATCCCTGTGGGAGTCATCAAAGCGCTCACAAATATCAGTAGTAACCAACTGAACCTGCTCA CGGAATTCATTGGCGGGTATGCATTCCTCGGGCAGCCCGTGGCCAACATGGCTTTCAAATTCTATGGTTATGTCG CCGTCCAGCAAGGACTCGAGTGGGTTACATACCTCCAAAACGGAATTGGCATTGATTAACATCATATTAGATTTG TCGCCGATATGAAGTTGGCTCATTATATGCACATCGCCCCACGCCTTCTGTTTGTAGCCCAAGGCCTTGCCACAC TCATCGGAGCTATCGTTCAATGTGGTGTGACAGTGTTCATGATCACAAGAATTGATGGTGTATGCACCCCTGAAG CCCAGGGAAATTTCATCTGCCCTCATGGAAAGGTCACATATTCTTCGTCTCTTATTTGGGGTGAGTTCCATCTTA TTGTCGATGTTCTACCATGTCATACCTAATCAACCTTCAGGTGCTGTTGGTCCAGGTCGGTTGTTTTCTTCCGGG CAGATATATAGCAATCTGCTTTGGTTTTTCCTGGTCGGGCCTGCGGTGGTAGTCATCACCTATCTTCTAGGTCGT CGTTGGAAAGCTGCCAACCATGTCTCCTGGCCCGTCGCTTTTGGTGCAATGAGTCTAGTCCCACCTGCCACAGGT ATCAGCTTCTCCTCGTGGTGGATAGTCAACTTGATATTCAATGGCGTACTCCGTCACCGCAAACCCGCGTGGTGG TCGAAATACAGTATGTTCATGGTTTCCCTTTCATCGTTGATTCTTTTGCTAATCGTCCGCAGATTATGTACTATC CGCCGCGCTAGACTGCGGCGTTGCAGTCGCTACAGTAATCATTTTCTTTTGCATAACTCTCCCAGCTGGTTCGTT GAACTGGTGGGGAAATGCTGTGTCGAAAACCACAGCCGACGGCAAAGGCACGCCCTACATGGGCTTACCCGCGCA TGGCTACTTTGGCCCCCCAAAAGGAACTTGGGAGTGA |